Wall clock time and date at job start Mon Mar 30 2020 01:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99847 * 2 1 4 4 O 1.42900 * 109.46859 * 135.00354 * 3 2 1 5 5 C 1.42900 * 113.99771 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.46923 * 180.02562 * 5 4 3 7 7 O 1.21278 * 119.99995 * 359.97438 * 6 5 4 8 8 N 1.34782 * 119.99703 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99726 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47007 * 34.99037 * 9 8 6 11 11 C 1.52996 * 109.47012 * 154.99585 * 9 8 6 12 12 N 1.46498 * 109.47059 * 304.99483 * 11 9 8 13 13 C 1.36943 * 119.99752 * 179.72430 * 12 11 9 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 C 1.53003 * 109.46609 * 274.99704 * 9 8 6 22 22 C 1.52996 * 117.49852 * 128.74926 * 21 9 8 23 23 C 1.52995 * 117.50233 * 60.08634 * 21 9 8 24 24 H 1.08001 * 119.99683 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00503 * 359.97438 * 1 2 3 26 26 H 1.08004 * 120.00108 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46935 * 15.00418 * 3 2 1 28 28 H 1.09001 * 109.47581 * 255.00260 * 3 2 1 29 29 H 1.09000 * 109.47866 * 60.00012 * 5 4 3 30 30 H 1.09006 * 109.46916 * 299.99612 * 5 4 3 31 31 H 0.97000 * 119.99883 * 359.97438 * 8 6 5 32 32 H 1.09004 * 109.47066 * 184.99751 * 11 9 8 33 33 H 1.08994 * 109.46974 * 64.99899 * 11 9 8 34 34 H 0.97001 * 120.00384 * 0.02562 * 12 11 9 35 35 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 36 36 H 1.09006 * 115.54473 * 274.41180 * 21 9 8 37 37 H 1.08997 * 117.49676 * 359.97438 * 22 21 9 38 38 H 1.08999 * 117.49788 * 145.01561 * 22 21 9 39 39 H 1.09001 * 117.49820 * 214.97543 * 23 21 9 40 40 H 1.09004 * 117.49643 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2412 0.9526 5 6 3.9077 2.4352 1.0328 6 6 4.9941 2.2567 2.0619 7 8 5.0898 1.2102 2.6673 8 7 5.8587 3.2604 2.3101 9 6 6.9145 3.0870 3.3109 10 1 7.2640 2.0546 3.2952 11 6 8.0800 4.0250 2.9904 12 7 8.5326 3.7898 1.6171 13 6 9.5692 4.5224 1.1030 14 1 10.0558 5.2703 1.7115 15 6 9.9944 4.3036 -0.2002 16 7 10.9909 5.0073 -0.6941 17 14 9.1521 3.0105 -1.2527 18 1 8.0219 3.6310 -1.9894 19 1 10.1270 2.4501 -2.2227 20 1 8.6381 1.9221 -0.3829 21 6 6.3609 3.4169 4.6986 22 6 6.5773 2.3867 5.8088 23 6 5.1837 2.5820 5.2064 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3854 2.1161 0.2661 28 1 2.4755 1.4869 -0.9926 29 1 3.2678 3.2694 1.3205 30 1 4.3579 2.6408 0.0616 31 1 5.7819 4.0975 1.8261 32 1 8.9010 3.8336 3.6814 33 1 7.7525 5.0595 3.0930 34 1 8.0954 3.1183 1.0705 35 1 11.2883 4.8541 -1.6047 36 1 6.3881 4.4704 4.9772 37 1 7.1137 1.4737 5.5505 38 1 6.7465 2.7623 6.8179 39 1 4.4366 3.0861 5.8195 40 1 4.8033 1.7979 4.5517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269049870.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:37 Heat of formation + Delta-G solvation = -40.553335 kcal Electronic energy + Delta-G solvation = -20525.017612 eV Core-core repulsion = 17341.129497 eV Total energy + Delta-G solvation = -3183.888115 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18801 -39.18940 -38.12428 -36.76414 -35.04317 -34.77149 -33.36388 -30.71597 -28.82057 -26.49801 -25.60454 -23.28925 -23.01287 -22.06111 -21.35787 -20.89671 -19.82194 -18.35089 -17.79723 -17.47559 -17.00571 -16.72483 -16.42454 -16.08865 -15.80569 -15.37934 -14.81837 -14.78836 -14.69312 -14.04057 -13.91538 -13.56821 -13.20389 -13.13245 -12.90409 -12.72664 -12.56771 -12.26305 -12.13741 -11.90943 -11.85170 -11.28673 -11.12719 -11.03608 -10.99518 -10.73338 -10.28083 -10.02051 -9.33615 -8.04355 -5.37978 1.17918 1.33605 1.38330 1.44181 1.55725 1.87303 2.45010 2.87104 3.15676 3.27696 3.41296 3.73474 3.85609 4.02616 4.05313 4.13717 4.14092 4.20371 4.25717 4.27465 4.40846 4.44246 4.58846 4.59641 4.82365 4.88926 4.96729 5.04088 5.07540 5.28268 5.35511 5.51454 5.64352 5.67955 5.75074 6.05993 6.19106 6.56195 7.05008 7.23190 7.80006 7.98500 9.16994 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.013466 B = 0.005624 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.881986 B = 4977.673391 C = 6772.285923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.178 4.178 3 C 0.082 3.918 4 O -0.393 6.393 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.563 6.563 8 N -0.706 5.706 9 C 0.176 3.824 10 H 0.062 0.938 11 C 0.154 3.846 12 N -0.757 5.757 13 C -0.231 4.231 14 H 0.064 0.936 15 C -0.057 4.057 16 N -0.980 5.980 17 Si 0.947 3.053 18 H -0.266 1.266 19 H -0.298 1.298 20 H -0.269 1.269 21 C -0.163 4.163 22 C -0.167 4.167 23 C -0.182 4.182 24 H 0.116 0.884 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.414 0.586 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.364 0.636 35 H 0.258 0.742 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.883 -4.293 5.593 22.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.196 4.196 3 C 0.006 3.994 4 O -0.312 6.312 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.442 6.442 8 N -0.359 5.359 9 C 0.072 3.928 10 H 0.081 0.919 11 C 0.028 3.972 12 N -0.403 5.403 13 C -0.362 4.362 14 H 0.082 0.918 15 C -0.249 4.249 16 N -0.631 5.631 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.225 1.225 20 H -0.194 1.194 21 C -0.182 4.182 22 C -0.205 4.205 23 C -0.219 4.219 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.122 0.878 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.251 0.749 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.197 0.803 35 H 0.067 0.933 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.133 0.867 39 H 0.122 0.878 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.616 -5.035 6.138 23.027 hybrid contribution 0.219 -0.209 -1.282 1.317 sum -21.396 -5.244 4.855 22.559 Atomic orbital electron populations 1.24059 0.94821 1.03600 0.97570 1.22770 0.96419 0.97885 1.02571 1.21816 0.88365 0.96901 0.92318 1.87991 1.45435 1.36151 1.61601 1.22327 0.92878 0.89689 0.98666 1.20773 0.82764 0.83390 0.83411 1.90629 1.73432 1.28588 1.51526 1.45867 1.30846 1.17725 1.41472 1.20603 0.86302 0.99287 0.86650 0.91941 1.21026 0.93665 0.97253 0.85290 1.42694 1.39968 1.45226 1.12407 1.19039 1.07664 1.13398 0.96126 0.91816 1.25389 0.99198 1.01650 0.98642 1.69859 1.31303 1.45421 1.16503 0.85537 0.78305 0.79779 0.78876 1.19170 1.22478 1.19427 1.22562 1.04016 0.98345 0.93313 1.22992 0.99495 0.99925 0.98059 1.23191 0.91670 1.03153 1.03879 0.86597 0.86842 0.87776 0.90508 0.91185 0.86760 0.88548 0.74941 0.94038 0.93187 0.80292 0.93283 0.85771 0.90055 0.86675 0.87774 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 14.31 67.78 0.97 -1.21 16 2 C -0.18 -3.25 9.89 25.65 0.25 -3.00 16 3 C 0.08 1.49 6.35 71.24 0.45 1.94 16 4 O -0.39 -10.34 9.86 -129.94 -1.28 -11.62 16 5 C 0.04 0.96 6.42 71.24 0.46 1.42 16 6 C 0.51 15.07 7.24 87.66 0.63 15.70 16 7 O -0.56 -21.23 13.52 16.02 0.22 -21.01 16 8 N -0.71 -19.42 4.50 -442.51 -1.99 -21.41 16 9 C 0.18 5.39 2.43 44.99 0.11 5.50 16 10 H 0.06 2.26 7.34 -2.39 -0.02 2.25 16 11 C 0.15 5.44 5.80 86.38 0.50 5.94 16 12 N -0.76 -33.95 5.24 -343.46 -1.80 -35.74 16 13 C -0.23 -12.77 10.47 84.03 0.88 -11.89 16 14 H 0.06 3.82 8.06 -2.91 -0.02 3.79 16 15 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 16 N -0.98 -61.72 13.97 21.65 0.30 -61.42 16 17 Si 0.95 45.14 27.74 68.60 1.90 47.04 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 20 H -0.27 -12.28 6.52 99.48 0.65 -11.63 16 21 C -0.16 -4.08 5.36 -10.80 -0.06 -4.14 16 22 C -0.17 -4.01 10.18 30.62 0.31 -3.70 16 23 C -0.18 -4.58 9.74 30.62 0.30 -4.28 16 24 H 0.12 1.24 8.06 -2.91 -0.02 1.21 16 25 H 0.11 1.14 7.90 -2.91 -0.02 1.11 16 26 H 0.10 2.11 8.06 -2.91 -0.02 2.09 16 27 H 0.08 1.04 7.86 -2.38 -0.02 1.02 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.41 9.77 8.60 -92.71 -0.80 8.98 16 32 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.36 16.14 5.20 -92.71 -0.48 15.65 16 35 H 0.26 15.52 8.31 -92.70 -0.77 14.75 16 36 H 0.12 2.69 8.11 -2.38 -0.02 2.67 16 37 H 0.08 2.17 8.05 -2.39 -0.02 2.15 16 38 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 39 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.09 2.88 5.02 -2.38 -0.01 2.87 16 Total: -1.00 -73.05 336.80 2.32 -70.73 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.30 Total: 33.98 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 5.28 Total: -0.54 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -3.49 Total: -118.57 kcal Atomic # 8 Polarization: -31.58 SS G_CDS: -1.06 Total: -32.64 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Total: -73.05 2.32 -70.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269049870.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.175 kcal (2) G-P(sol) polarization free energy of solvation -73.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds