Wall clock time and date at job start Mon Mar 30 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 110.33021 * 2 1 4 4 C 1.54480 * 110.46513 * 237.68408 * 2 1 3 5 5 C 1.54685 * 104.07641 * 217.04993 * 4 2 1 6 6 C 1.54473 * 103.98352 * 0.14099 * 5 4 2 7 7 H 1.09001 * 110.36951 * 264.96709 * 6 5 4 8 8 C 1.52994 * 110.37389 * 142.73502 * 6 5 4 9 9 C 1.50700 * 109.47225 * 176.55112 * 8 6 5 10 10 O 1.21289 * 120.00044 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00156 * 180.02562 * 9 8 6 12 12 C 1.46500 * 119.99959 * 179.97438 * 11 9 8 13 13 C 1.53493 * 114.20868 * 204.99739 * 12 11 9 14 14 N 1.47060 * 87.98914 * 220.14850 * 13 12 11 15 15 C 1.36935 * 136.05988 * 207.08611 * 14 13 12 16 16 H 1.08005 * 119.99877 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00369 * 179.72694 * 15 14 13 18 18 N 1.31617 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99572 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99815 * 19 17 15 23 23 C 1.47066 * 87.88562 * 27.34336 * 14 13 12 24 24 O 1.44427 * 110.36962 * 122.25138 * 2 1 3 25 25 H 1.08998 * 109.47453 * 299.20468 * 1 2 3 26 26 H 1.08999 * 109.47152 * 59.20343 * 1 2 3 27 27 H 1.09002 * 109.47328 * 179.20137 * 1 2 3 28 28 H 1.08997 * 110.51060 * 335.78887 * 4 2 1 29 29 H 1.08998 * 110.50834 * 98.36253 * 4 2 1 30 30 H 1.08997 * 110.61046 * 241.48779 * 5 4 2 31 31 H 1.09009 * 110.48546 * 118.72816 * 5 4 2 32 32 H 1.08997 * 109.47299 * 56.54789 * 8 6 5 33 33 H 1.09003 * 109.47145 * 296.54850 * 8 6 5 34 34 H 0.97001 * 119.99934 * 359.97438 * 11 9 8 35 35 H 1.09004 * 113.28317 * 338.06720 * 12 11 9 36 36 H 1.08999 * 113.46842 * 105.36774 * 13 12 11 37 37 H 1.08999 * 113.46484 * 334.93175 * 13 12 11 38 38 H 0.97004 * 120.00382 * 180.02562 * 18 17 15 39 39 H 1.08995 * 113.47095 * 87.43770 * 23 14 13 40 40 H 1.09002 * 113.46562 * 217.88366 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0220 0.0000 4 6 2.0701 -0.7737 -1.2231 5 6 3.3236 -1.5023 -0.6839 6 6 3.3882 -1.0841 0.8017 7 1 4.0522 -0.2287 0.9265 8 6 3.8619 -2.2553 1.6647 9 6 3.9987 -1.8020 3.0954 10 8 3.7430 -0.6549 3.3952 11 7 4.4062 -2.6710 4.0415 12 6 4.5397 -2.2302 5.4322 13 6 5.5357 -3.0536 6.2606 14 7 4.5890 -2.9732 7.3831 15 6 4.6744 -3.0070 8.7494 16 1 5.6364 -3.1183 9.2277 17 6 3.5253 -2.8930 9.5197 18 7 2.3537 -2.7520 8.9369 19 14 3.6419 -2.9384 11.3835 20 1 5.0615 -3.1034 11.7868 21 1 3.1121 -1.6693 11.9437 22 1 2.8448 -4.0792 11.9017 23 6 3.5094 -2.8472 6.3924 24 8 2.0327 -0.7225 1.1451 25 1 -0.3634 0.5014 0.8970 26 1 -0.3633 0.5261 -0.8827 27 1 -0.3634 -1.0276 -0.0143 28 1 1.3313 -1.4928 -1.5768 29 1 2.3427 -0.0836 -2.0216 30 1 4.2171 -1.1713 -1.2131 31 1 3.2044 -2.5823 -0.7718 32 1 4.8273 -2.6073 1.3011 33 1 3.1349 -3.0655 1.6082 34 1 4.6111 -3.5883 3.8017 35 1 4.6592 -1.1514 5.5327 36 1 6.4764 -2.5360 6.4483 37 1 5.6791 -4.0668 5.8853 38 1 1.5507 -2.6720 9.4751 39 1 3.1186 -3.8061 6.0519 40 1 2.7238 -2.1537 6.6924 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030895068.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:53 Heat of formation + Delta-G solvation = -31.350051 kcal Electronic energy + Delta-G solvation = -20456.060382 eV Core-core repulsion = 17272.571351 eV Total energy + Delta-G solvation = -3183.489031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00233 -39.04526 -37.52406 -33.43720 -32.88266 -32.28279 -31.78480 -29.37745 -27.38466 -24.82372 -24.56628 -23.02382 -21.66028 -20.93857 -20.03074 -19.56608 -17.05748 -16.73908 -16.14431 -16.07493 -15.81509 -14.92603 -14.89561 -14.38286 -13.93963 -13.80307 -13.60795 -13.01125 -12.72409 -12.51240 -12.11968 -12.01020 -11.96768 -11.68227 -11.45088 -11.36351 -11.20207 -10.96542 -10.89062 -10.80044 -10.78389 -10.32447 -10.02871 -9.70244 -9.44557 -9.34979 -8.81382 -8.28745 -6.90378 -5.75788 -3.10293 3.04184 3.40148 3.44189 3.48332 3.55908 3.75972 4.39914 4.45552 4.52245 4.75425 4.84613 4.97048 5.08715 5.19819 5.25567 5.30660 5.33970 5.44570 5.50067 5.55723 5.58810 5.61626 5.66745 5.79853 5.93146 5.96615 6.04218 6.06462 6.27777 6.42884 6.59075 6.83752 6.91960 7.24887 7.40584 7.59466 7.96618 7.99130 8.68195 9.03348 9.69912 10.61788 11.41196 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.036086 B = 0.003451 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.748301 B = 8112.284545 C = 8674.982505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.066 0.934 4 C -0.151 4.151 5 C -0.152 4.152 6 C 0.093 3.907 7 H 0.075 0.925 8 C -0.137 4.137 9 C 0.510 3.490 10 O -0.532 6.532 11 N -0.717 5.717 12 C 0.088 3.912 13 C 0.111 3.889 14 N -0.605 5.605 15 C -0.220 4.220 16 H 0.084 0.916 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.144 3.856 24 O -0.351 6.351 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.395 0.605 35 H 0.115 0.885 36 H 0.044 0.956 37 H 0.033 0.967 38 H 0.254 0.746 39 H 0.026 0.974 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.606 0.872 -22.424 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.009 3.991 3 H 0.084 0.916 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.034 3.966 7 H 0.093 0.907 8 C -0.178 4.178 9 C 0.296 3.704 10 O -0.408 6.408 11 N -0.368 5.368 12 C -0.017 4.017 13 C -0.017 4.017 14 N -0.331 5.331 15 C -0.348 4.348 16 H 0.101 0.899 17 C -0.204 4.204 18 N -0.562 5.562 19 Si 0.746 3.254 20 H -0.204 1.204 21 H -0.216 1.216 22 H -0.217 1.217 23 C 0.017 3.983 24 O -0.270 6.270 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.228 0.772 35 H 0.132 0.868 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.182 1.678 -21.620 21.717 hybrid contribution 0.163 -0.695 0.690 0.993 sum 1.345 0.983 -20.930 20.996 Atomic orbital electron populations 1.21785 0.93358 1.02799 1.02385 1.22946 0.95308 0.95631 0.85204 0.91589 1.23030 0.97632 0.99780 0.98412 1.23050 0.98530 1.01526 0.95919 1.22641 0.85820 0.96336 0.91791 0.90663 1.21789 1.03480 0.99411 0.93077 1.20432 0.76873 0.86012 0.87103 1.90722 1.48721 1.18877 1.82501 1.46020 1.68359 1.13561 1.08819 1.23625 1.00237 1.00280 0.77585 1.22712 0.94278 0.96364 0.88299 1.45286 1.03061 1.84944 0.99787 1.18947 0.93657 1.44023 0.78140 0.89860 1.24847 0.95178 1.02101 0.98272 1.69856 0.97333 1.55191 1.33868 0.85997 0.77353 0.77318 0.84779 1.20383 1.21568 1.21692 1.22573 0.93205 0.97241 0.85255 1.89296 1.26066 1.74262 1.37418 0.91635 0.91473 0.91892 0.90644 0.90802 0.90485 0.90481 0.87868 0.88216 0.77153 0.86753 0.93754 0.94933 0.93566 0.95656 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.53 37.16 0.35 -1.03 16 2 C 0.07 0.73 3.92 -25.96 -0.10 0.62 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.22 6.64 -25.07 -0.17 -1.38 16 5 C -0.15 -1.24 6.64 -25.07 -0.17 -1.41 16 6 C 0.09 1.09 2.74 -25.96 -0.07 1.02 16 7 H 0.08 0.96 7.96 -51.93 -0.41 0.54 16 8 C -0.14 -1.52 5.33 -27.89 -0.15 -1.67 16 9 C 0.51 8.27 7.74 -10.99 -0.09 8.18 16 10 O -0.53 -11.11 15.17 -3.85 -0.06 -11.17 16 11 N -0.72 -11.33 5.39 -53.48 -0.29 -11.62 16 12 C 0.09 1.79 4.62 -67.68 -0.31 1.47 16 13 C 0.11 2.29 8.44 -8.52 -0.07 2.22 16 14 N -0.60 -16.02 3.78 -184.64 -0.70 -16.72 16 15 C -0.22 -6.33 10.75 -15.06 -0.16 -6.50 16 16 H 0.08 2.28 7.83 -52.48 -0.41 1.87 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -28.09 11.49 55.49 0.64 -27.45 16 19 Si 0.92 22.51 29.55 -169.99 -5.02 17.49 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.14 3.58 7.24 -8.37 -0.06 3.52 16 24 O -0.35 -5.16 10.51 -44.63 -0.47 -5.63 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 28 H 0.07 0.56 7.86 -51.93 -0.41 0.15 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.55 7.87 -51.92 -0.41 0.14 16 32 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 4.91 8.76 -40.82 -0.36 4.55 16 35 H 0.11 2.56 7.45 -51.93 -0.39 2.17 16 36 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.03 0.62 8.13 -51.93 -0.42 0.19 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 2.14 7.10 -51.93 -0.37 1.77 16 LS Contribution 329.00 15.07 4.96 4.96 Total: -1.00 -35.41 329.00 -8.57 -43.98 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.54 Total: 1.43 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -1.09 Total: 4.74 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.35 Total: -55.79 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.53 Total: -16.81 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.41 -8.57 -43.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030895068.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.628 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds