Wall clock time and date at job start Mon Mar 30 2020 02:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.48101 * 2 1 4 4 C 1.53090 * 109.48017 * 239.97682 * 2 1 3 5 5 C 1.53168 * 109.16383 * 182.41071 * 4 2 1 6 6 H 1.09003 * 109.61847 * 176.89455 * 5 4 2 7 7 C 1.50701 * 109.54617 * 297.11111 * 5 4 2 8 8 O 1.21286 * 119.99821 * 359.55894 * 7 5 4 9 9 N 1.34778 * 120.00352 * 179.55356 * 7 5 4 10 10 C 1.46501 * 119.99860 * 180.02562 * 9 7 5 11 11 C 1.53943 * 113.74362 * 253.74427 * 10 9 7 12 12 N 1.47812 * 86.03545 * 222.08987 * 11 10 9 13 13 C 1.36939 * 134.45669 * 204.64930 * 12 11 10 14 14 H 1.07992 * 120.00205 * 179.86307 * 13 12 11 15 15 C 1.38816 * 119.99659 * 359.86136 * 13 12 11 16 16 N 1.31621 * 119.99938 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47306 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47371 * 119.99445 * 17 15 13 20 20 H 1.48501 * 109.47185 * 239.99672 * 17 15 13 21 21 C 1.47583 * 91.05444 * 24.54720 * 12 11 10 22 22 C 1.53177 * 109.03858 * 56.98247 * 5 4 2 23 23 C 1.53096 * 109.16164 * 303.01870 * 22 5 4 24 24 O 1.42897 * 109.47704 * 120.03628 * 2 1 3 25 25 H 1.08998 * 109.47143 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47122 * 300.02431 * 1 2 3 27 27 H 1.09006 * 109.46531 * 60.02150 * 1 2 3 28 28 H 1.09002 * 109.52149 * 62.50115 * 4 2 1 29 29 H 1.09007 * 109.52293 * 302.31619 * 4 2 1 30 30 H 0.96999 * 119.99757 * 0.02562 * 9 7 5 31 31 H 1.09000 * 112.94232 * 25.34091 * 10 9 7 32 32 H 1.08998 * 113.76698 * 336.34830 * 11 10 9 33 33 H 1.08990 * 113.77028 * 107.74735 * 11 10 9 34 34 H 0.97002 * 119.99401 * 180.02562 * 16 15 13 35 35 H 1.09000 * 113.77011 * 221.15384 * 21 12 11 36 36 H 1.09000 * 113.87012 * 89.76988 * 21 12 11 37 37 H 1.09003 * 109.52410 * 183.11691 * 22 5 4 38 38 H 1.08996 * 109.52226 * 62.92248 * 22 5 4 39 39 H 1.08993 * 109.48033 * 177.59323 * 23 22 5 40 40 H 1.09001 * 109.48095 * 297.62604 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2496 5 6 3.5710 -0.7708 -1.2122 6 1 3.9405 -1.3316 -2.0708 7 6 4.1212 0.6316 -1.2517 8 8 3.3652 1.5781 -1.3127 9 7 5.4533 0.8342 -1.2192 10 6 5.9880 2.1976 -1.2571 11 6 6.6224 2.5774 -2.6073 12 7 7.6928 3.2118 -1.8094 13 6 8.5906 4.2200 -2.0389 14 1 9.2904 4.5058 -1.2676 15 6 8.6013 4.8746 -3.2630 16 7 7.7488 4.5258 -4.2032 17 14 9.8265 6.2494 -3.5762 18 1 10.6685 6.4467 -2.3690 19 1 10.6903 5.8894 -4.7293 20 1 9.0944 7.5053 -3.8793 21 6 7.4038 2.3247 -0.6660 22 6 4.0176 -1.4602 0.0807 23 6 3.4307 -0.7095 1.2790 24 8 2.0065 -0.6743 1.1663 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5142 0.8898 27 1 -0.3632 0.5135 -0.8903 28 1 1.7149 -0.1841 -2.1399 29 1 1.6443 -1.7374 -1.2711 30 1 6.0579 0.0772 -1.1707 31 1 5.2858 2.9401 -0.8778 32 1 6.9588 1.7205 -3.1910 33 1 6.0290 3.2830 -3.1885 34 1 7.7566 4.9830 -5.0587 35 1 7.4331 2.8291 0.2998 36 1 7.9695 1.3930 -0.6765 37 1 5.1059 -1.4499 0.1419 38 1 3.6612 -2.4902 0.0861 39 1 3.7100 -1.2206 2.2003 40 1 3.8193 0.3087 1.2959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031158712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:28 Heat of formation + Delta-G solvation = -60.563259 kcal Electronic energy + Delta-G solvation = -21175.205895 eV Core-core repulsion = 17990.450084 eV Total energy + Delta-G solvation = -3184.755811 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.71613 -40.00380 -38.73271 -35.30743 -34.65168 -33.85762 -33.28553 -29.49890 -28.79099 -26.64840 -26.12896 -24.70271 -23.58984 -22.49588 -21.38103 -20.46861 -18.80443 -17.74820 -17.37727 -17.23767 -16.99872 -16.93934 -16.09134 -15.74755 -15.52370 -15.14036 -14.79903 -14.61052 -13.80518 -13.63790 -13.41142 -13.31293 -13.26088 -13.18546 -12.91610 -12.85116 -12.75097 -12.64092 -12.29720 -12.00120 -11.92142 -11.65986 -11.56972 -11.38875 -10.92547 -10.74850 -10.21395 -9.92020 -8.99676 -7.94481 -5.29862 1.44462 1.46216 1.56512 1.65058 2.17072 2.48867 2.88700 3.23674 3.36977 3.59618 3.74982 3.80897 3.87357 4.00858 4.13057 4.31394 4.34770 4.45027 4.51334 4.58646 4.72234 4.72628 4.75754 4.83934 4.87487 4.90735 4.99894 5.07414 5.13061 5.15110 5.21158 5.27707 5.35207 5.45933 5.70399 5.87266 6.33365 6.62844 6.86026 7.32493 7.55888 8.48618 9.22579 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.041293 B = 0.003902 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.910639 B = 7173.200741 C = 7411.882259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.070 3.930 3 H 0.050 0.950 4 C -0.125 4.125 5 C -0.108 4.108 6 H 0.128 0.872 7 C 0.509 3.491 8 O -0.582 6.582 9 N -0.702 5.702 10 C 0.121 3.879 11 C 0.152 3.848 12 N -0.640 5.640 13 C -0.235 4.235 14 H 0.091 0.909 15 C -0.069 4.069 16 N -0.956 5.956 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.291 1.291 20 H -0.294 1.294 21 C 0.123 3.877 22 C -0.138 4.138 23 C 0.051 3.949 24 O -0.395 6.395 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.415 0.585 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.030 0.970 34 H 0.248 0.752 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.117 0.883 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.086 -16.481 9.323 21.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 H 0.068 0.932 4 C -0.163 4.163 5 C -0.130 4.130 6 H 0.146 0.854 7 C 0.297 3.703 8 O -0.462 6.462 9 N -0.353 5.353 10 C 0.015 3.985 11 C 0.026 3.974 12 N -0.367 5.367 13 C -0.364 4.364 14 H 0.108 0.892 15 C -0.262 4.262 16 N -0.605 5.605 17 Si 0.810 3.190 18 H -0.185 1.185 19 H -0.218 1.218 20 H -0.221 1.221 21 C -0.002 4.002 22 C -0.175 4.175 23 C -0.025 4.025 24 O -0.315 6.315 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.117 0.883 30 H 0.252 0.748 31 H 0.105 0.895 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.135 0.865 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -9.570 -15.646 9.272 20.551 hybrid contribution 1.134 1.010 -0.933 1.782 sum -8.435 -14.637 8.339 18.840 Atomic orbital electron populations 1.21731 0.92139 1.03223 1.02504 1.22340 0.95966 0.95498 0.84942 0.93246 1.21989 0.93300 1.02472 0.98567 1.21531 0.97250 0.91676 1.02501 0.85432 1.21360 0.82116 0.92387 0.74405 1.90653 1.58529 1.45883 1.51138 1.45911 1.07041 1.08507 1.73883 1.23089 0.94145 0.84030 0.97272 1.22585 0.87907 0.93698 0.93249 1.46064 1.39833 1.36864 1.13916 1.19485 1.10250 1.07861 0.98768 0.89159 1.25714 1.01592 1.02763 0.96098 1.70050 1.40041 1.44885 1.05489 0.84951 0.77961 0.78082 0.77961 1.18488 1.21772 1.22098 1.23006 0.91118 0.94094 0.92033 1.22206 1.02699 1.00922 0.91690 1.22731 0.80695 0.99078 1.00017 1.87855 1.21764 1.78005 1.43880 0.90803 0.92429 0.90655 0.91293 0.88258 0.74794 0.89539 0.95540 0.95156 0.94274 0.91947 0.91400 0.88207 0.87631 0.86530 0.95513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.56 71.98 0.69 -2.12 16 2 C 0.07 1.73 2.98 30.63 0.09 1.82 16 3 H 0.05 1.59 5.82 -2.39 -0.01 1.58 16 4 C -0.13 -2.61 4.56 30.68 0.14 -2.47 16 5 C -0.11 -2.11 3.04 -11.42 -0.03 -2.15 16 6 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 7 C 0.51 14.85 5.82 87.66 0.51 15.36 16 8 O -0.58 -22.53 13.48 -3.05 -0.04 -22.57 16 9 N -0.70 -19.72 5.25 -447.39 -2.35 -22.07 16 10 C 0.12 4.64 4.40 46.75 0.21 4.84 16 11 C 0.15 7.45 7.33 86.44 0.63 8.09 16 12 N -0.64 -32.83 3.70 -716.76 -2.65 -35.48 16 13 C -0.24 -13.25 10.70 84.03 0.90 -12.35 16 14 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 15 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 16 N -0.96 -59.17 11.39 21.65 0.25 -58.93 16 17 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 18 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 20 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 21 C 0.12 4.62 8.69 86.49 0.75 5.38 16 22 C -0.14 -1.99 5.57 30.69 0.17 -1.82 16 23 C 0.05 1.01 6.62 72.01 0.48 1.48 16 24 O -0.40 -9.61 10.41 -148.98 -1.55 -11.16 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.07 1.60 8.02 -2.39 -0.02 1.58 16 29 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.41 8.53 8.10 -92.71 -0.75 7.78 16 31 H 0.09 3.76 7.51 -2.39 -0.02 3.74 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 1.74 7.16 -2.39 -0.02 1.72 16 34 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.17 8.11 -2.39 -0.02 2.16 16 37 H 0.10 1.05 7.50 -2.39 -0.02 1.04 16 38 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.03 0.65 7.38 -2.39 -0.02 0.63 16 Total: -1.00 -74.53 318.87 0.96 -73.58 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.28 Total: 15.99 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 5.00 Total: 12.56 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -4.76 Total: -116.48 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -1.59 Total: -33.73 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -74.53 0.96 -73.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031158712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.015 kcal (2) G-P(sol) polarization free energy of solvation -74.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds