Wall clock time and date at job start Mon Mar 30 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.42519 * 2 1 4 4 C 1.54485 * 110.36910 * 237.68909 * 2 1 3 5 5 C 1.54507 * 104.06192 * 217.19339 * 4 2 1 6 6 C 1.54483 * 104.06294 * 0.02562 * 5 4 2 7 7 H 1.09000 * 110.46441 * 265.09693 * 6 5 4 8 8 C 1.50702 * 110.37032 * 142.80899 * 6 5 4 9 9 O 1.21276 * 119.99753 * 248.16048 * 8 6 5 10 10 N 1.34775 * 119.99777 * 68.16914 * 8 6 5 11 11 C 1.46498 * 120.00007 * 179.97438 * 10 8 6 12 12 H 1.09007 * 110.64046 * 323.30811 * 11 10 8 13 13 C 1.55151 * 110.87500 * 200.06145 * 11 10 8 14 14 C 1.55133 * 101.48613 * 205.89738 * 13 11 10 15 15 N 1.47416 * 104.72209 * 37.29601 * 14 13 11 16 16 C 1.36943 * 125.64981 * 155.81684 * 15 14 13 17 17 H 1.07995 * 120.00211 * 195.81183 * 16 15 14 18 18 C 1.38810 * 119.99857 * 15.81469 * 16 15 14 19 19 N 1.31621 * 120.00263 * 201.22574 * 18 16 15 20 20 Si 1.86806 * 120.00058 * 21.49936 * 18 16 15 21 21 H 1.48491 * 109.47195 * 275.40302 * 20 18 16 22 22 H 1.48500 * 109.46738 * 35.40032 * 20 18 16 23 23 H 1.48498 * 109.47083 * 155.39793 * 20 18 16 24 24 C 1.47021 * 108.70375 * 335.55200 * 15 14 13 25 25 O 1.44422 * 104.80477 * 23.97663 * 6 5 4 26 26 H 1.09005 * 109.46645 * 299.14774 * 1 2 3 27 27 H 1.08999 * 109.46567 * 59.14217 * 1 2 3 28 28 H 1.08991 * 109.47495 * 179.14284 * 1 2 3 29 29 H 1.08998 * 110.50764 * 335.83885 * 4 2 1 30 30 H 1.08995 * 110.50911 * 98.41250 * 4 2 1 31 31 H 1.08999 * 110.51262 * 241.35429 * 5 4 2 32 32 H 1.09000 * 110.51061 * 118.64267 * 5 4 2 33 33 H 0.96999 * 120.00567 * 359.97438 * 10 8 6 34 34 H 1.09000 * 111.00837 * 324.13290 * 13 11 10 35 35 H 1.08994 * 111.00649 * 87.95296 * 13 11 10 36 36 H 1.09000 * 110.49834 * 278.45153 * 14 13 11 37 37 H 1.09004 * 110.34205 * 156.06060 * 14 13 11 38 38 H 0.96992 * 119.99993 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.88327 * 120.70707 * 24 15 14 40 40 H 1.09002 * 109.88440 * 241.71562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2240 5 6 3.3177 -1.5058 -0.6859 6 6 3.3870 -1.0878 0.7996 7 1 4.0524 -0.2336 0.9245 8 6 3.8525 -2.2427 1.6484 9 8 3.0888 -2.7662 2.4317 10 7 5.1177 -2.6938 1.5372 11 6 5.5705 -3.8161 2.3626 12 1 5.1258 -3.7660 3.3566 13 6 7.1190 -3.8451 2.4549 14 6 7.3840 -5.3491 2.7278 15 7 6.3802 -6.0599 1.9152 16 6 6.4895 -7.3457 1.4569 17 1 5.8387 -7.6954 0.6692 18 6 7.4368 -8.1996 2.0049 19 7 7.8400 -9.2553 1.3300 20 14 8.1338 -7.8548 3.7034 21 1 9.2605 -6.8942 3.5904 22 1 7.0729 -7.2743 4.5652 23 1 8.6218 -9.1219 4.3047 24 6 5.2394 -5.1618 1.6836 25 8 2.0323 -0.7245 1.1443 26 1 -0.3633 0.5006 0.8976 27 1 -0.3632 0.5271 -0.8822 28 1 -0.3634 -1.0274 -0.0154 29 1 1.3275 -1.4919 -1.5772 30 1 2.3407 -0.0842 -2.0224 31 1 4.2109 -1.1775 -1.2175 32 1 3.1954 -2.5854 -0.7732 33 1 5.7285 -2.2753 0.9105 34 1 7.5724 -3.5293 1.5154 35 1 7.4726 -3.2309 3.2829 36 1 7.2456 -5.5754 3.7850 37 1 8.3907 -5.6203 2.4096 38 1 8.5016 -9.8522 1.7131 39 1 5.0969 -5.0119 0.6135 40 1 4.3369 -5.5885 2.1214 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001015731144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:34 Heat of formation + Delta-G solvation = -80.277473 kcal Electronic energy + Delta-G solvation = -20899.737774 eV Core-core repulsion = 17714.127091 eV Total energy + Delta-G solvation = -3185.610683 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.46583 -40.04819 -38.86009 -35.71962 -34.15235 -33.26989 -32.69587 -31.25192 -29.64152 -27.67529 -25.99832 -23.69382 -22.89811 -22.09362 -21.94108 -21.26130 -19.13678 -18.30834 -17.77833 -17.44162 -17.20471 -16.65816 -16.24424 -15.66039 -15.43371 -15.20803 -14.75258 -14.71987 -14.31364 -14.08241 -13.83207 -13.49169 -13.25112 -13.16414 -13.10224 -12.78042 -12.61465 -12.46913 -12.42801 -12.11170 -11.83135 -11.66435 -11.64465 -11.48112 -11.02376 -10.88796 -10.64267 -10.18982 -9.12976 -8.20011 -5.48173 1.27701 1.39783 1.47544 1.50383 1.81394 2.38475 2.97621 3.04149 3.28286 3.50295 3.57461 3.68042 3.82054 3.92965 3.98718 4.11727 4.18161 4.27652 4.33922 4.46357 4.48298 4.57484 4.76337 4.77615 4.86604 4.90872 4.93505 4.95575 4.98067 5.03859 5.13670 5.18385 5.27133 5.45082 5.60574 5.84680 6.06126 6.52258 6.70629 7.20203 7.48972 8.02768 8.99776 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.040992 B = 0.003924 C = 0.003805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.899757 B = 7134.434047 C = 7357.438265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 H 0.095 0.905 4 C -0.145 4.145 5 C -0.143 4.143 6 C 0.063 3.937 7 H 0.132 0.868 8 C 0.512 3.488 9 O -0.576 6.576 10 N -0.696 5.696 11 C 0.146 3.854 12 H 0.083 0.917 13 C -0.112 4.112 14 C 0.094 3.906 15 N -0.626 5.626 16 C -0.241 4.241 17 H 0.055 0.945 18 C -0.038 4.038 19 N -0.957 5.957 20 Si 0.951 3.049 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.308 1.308 24 C 0.127 3.873 25 O -0.384 6.384 26 H 0.058 0.942 27 H 0.097 0.903 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.057 0.943 33 H 0.421 0.579 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.027 0.973 37 H 0.057 0.943 38 H 0.264 0.736 39 H 0.036 0.964 40 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.119 25.748 -4.903 26.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.001 3.999 3 H 0.113 0.887 4 C -0.183 4.183 5 C -0.181 4.181 6 C 0.002 3.998 7 H 0.149 0.851 8 C 0.298 3.702 9 O -0.455 6.455 10 N -0.350 5.350 11 C 0.040 3.960 12 H 0.101 0.899 13 C -0.150 4.150 14 C -0.031 4.031 15 N -0.353 5.353 16 C -0.369 4.369 17 H 0.073 0.927 18 C -0.232 4.232 19 N -0.604 5.604 20 Si 0.780 3.220 21 H -0.181 1.181 22 H -0.200 1.200 23 H -0.237 1.237 24 C 0.000 4.000 25 O -0.304 6.304 26 H 0.077 0.923 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.141 0.859 32 H 0.076 0.924 33 H 0.259 0.741 34 H 0.120 0.880 35 H 0.130 0.870 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -6.708 25.139 -4.193 26.354 hybrid contribution 0.338 -0.916 0.455 1.077 sum -6.370 24.223 -3.737 25.324 Atomic orbital electron populations 1.21844 0.92818 1.02377 1.03436 1.23374 0.96022 0.96215 0.84249 0.88708 1.23034 0.96708 0.99999 0.98525 1.22972 1.01561 1.01272 0.92339 1.22996 0.87056 0.95657 0.94118 0.85078 1.21017 0.81776 0.84608 0.82752 1.90721 1.55120 1.60136 1.39491 1.45650 1.12414 1.33924 1.42967 1.21683 0.95839 0.84327 0.94145 0.89911 1.22994 0.92370 0.94686 1.04958 1.22246 0.93697 0.92905 0.94217 1.44841 1.17216 1.10771 1.62472 1.18585 1.17466 0.87145 1.13724 0.92675 1.25620 0.99389 0.96170 1.02028 1.69949 1.33767 1.18134 1.38574 0.85925 0.78838 0.75886 0.81398 1.18077 1.20012 1.23674 1.21750 0.89435 0.90685 0.98095 1.89274 1.26208 1.75039 1.39849 0.92327 0.88399 0.93411 0.91115 0.87000 0.85907 0.92366 0.74051 0.87996 0.86977 0.95540 0.92523 0.92697 0.94601 0.97503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.52 71.98 0.69 -1.47 16 2 C 0.06 0.90 3.92 31.10 0.12 1.02 16 3 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.15 -1.81 6.63 31.61 0.21 -1.60 16 5 C -0.14 -2.12 6.62 31.61 0.21 -1.91 16 6 C 0.06 1.23 3.71 30.35 0.11 1.34 16 7 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 8 C 0.51 14.51 7.06 87.66 0.62 15.13 16 9 O -0.58 -23.25 16.28 15.33 0.25 -23.00 16 10 N -0.70 -16.56 5.13 -436.93 -2.24 -18.80 16 11 C 0.15 4.62 3.23 46.18 0.15 4.77 16 12 H 0.08 2.89 7.70 -2.38 -0.02 2.87 16 13 C -0.11 -3.06 6.71 32.06 0.22 -2.84 16 14 C 0.09 3.81 4.68 86.94 0.41 4.22 16 15 N -0.63 -30.89 3.24 -691.56 -2.24 -33.14 16 16 C -0.24 -14.37 10.60 84.03 0.89 -13.48 16 17 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 18 C -0.04 -2.27 5.45 84.86 0.46 -1.81 16 19 N -0.96 -61.33 13.97 21.65 0.30 -61.03 16 20 Si 0.95 47.26 24.24 68.60 1.66 48.92 16 21 H -0.26 -11.40 6.40 99.48 0.64 -10.77 16 22 H -0.27 -13.45 6.45 99.48 0.64 -12.80 16 23 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 24 C 0.13 5.35 6.99 86.73 0.61 5.96 16 25 O -0.38 -9.75 10.61 -130.63 -1.39 -11.14 16 26 H 0.06 0.90 8.14 -2.38 -0.02 0.89 16 27 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.86 8.12 -2.39 -0.02 0.84 16 29 H 0.07 1.01 7.86 -2.39 -0.02 1.00 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.17 7.86 -2.39 -0.02 1.15 16 33 H 0.42 6.38 8.53 -92.71 -0.79 5.59 16 34 H 0.10 2.32 8.01 -2.39 -0.02 2.30 16 35 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.03 1.12 5.56 -2.39 -0.01 1.11 16 37 H 0.06 2.40 6.24 -2.39 -0.01 2.38 16 38 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 39 H 0.04 1.49 8.03 -2.39 -0.02 1.47 16 40 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 Total: -1.00 -82.41 317.97 1.14 -81.27 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.10 Total: 7.58 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: 4.69 Total: 9.33 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -4.18 Total: -112.97 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -1.14 Total: -34.14 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.66 Total: 48.92 kcal Total: -82.41 1.14 -81.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015731144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.996 kcal (2) G-P(sol) polarization free energy of solvation -82.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds