Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.55835 * 2 1 4 4 C 1.53069 * 117.49208 * 145.70561 * 2 1 3 5 5 C 1.52997 * 117.50296 * 214.30863 * 2 1 3 6 6 H 1.09005 * 117.49741 * 0.02569 * 5 2 1 7 7 C 1.50699 * 117.49918 * 145.02027 * 5 2 1 8 8 O 1.21282 * 120.00222 * 359.91675 * 7 5 2 9 9 N 1.34772 * 119.99875 * 179.91449 * 7 5 2 10 10 C 1.46507 * 119.99902 * 180.02562 * 9 7 5 11 11 C 1.53003 * 109.46954 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.67854 * 59.93501 * 11 10 9 13 13 C 1.53296 * 109.68040 * 180.49526 * 11 10 9 14 14 O 1.42955 * 109.22444 * 172.02795 * 13 11 10 15 15 C 1.42963 * 114.16241 * 297.41508 * 14 13 11 16 16 C 1.52878 * 109.30105 * 62.44945 * 15 14 13 17 17 N 1.47155 * 108.60726 * 307.93564 * 16 15 14 18 18 C 1.36931 * 120.98004 * 230.49893 * 17 16 15 19 19 H 1.07999 * 119.99865 * 148.54996 * 18 17 16 20 20 C 1.38812 * 120.00397 * 328.82156 * 18 17 16 21 21 N 1.31616 * 120.00175 * 163.81305 * 20 18 17 22 22 Si 1.86801 * 119.99543 * 343.81541 * 20 18 17 23 23 H 1.48507 * 109.47151 * 86.07352 * 22 20 18 24 24 H 1.48506 * 109.46829 * 206.07105 * 22 20 18 25 25 H 1.48498 * 109.47442 * 326.07277 * 22 20 18 26 26 H 1.09002 * 109.47196 * 205.68512 * 1 2 3 27 27 H 1.08997 * 109.47444 * 325.68969 * 1 2 3 28 28 H 1.09009 * 109.46737 * 85.69023 * 1 2 3 29 29 H 1.08997 * 117.49685 * 0.02562 * 4 2 1 30 30 H 1.09005 * 117.53483 * 214.95783 * 4 2 1 31 31 H 0.97003 * 120.00613 * 0.02562 * 9 7 5 32 32 H 1.08994 * 109.47069 * 60.00109 * 10 9 7 33 33 H 1.09004 * 109.46875 * 299.99952 * 10 9 7 34 34 H 1.09010 * 109.50931 * 291.94922 * 13 11 10 35 35 H 1.08998 * 109.51417 * 52.04225 * 13 11 10 36 36 H 1.09005 * 109.51275 * 182.50850 * 15 14 13 37 37 H 1.09005 * 109.51672 * 302.65379 * 15 14 13 38 38 H 1.08996 * 109.62275 * 188.11531 * 16 15 14 39 39 H 1.08996 * 109.52215 * 67.69898 * 16 15 14 40 40 H 0.96995 * 119.99971 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1218 0.7651 5 6 2.2366 -1.1210 -0.7649 6 1 1.6113 -1.8583 -1.2686 7 6 3.5294 -0.7810 -1.4607 8 8 3.9711 0.3470 -1.4024 9 7 4.1948 -1.7306 -2.1477 10 6 5.4519 -1.4003 -2.8237 11 6 5.9969 -2.6465 -3.5244 12 1 5.2731 -3.0011 -4.2581 13 6 7.3190 -2.3092 -4.2231 14 8 7.9122 -3.5135 -4.7147 15 6 8.2569 -4.4545 -3.6951 16 6 6.9879 -4.8991 -2.9678 17 7 6.2530 -3.7014 -2.5309 18 6 5.8251 -3.5700 -1.2368 19 1 5.7629 -2.5909 -0.7854 20 6 5.4767 -4.6958 -0.5032 21 7 5.3750 -4.6221 0.8069 22 14 5.1522 -6.3154 -1.3756 23 1 6.4343 -7.0399 -1.5674 24 1 4.2332 -7.1443 -0.5548 25 1 4.5313 -6.0496 -2.6981 26 1 -0.3634 -0.9261 0.4454 27 1 -0.3634 0.8488 0.5792 28 1 -0.3633 0.0772 -1.0249 29 1 1.6113 -1.8596 1.2677 30 1 3.1720 -0.8769 1.2684 31 1 3.8414 -2.6327 -2.1947 32 1 6.1774 -1.0489 -2.0901 33 1 5.2730 -0.6180 -3.5614 34 1 7.1284 -1.6313 -5.0552 35 1 7.9950 -1.8329 -3.5131 36 1 8.7413 -5.3200 -4.1472 37 1 8.9368 -3.9869 -2.9828 38 1 7.2555 -5.5024 -2.1003 39 1 6.3662 -5.4846 -3.6450 40 1 5.1319 -5.4088 1.3195 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051071753.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -27.706410 kcal Electronic energy + Delta-G solvation = -21662.566016 eV Core-core repulsion = 18479.234985 eV Total energy + Delta-G solvation = -3183.331031 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.57312 -38.71321 -36.54398 -35.30586 -33.61650 -31.74319 -31.03983 -28.63753 -27.56635 -25.87021 -23.53373 -23.18477 -21.96075 -20.48104 -19.96148 -19.29249 -17.25430 -16.43505 -16.09703 -15.86810 -15.13503 -15.00255 -14.59309 -14.30032 -14.06696 -13.91505 -13.43319 -13.33989 -12.98371 -12.59342 -12.45856 -12.15988 -11.89592 -11.70642 -11.57556 -11.17265 -11.13967 -10.78756 -10.55920 -10.38009 -10.00600 -9.84386 -9.78391 -9.65810 -9.46608 -9.13095 -8.70067 -8.24864 -7.03493 -6.05776 -3.50023 3.11181 3.20258 3.37535 3.38852 3.71798 4.22548 4.29802 4.39535 4.63787 5.01941 5.10197 5.19287 5.21752 5.42937 5.48207 5.50263 5.57521 5.66795 5.77821 5.84458 5.84967 5.88167 5.90035 6.02468 6.08653 6.10790 6.14367 6.24051 6.33378 6.37599 6.49577 6.53954 6.71429 7.14915 7.57859 7.79725 8.22348 8.28594 8.76948 8.91482 9.56406 9.93457 11.08121 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018706 B = 0.007063 C = 0.005528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.492034 B = 3963.536369 C = 5063.889336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.133 4.133 3 H 0.113 0.887 4 C -0.137 4.137 5 C -0.182 4.182 6 H 0.116 0.884 7 C 0.542 3.458 8 O -0.567 6.567 9 N -0.691 5.691 10 C 0.137 3.863 11 C 0.128 3.872 12 H 0.046 0.954 13 C 0.054 3.946 14 O -0.388 6.388 15 C 0.046 3.954 16 C 0.089 3.911 17 N -0.606 5.606 18 C -0.267 4.267 19 H 0.097 0.903 20 C 0.031 3.969 21 N -0.900 5.900 22 Si 0.883 3.117 23 H -0.287 1.287 24 H -0.304 1.304 25 H -0.273 1.273 26 H 0.056 0.944 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.412 0.588 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 3.558 -5.560 7.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.152 4.152 3 H 0.131 0.869 4 C -0.174 4.174 5 C -0.203 4.203 6 H 0.134 0.866 7 C 0.329 3.671 8 O -0.447 6.447 9 N -0.341 5.341 10 C 0.013 3.987 11 C 0.021 3.979 12 H 0.064 0.936 13 C -0.025 4.025 14 O -0.307 6.307 15 C -0.032 4.032 16 C -0.036 4.036 17 N -0.333 5.333 18 C -0.395 4.395 19 H 0.114 0.886 20 C -0.169 4.169 21 N -0.542 5.542 22 Si 0.713 3.287 23 H -0.214 1.214 24 H -0.232 1.232 25 H -0.198 1.198 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.250 0.750 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.050 0.950 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.877 4.219 -5.555 7.981 hybrid contribution -0.263 -1.703 -0.104 1.726 sum -4.141 2.517 -5.660 7.451 Atomic orbital electron populations 1.21372 0.92821 1.01871 1.01694 1.22357 0.94653 0.95162 1.02989 0.86875 1.23014 1.02840 1.00302 0.91248 1.22191 0.97781 1.04059 0.96252 0.86563 1.19510 0.84720 0.84550 0.78362 1.90612 1.69577 1.21677 1.62860 1.45853 1.23077 1.13594 1.51547 1.21119 0.86310 0.95517 0.95799 1.21454 0.95058 0.89655 0.91704 0.93637 1.22910 0.94476 0.86629 0.98457 1.87826 1.80816 1.28737 1.33296 1.22991 0.97276 0.92213 0.90721 1.22001 0.92371 0.90756 0.98444 1.44423 1.63807 1.17481 1.07587 1.19008 1.39481 0.95719 0.85314 0.88568 1.25335 0.98644 0.97629 0.95303 1.69787 1.50058 1.29802 1.04570 0.87023 0.77558 0.84720 0.79353 1.21433 1.23168 1.19792 0.92488 0.92093 0.92335 0.88167 0.88115 0.75036 0.91280 0.92191 0.89374 0.92923 0.89735 0.93043 0.89918 0.94951 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.34 10.19 37.16 0.38 -0.96 16 2 C -0.13 -1.92 5.92 -90.58 -0.54 -2.45 16 3 H 0.11 1.77 7.67 -51.93 -0.40 1.37 16 4 C -0.14 -2.17 9.88 -26.70 -0.26 -2.44 16 5 C -0.18 -2.98 5.91 -91.77 -0.54 -3.53 16 6 H 0.12 1.70 8.14 -51.93 -0.42 1.27 16 7 C 0.54 10.58 7.61 -10.99 -0.08 10.50 16 8 O -0.57 -12.52 16.26 5.56 0.09 -12.43 16 9 N -0.69 -13.25 3.77 -60.29 -0.23 -13.48 16 10 C 0.14 2.52 4.45 -4.04 -0.02 2.50 16 11 C 0.13 2.36 3.21 -67.42 -0.22 2.14 16 12 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 13 C 0.05 0.89 6.29 37.31 0.23 1.13 16 14 O -0.39 -6.94 10.74 -35.23 -0.38 -7.32 16 15 C 0.05 0.81 6.97 37.09 0.26 1.07 16 16 C 0.09 1.85 4.35 -3.75 -0.02 1.83 16 17 N -0.61 -13.20 2.78 -164.55 -0.46 -13.66 16 18 C -0.27 -6.69 7.51 -15.06 -0.11 -6.81 16 19 H 0.10 2.65 6.02 -52.49 -0.32 2.33 16 20 C 0.03 0.82 5.29 -17.43 -0.09 0.73 16 21 N -0.90 -25.59 13.97 55.49 0.78 -24.81 16 22 Si 0.88 20.86 24.28 -169.99 -4.13 16.74 16 23 H -0.29 -6.61 6.42 56.52 0.36 -6.25 16 24 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.27 -6.35 6.80 56.52 0.38 -5.97 16 26 H 0.06 0.59 7.90 -51.93 -0.41 0.18 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.10 1.44 8.05 -51.93 -0.42 1.02 16 30 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 31 H 0.41 8.09 7.31 -40.82 -0.30 7.79 16 32 H 0.07 1.42 7.57 -51.93 -0.39 1.03 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.83 4.86 -51.93 -0.25 1.58 16 39 H 0.03 0.68 6.90 -51.93 -0.36 0.32 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 315.70 15.07 4.76 4.76 Total: -1.00 -29.82 315.70 -6.84 -36.66 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -6.26 Total: 9.83 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: -1.01 Total: 3.72 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: 0.09 Total: -51.95 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.29 Total: -19.75 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.13 Total: 16.74 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.82 -6.84 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051071753.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.954 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds