Wall clock time and date at job start Mon Mar 30 2020 02:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.48101 * 2 1 4 4 C 1.53090 * 109.48017 * 239.97682 * 2 1 3 5 5 C 1.53168 * 109.16383 * 182.41071 * 4 2 1 6 6 H 1.09003 * 109.61847 * 176.89455 * 5 4 2 7 7 C 1.50701 * 109.54617 * 297.11111 * 5 4 2 8 8 O 1.21286 * 119.99821 * 359.55894 * 7 5 4 9 9 N 1.34778 * 120.00352 * 179.55356 * 7 5 4 10 10 C 1.46501 * 119.99860 * 180.02562 * 9 7 5 11 11 C 1.53943 * 113.74362 * 253.74427 * 10 9 7 12 12 N 1.47812 * 86.03545 * 222.08987 * 11 10 9 13 13 C 1.36939 * 134.45669 * 204.64930 * 12 11 10 14 14 H 1.07992 * 120.00205 * 179.86307 * 13 12 11 15 15 C 1.38816 * 119.99659 * 359.86136 * 13 12 11 16 16 N 1.31621 * 119.99938 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47306 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47371 * 119.99445 * 17 15 13 20 20 H 1.48501 * 109.47185 * 239.99672 * 17 15 13 21 21 C 1.47583 * 91.05444 * 24.54720 * 12 11 10 22 22 C 1.53177 * 109.03858 * 56.98247 * 5 4 2 23 23 C 1.53096 * 109.16164 * 303.01870 * 22 5 4 24 24 O 1.42897 * 109.47704 * 120.03628 * 2 1 3 25 25 H 1.08998 * 109.47143 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47122 * 300.02431 * 1 2 3 27 27 H 1.09006 * 109.46531 * 60.02150 * 1 2 3 28 28 H 1.09002 * 109.52149 * 62.50115 * 4 2 1 29 29 H 1.09007 * 109.52293 * 302.31619 * 4 2 1 30 30 H 0.96999 * 119.99757 * 0.02562 * 9 7 5 31 31 H 1.09000 * 112.94232 * 25.34091 * 10 9 7 32 32 H 1.08998 * 113.76698 * 336.34830 * 11 10 9 33 33 H 1.08990 * 113.77028 * 107.74735 * 11 10 9 34 34 H 0.97002 * 119.99401 * 180.02562 * 16 15 13 35 35 H 1.09000 * 113.77011 * 221.15384 * 21 12 11 36 36 H 1.09000 * 113.87012 * 89.76988 * 21 12 11 37 37 H 1.09003 * 109.52410 * 183.11691 * 22 5 4 38 38 H 1.08996 * 109.52226 * 62.92248 * 22 5 4 39 39 H 1.08993 * 109.48033 * 177.59323 * 23 22 5 40 40 H 1.09001 * 109.48095 * 297.62604 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 1 3.9405 -1.3316 -2.0708 7 6 4.1212 0.6316 -1.2517 8 8 3.3652 1.5781 -1.3127 9 7 5.4533 0.8342 -1.2192 10 6 5.9880 2.1976 -1.2571 11 6 6.6224 2.5774 -2.6073 12 7 7.6928 3.2118 -1.8094 13 6 8.5906 4.2200 -2.0389 14 1 9.2904 4.5058 -1.2676 15 6 8.6013 4.8746 -3.2630 16 7 7.7488 4.5258 -4.2032 17 14 9.8265 6.2494 -3.5762 18 1 10.6685 6.4467 -2.3690 19 1 10.6903 5.8894 -4.7293 20 1 9.0944 7.5053 -3.8793 21 6 7.4038 2.3247 -0.6660 22 6 4.0176 -1.4602 0.0807 23 6 3.4307 -0.7095 1.2790 24 8 2.0065 -0.6743 1.1663 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3632 0.5135 -0.8903 28 1 1.7149 -0.1841 -2.1399 29 1 1.6443 -1.7374 -1.2711 30 1 6.0579 0.0772 -1.1707 31 1 5.2858 2.9401 -0.8778 32 1 6.9588 1.7205 -3.1910 33 1 6.0290 3.2830 -3.1885 34 1 7.7566 4.9830 -5.0587 35 1 7.4331 2.8291 0.2998 36 1 7.9695 1.3930 -0.6765 37 1 5.1059 -1.4499 0.1419 38 1 3.6612 -2.4902 0.0861 39 1 3.7100 -1.2206 2.2003 40 1 3.8193 0.3087 1.2959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031158712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:28 Heat of formation + Delta-G solvation = -36.832417 kcal Electronic energy + Delta-G solvation = -21174.176848 eV Core-core repulsion = 17990.450084 eV Total energy + Delta-G solvation = -3183.726764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.59885 -38.60628 -37.31055 -33.99572 -33.41634 -32.66188 -31.69107 -28.00281 -27.51645 -24.93470 -24.84445 -23.30966 -22.47037 -21.36720 -19.82105 -19.17253 -16.83165 -16.57947 -16.30405 -16.23400 -15.77749 -15.15093 -14.86621 -14.36519 -14.04025 -13.91889 -13.74486 -12.89358 -12.66281 -12.52083 -12.36490 -12.10090 -12.04680 -11.79526 -11.48494 -11.47627 -11.16935 -10.91898 -10.87414 -10.76405 -10.52142 -10.39360 -10.04212 -9.66276 -9.56505 -9.15081 -8.84748 -8.46051 -6.95580 -5.80737 -3.14873 2.84802 3.36341 3.40620 3.45035 3.47214 3.75757 4.42118 4.50408 4.63656 4.69096 4.84614 5.01958 5.14227 5.19525 5.34443 5.40863 5.44496 5.49129 5.53060 5.58841 5.64170 5.72232 5.82197 5.85389 5.94252 5.98415 6.11379 6.17307 6.20846 6.37878 6.52155 6.73641 7.20140 7.24216 7.32346 7.52463 7.83803 7.93136 8.50984 8.99456 9.65841 10.51944 11.36070 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.041293 B = 0.003902 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.910639 B = 7173.200741 C = 7411.882259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.073 3.927 3 H 0.086 0.914 4 C -0.126 4.126 5 C -0.115 4.115 6 H 0.100 0.900 7 C 0.513 3.487 8 O -0.540 6.540 9 N -0.714 5.714 10 C 0.091 3.909 11 C 0.154 3.846 12 N -0.607 5.607 13 C -0.226 4.226 14 H 0.082 0.918 15 C -0.006 4.006 16 N -0.918 5.918 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.289 1.289 21 C 0.113 3.887 22 C -0.146 4.146 23 C 0.060 3.940 24 O -0.384 6.384 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.396 0.604 31 H 0.110 0.890 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.254 0.746 35 H 0.049 0.951 36 H 0.035 0.965 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 -14.143 8.103 19.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.016 3.984 3 H 0.104 0.896 4 C -0.164 4.164 5 C -0.136 4.136 6 H 0.118 0.882 7 C 0.299 3.701 8 O -0.417 6.417 9 N -0.364 5.364 10 C -0.014 4.014 11 C 0.028 3.972 12 N -0.334 5.334 13 C -0.354 4.354 14 H 0.100 0.900 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.216 1.216 21 C -0.014 4.014 22 C -0.184 4.184 23 C -0.017 4.017 24 O -0.304 6.304 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.229 0.771 31 H 0.127 0.873 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.292 -13.251 8.003 18.589 hybrid contribution 1.410 0.311 -0.622 1.572 sum -8.881 -12.940 7.381 17.344 Atomic orbital electron populations 1.21733 0.93454 1.02234 1.02412 1.22391 0.94775 0.97152 0.84075 0.89577 1.21980 0.92991 1.01501 0.99957 1.21454 0.97605 0.94495 1.00079 0.88163 1.20520 0.82723 0.90905 0.75984 1.90651 1.57547 1.43947 1.49559 1.46182 1.06461 1.09812 1.73968 1.23896 0.94488 0.82123 1.00861 1.22699 0.87937 0.94862 0.91697 1.45728 1.39868 1.36100 1.11660 1.19037 1.10292 1.07389 0.98659 0.89981 1.24823 0.99464 0.99970 0.96029 1.69843 1.38017 1.43375 1.05260 0.86018 0.80236 0.81524 0.77788 1.20381 1.21682 1.21573 1.22860 0.91420 0.93900 0.93249 1.22182 1.01459 1.00496 0.94215 1.22530 0.81563 0.99778 0.97832 1.87869 1.20505 1.78277 1.43714 0.92348 0.92093 0.91063 0.90074 0.90853 0.77077 0.87255 0.95432 0.90539 0.93562 0.93299 0.94781 0.90324 0.90050 0.88801 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.56 37.16 0.36 -1.12 16 2 C 0.07 0.93 2.98 -26.68 -0.08 0.85 16 3 H 0.09 1.33 5.82 -51.93 -0.30 1.03 16 4 C -0.13 -1.43 4.56 -26.60 -0.12 -1.55 16 5 C -0.11 -1.27 3.04 -91.59 -0.28 -1.55 16 6 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 7 C 0.51 7.70 5.82 -10.98 -0.06 7.63 16 8 O -0.54 -10.15 13.48 5.55 0.07 -10.07 16 9 N -0.71 -10.58 5.25 -55.34 -0.29 -10.87 16 10 C 0.09 1.75 4.40 -70.15 -0.31 1.44 16 11 C 0.15 3.68 7.33 -2.84 -0.02 3.66 16 12 N -0.61 -15.53 3.70 -177.90 -0.66 -16.19 16 13 C -0.23 -6.36 10.70 -15.06 -0.16 -6.52 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -27.51 11.39 55.49 0.63 -26.88 16 17 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 C 0.11 2.22 8.69 -2.96 -0.03 2.19 16 22 C -0.15 -1.33 5.57 -26.59 -0.15 -1.48 16 23 C 0.06 0.65 6.62 37.21 0.25 0.90 16 24 O -0.38 -4.96 10.41 -35.23 -0.37 -5.32 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.97 8.02 -51.93 -0.42 0.56 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.40 4.70 8.10 -40.82 -0.33 4.37 16 31 H 0.11 2.30 7.51 -51.93 -0.39 1.91 16 32 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 2.09 7.16 -51.93 -0.37 1.71 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.61 8.11 -51.93 -0.42 0.19 16 37 H 0.08 0.60 7.50 -51.93 -0.39 0.21 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.64 7.38 -51.93 -0.38 0.26 16 LS Contribution 318.87 15.07 4.81 4.81 Total: -1.00 -32.88 318.87 -7.88 -40.77 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -6.36 Total: 2.46 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: -0.70 Total: 4.18 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.32 Total: -53.94 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.29 Total: -15.40 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.88 -7.88 -40.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031158712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.933 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds