Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.42519 * 2 1 4 4 C 1.54485 * 110.36910 * 237.68909 * 2 1 3 5 5 C 1.54507 * 104.06192 * 217.19339 * 4 2 1 6 6 C 1.54483 * 104.06294 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.46441 * 265.09693 * 6 5 4 8 8 C 1.50702 * 110.37032 * 142.80899 * 6 5 4 9 9 O 1.21276 * 119.99753 * 248.16048 * 8 6 5 10 10 N 1.34775 * 119.99777 * 68.16914 * 8 6 5 11 11 C 1.46498 * 120.00007 * 179.97438 * 10 8 6 12 12 H 1.09007 * 110.64046 * 323.30811 * 11 10 8 13 13 C 1.55151 * 110.87500 * 200.06145 * 11 10 8 14 14 C 1.55133 * 101.48613 * 205.89738 * 13 11 10 15 15 N 1.47416 * 104.72209 * 37.29601 * 14 13 11 16 16 C 1.36943 * 125.64981 * 155.81684 * 15 14 13 17 17 H 1.07995 * 120.00211 * 195.81183 * 16 15 14 18 18 C 1.38810 * 119.99857 * 15.81469 * 16 15 14 19 19 N 1.31621 * 120.00263 * 201.22574 * 18 16 15 20 20 Si 1.86806 * 120.00058 * 21.49936 * 18 16 15 21 21 H 1.48491 * 109.47195 * 275.40302 * 20 18 16 22 22 H 1.48500 * 109.46738 * 35.40032 * 20 18 16 23 23 H 1.48498 * 109.47083 * 155.39793 * 20 18 16 24 24 C 1.47021 * 108.70375 * 335.55200 * 15 14 13 25 25 O 1.44422 * 104.80477 * 23.97663 * 6 5 4 26 26 H 1.09005 * 109.46645 * 299.14774 * 1 2 3 27 27 H 1.08999 * 109.46567 * 59.14217 * 1 2 3 28 28 H 1.08991 * 109.47495 * 179.14284 * 1 2 3 29 29 H 1.08998 * 110.50764 * 335.83885 * 4 2 1 30 30 H 1.08995 * 110.50911 * 98.41250 * 4 2 1 31 31 H 1.08999 * 110.51262 * 241.35429 * 5 4 2 32 32 H 1.09000 * 110.51061 * 118.64267 * 5 4 2 33 33 H 0.96999 * 120.00567 * 359.97438 * 10 8 6 34 34 H 1.09000 * 111.00837 * 324.13290 * 13 11 10 35 35 H 1.08994 * 111.00649 * 87.95296 * 13 11 10 36 36 H 1.09000 * 110.49834 * 278.45153 * 14 13 11 37 37 H 1.09004 * 110.34205 * 156.06060 * 14 13 11 38 38 H 0.96992 * 119.99993 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.88327 * 120.70707 * 24 15 14 40 40 H 1.09002 * 109.88440 * 241.71562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2240 5 6 3.3177 -1.5058 -0.6859 6 6 3.3870 -1.0878 0.7996 7 1 4.0524 -0.2336 0.9245 8 6 3.8525 -2.2427 1.6484 9 8 3.0888 -2.7662 2.4317 10 7 5.1177 -2.6938 1.5372 11 6 5.5705 -3.8161 2.3626 12 1 5.1258 -3.7660 3.3566 13 6 7.1190 -3.8451 2.4549 14 6 7.3840 -5.3491 2.7278 15 7 6.3802 -6.0599 1.9152 16 6 6.4895 -7.3457 1.4569 17 1 5.8387 -7.6954 0.6692 18 6 7.4368 -8.1996 2.0049 19 7 7.8400 -9.2553 1.3300 20 14 8.1338 -7.8548 3.7034 21 1 9.2605 -6.8942 3.5904 22 1 7.0729 -7.2743 4.5652 23 1 8.6218 -9.1219 4.3047 24 6 5.2394 -5.1618 1.6836 25 8 2.0323 -0.7245 1.1443 26 1 -0.3633 0.5006 0.8976 27 1 -0.3632 0.5271 -0.8822 28 1 -0.3634 -1.0274 -0.0154 29 1 1.3275 -1.4919 -1.5772 30 1 2.3407 -0.0842 -2.0224 31 1 4.2109 -1.1775 -1.2175 32 1 3.1954 -2.5854 -0.7732 33 1 5.7285 -2.2753 0.9105 34 1 7.5724 -3.5293 1.5154 35 1 7.4726 -3.2309 3.2829 36 1 7.2456 -5.5754 3.7850 37 1 8.3907 -5.6203 2.4096 38 1 8.5016 -9.8522 1.7131 39 1 5.0969 -5.0119 0.6135 40 1 4.3369 -5.5885 2.1214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015731144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -53.462780 kcal Electronic energy + Delta-G solvation = -20898.575002 eV Core-core repulsion = 17714.127091 eV Total energy + Delta-G solvation = -3184.447911 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44642 -38.91906 -37.37694 -34.20013 -32.55547 -32.34295 -31.64589 -29.59362 -28.15505 -26.62317 -24.21350 -22.86507 -21.39141 -21.22767 -20.64920 -19.88094 -17.53290 -17.03790 -16.64229 -16.42084 -15.60687 -15.26668 -14.99614 -14.47366 -14.07771 -13.79766 -13.55724 -13.47350 -12.83362 -12.72097 -12.62523 -12.39408 -12.07207 -11.94232 -11.77047 -11.46124 -11.28405 -11.16488 -11.03803 -11.03630 -10.75410 -10.18782 -10.08251 -9.98616 -9.56992 -9.40453 -8.94982 -8.68644 -7.06003 -5.92736 -3.23281 2.63633 2.86049 3.33234 3.49260 3.50845 3.80544 4.23495 4.39476 4.54728 4.56817 4.66694 4.81375 4.93459 4.99934 5.02916 5.12557 5.17778 5.32600 5.36553 5.40597 5.47977 5.52346 5.57851 5.70865 5.77556 5.84535 5.88319 5.94078 6.14053 6.34578 6.50671 6.51919 6.58370 6.72631 6.83524 7.56470 7.68757 8.28722 8.32386 8.83688 9.69303 10.15867 11.23427 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040992 B = 0.003924 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.899757 B = 7134.434047 C = 7357.438265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.070 0.930 4 C -0.149 4.149 5 C -0.146 4.146 6 C 0.059 3.941 7 H 0.092 0.908 8 C 0.516 3.484 9 O -0.517 6.517 10 N -0.715 5.715 11 C 0.132 3.868 12 H 0.095 0.905 13 C -0.135 4.135 14 C 0.107 3.893 15 N -0.609 5.609 16 C -0.240 4.240 17 H 0.094 0.906 18 C 0.019 3.981 19 N -0.911 5.911 20 Si 0.885 3.115 21 H -0.285 1.285 22 H -0.275 1.275 23 H -0.302 1.302 24 C 0.129 3.871 25 O -0.342 6.342 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.399 0.601 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.263 0.737 39 H 0.035 0.965 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 21.976 -4.697 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.088 0.912 4 C -0.187 4.187 5 C -0.184 4.184 6 C -0.002 4.002 7 H 0.110 0.890 8 C 0.301 3.699 9 O -0.391 6.391 10 N -0.368 5.368 11 C 0.027 3.973 12 H 0.113 0.887 13 C -0.174 4.174 14 C -0.018 4.018 15 N -0.336 5.336 16 C -0.367 4.367 17 H 0.111 0.889 18 C -0.179 4.179 19 N -0.555 5.555 20 Si 0.716 3.284 21 H -0.212 1.212 22 H -0.201 1.201 23 H -0.231 1.231 24 C 0.002 3.998 25 O -0.260 6.260 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.082 21.294 -3.956 23.117 hybrid contribution 0.879 0.271 0.482 1.038 sum -7.203 21.565 -3.474 23.000 Atomic orbital electron populations 1.21796 0.92893 1.03264 1.02420 1.23075 0.95746 0.95308 0.85047 0.91162 1.23012 0.97582 0.99831 0.98274 1.22917 0.99335 1.02655 0.93459 1.22822 0.87073 0.96254 0.94078 0.88996 1.20164 0.82204 0.84199 0.83382 1.90744 1.53526 1.58039 1.36806 1.45905 1.12257 1.35340 1.43266 1.22065 0.94744 0.85620 0.94821 0.88721 1.23055 0.93827 0.98477 1.01997 1.22057 0.95128 0.89362 0.95275 1.44765 1.14925 1.11670 1.62255 1.18669 1.18583 0.84790 1.14639 0.88884 1.24943 0.98361 0.96073 0.98542 1.69822 1.32289 1.16549 1.36889 0.86995 0.78742 0.75772 0.86916 1.21235 1.20101 1.23051 1.21663 0.91465 0.88842 0.97836 1.89301 1.24978 1.74168 1.37551 0.91729 0.91092 0.91515 0.90137 0.90187 0.89489 0.89731 0.76671 0.90563 0.90930 0.95111 0.91679 0.92705 0.94680 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.52 37.16 0.35 -0.80 16 2 C 0.07 0.59 3.92 -25.95 -0.10 0.49 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.15 -1.14 6.63 -25.16 -0.17 -1.31 16 5 C -0.15 -1.29 6.62 -25.16 -0.17 -1.45 16 6 C 0.06 0.66 3.71 -27.10 -0.10 0.56 16 7 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 8 C 0.52 7.65 7.06 -10.99 -0.08 7.57 16 9 O -0.52 -10.25 16.28 -13.63 -0.22 -10.47 16 10 N -0.71 -9.44 5.13 -52.03 -0.27 -9.70 16 11 C 0.13 2.21 3.23 -66.10 -0.21 2.00 16 12 H 0.09 1.70 7.70 -51.93 -0.40 1.30 16 13 C -0.13 -2.12 6.71 -24.46 -0.16 -2.28 16 14 C 0.11 2.30 4.68 -2.41 -0.01 2.28 16 15 N -0.61 -14.96 3.24 -169.94 -0.55 -15.51 16 16 C -0.24 -6.93 10.60 -15.06 -0.16 -7.09 16 17 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 18 C 0.02 0.56 5.45 -17.43 -0.09 0.46 16 19 N -0.91 -28.37 13.97 55.49 0.78 -27.59 16 20 Si 0.89 22.75 24.24 -169.99 -4.12 18.63 16 21 H -0.29 -6.92 6.40 56.52 0.36 -6.56 16 22 H -0.28 -7.02 6.45 56.52 0.36 -6.66 16 23 H -0.30 -7.89 7.11 56.52 0.40 -7.48 16 24 C 0.13 2.69 6.99 -3.06 -0.02 2.66 16 25 O -0.34 -4.54 10.61 -54.42 -0.58 -5.12 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.08 0.64 7.86 -51.93 -0.41 0.23 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.90 7.86 -51.93 -0.41 0.49 16 33 H 0.40 3.88 8.53 -40.82 -0.35 3.54 16 34 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.03 0.69 5.56 -51.93 -0.29 0.40 16 37 H 0.07 1.47 6.24 -51.93 -0.32 1.14 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.04 0.72 8.03 -51.93 -0.42 0.30 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 317.97 15.07 4.79 4.79 Total: -1.00 -35.39 317.97 -7.54 -42.93 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.45 Total: -1.04 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -0.92 Total: 3.08 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.04 Total: -52.81 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.80 Total: -15.59 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.12 Total: 18.63 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.39 -7.54 -42.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015731144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.534 kcal (2) G-P(sol) polarization free energy of solvation -35.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds