Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50697 * 119.99864 * 2 1 4 4 O 1.42898 * 109.47510 * 135.00078 * 3 2 1 5 5 C 1.42901 * 114.00209 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.35042 * 332.13882 * 5 4 3 7 7 C 1.54596 * 110.30914 * 94.28114 * 5 4 3 8 8 C 1.54939 * 102.92012 * 140.87180 * 7 5 4 9 9 N 1.48534 * 103.22817 * 322.58829 * 8 7 5 10 10 C 1.46899 * 110.99830 * 159.71871 * 9 8 7 11 11 C 1.50703 * 109.47107 * 52.60468 * 10 9 8 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.50701 * 109.47174 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99861 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99594 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99875 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47116 * 90.00386 * 19 17 15 21 21 H 1.48510 * 109.46673 * 210.00091 * 19 17 15 22 22 H 1.48498 * 109.47559 * 329.99678 * 19 17 15 23 23 C 1.47901 * 105.81788 * 39.20526 * 9 8 7 24 24 H 1.07996 * 119.99831 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99790 * 180.02562 * 1 2 3 26 26 H 1.07994 * 119.99979 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47426 * 14.99585 * 3 2 1 28 28 H 1.09006 * 109.46841 * 255.00301 * 3 2 1 29 29 H 1.08998 * 110.72754 * 259.23157 * 7 5 4 30 30 H 1.09003 * 110.72082 * 22.33996 * 7 5 4 31 31 H 1.08996 * 110.66801 * 204.15058 * 8 7 5 32 32 H 1.09001 * 110.66461 * 81.02793 * 8 7 5 33 33 H 1.09002 * 109.47043 * 172.60448 * 10 9 8 34 34 H 1.09001 * 109.47354 * 292.60510 * 10 9 8 35 35 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 36 36 H 1.09002 * 109.47021 * 299.99722 * 14 13 11 37 37 H 1.09001 * 109.47001 * 59.99554 * 14 13 11 38 38 H 0.97002 * 119.99739 * 179.97438 * 18 17 15 39 39 H 1.08999 * 109.91618 * 94.02396 * 23 9 8 40 40 H 1.09004 * 109.91578 * 215.11495 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2414 0.9526 5 6 3.9084 2.4350 1.0320 6 1 3.8924 2.9627 0.0783 7 6 3.3785 3.3494 2.1603 8 6 4.6778 3.9163 2.7857 9 7 5.6131 2.7637 2.7294 10 6 7.0084 3.2131 2.8241 11 6 7.1718 4.0925 4.0370 12 8 6.2194 4.3227 4.7517 13 7 8.3759 4.6240 4.3268 14 6 8.5348 5.4785 5.5061 15 6 9.9663 5.9395 5.6032 16 1 10.6858 5.6270 4.8609 17 6 10.3576 6.7595 6.6402 18 7 11.6069 7.1614 6.7252 19 14 9.1132 7.2996 7.9245 20 1 9.0930 6.3173 9.0379 21 1 9.4924 8.6358 8.4500 22 1 7.7650 7.3752 7.3065 23 6 5.3569 2.0997 1.4329 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3855 2.1161 0.2659 28 1 2.4755 1.4868 -0.9927 29 1 2.7656 4.1522 1.7504 30 1 2.8150 2.7713 2.8926 31 1 4.5062 4.2224 3.8177 32 1 5.0577 4.7494 2.1944 33 1 7.6639 2.3466 2.9126 34 1 7.2703 3.7768 1.9287 35 1 9.1375 4.4402 3.7548 36 1 7.8789 6.3446 5.4182 37 1 8.2736 4.9143 6.4014 38 1 11.8821 7.7386 7.4546 39 1 6.0477 2.4776 0.6792 40 1 5.4760 1.0213 1.5381 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320038668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = -73.287426 kcal Electronic energy + Delta-G solvation = -19985.822614 eV Core-core repulsion = 16800.515042 eV Total energy + Delta-G solvation = -3185.307572 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.10199 -39.84968 -37.94305 -36.12066 -34.73151 -34.42398 -32.59457 -30.22305 -29.59757 -27.34302 -26.51594 -24.04607 -22.43871 -21.88397 -21.47060 -20.78306 -19.15425 -18.24148 -17.63003 -17.39316 -16.88721 -16.60797 -16.26488 -15.91199 -15.69052 -15.37138 -15.04097 -14.62060 -14.47008 -14.23273 -14.03840 -13.59691 -13.31130 -13.12622 -13.00376 -12.81328 -12.68285 -12.49028 -12.33329 -11.94039 -11.85677 -11.66139 -11.59791 -10.92577 -10.90274 -10.51020 -10.19098 -9.92057 -9.38345 -8.40608 -6.47443 1.25337 1.32352 1.34554 1.46850 1.72499 2.26748 2.30344 2.81452 2.94765 3.06034 3.61731 3.68895 3.95676 4.00851 4.15499 4.20874 4.25241 4.32088 4.42691 4.46374 4.59435 4.61815 4.63739 4.79013 4.85073 4.86076 5.02390 5.02915 5.10642 5.15702 5.26706 5.56484 5.67325 5.74622 5.82928 5.92572 6.10294 6.32302 6.53764 6.85716 7.15598 7.43373 8.74017 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.057166 B = 0.002892 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.686011 B = 9678.091353 C =10001.611916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.171 4.171 3 C 0.082 3.918 4 O -0.391 6.391 5 C 0.084 3.916 6 H 0.093 0.907 7 C -0.141 4.141 8 C 0.035 3.965 9 N -0.520 5.520 10 C 0.037 3.963 11 C 0.498 3.502 12 O -0.579 6.579 13 N -0.706 5.706 14 C 0.234 3.766 15 C -0.546 4.546 16 H 0.060 0.940 17 C 0.025 3.975 18 N -0.931 5.931 19 Si 0.938 3.062 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.261 1.261 23 C 0.038 3.962 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.113 0.887 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.409 0.591 36 H 0.012 0.988 37 H 0.009 0.991 38 H 0.272 0.728 39 H 0.078 0.922 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.550 -11.293 -17.274 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.190 4.190 3 C 0.007 3.993 4 O -0.310 6.310 5 C 0.026 3.974 6 H 0.111 0.889 7 C -0.179 4.179 8 C -0.093 4.093 9 N -0.246 5.246 10 C -0.094 4.094 11 C 0.285 3.715 12 O -0.460 6.460 13 N -0.357 5.357 14 C 0.110 3.890 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.175 4.175 18 N -0.569 5.569 19 Si 0.762 3.238 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.185 1.185 23 C -0.090 4.090 24 H 0.124 0.876 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.144 0.856 34 H 0.110 0.890 35 H 0.245 0.755 36 H 0.030 0.970 37 H 0.027 0.973 38 H 0.081 0.919 39 H 0.096 0.904 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.114 -11.533 -16.117 27.534 hybrid contribution 0.505 1.124 -0.034 1.232 sum -18.609 -10.409 -16.150 26.748 Atomic orbital electron populations 1.24049 0.95293 1.03270 0.98390 1.22821 0.96191 0.98114 1.01828 1.21739 0.88878 0.96272 0.92438 1.87986 1.44948 1.36919 1.61172 1.22987 0.90379 0.85612 0.98454 0.88892 1.23022 0.97142 0.99393 0.98330 1.23308 0.92167 0.91810 1.01976 1.64605 1.02554 1.24620 1.32780 1.22244 0.92575 0.99541 0.95051 1.21198 0.82350 0.80395 0.87563 1.90588 1.39987 1.62455 1.52971 1.46010 1.11222 1.49613 1.28807 1.19057 0.95521 0.89541 0.84862 1.21303 0.93867 1.31130 1.12120 0.92160 1.25612 0.96984 0.95327 0.99603 1.69981 1.17846 1.35686 1.33426 0.85846 0.79853 0.78482 0.79623 1.19154 1.19794 1.18488 1.23029 0.95067 1.01315 0.89567 0.87624 0.86660 0.86886 0.92224 0.91002 0.89192 0.91348 0.90149 0.93848 0.85589 0.89041 0.75524 0.96984 0.97322 0.91857 0.90379 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 14.31 67.77 0.97 -1.00 16 2 C -0.17 -2.46 9.89 25.64 0.25 -2.21 16 3 C 0.08 1.22 6.19 71.23 0.44 1.66 16 4 O -0.39 -8.06 9.92 -148.98 -1.48 -9.54 16 5 C 0.08 1.56 3.47 31.47 0.11 1.66 16 6 H 0.09 1.25 7.82 -2.39 -0.02 1.23 16 7 C -0.14 -3.06 6.80 31.80 0.22 -2.85 16 8 C 0.03 0.97 5.30 86.65 0.46 1.43 16 9 N -0.52 -14.04 5.26 -887.57 -4.67 -18.70 16 10 C 0.04 0.94 5.52 85.56 0.47 1.41 16 11 C 0.50 18.31 7.54 87.66 0.66 18.97 16 12 O -0.58 -25.88 13.52 -3.02 -0.04 -25.92 16 13 N -0.71 -27.81 5.55 -466.79 -2.59 -30.40 16 14 C 0.23 11.48 4.50 85.63 0.38 11.87 16 15 C -0.55 -30.13 9.83 25.60 0.25 -29.88 16 16 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 17 C 0.03 1.42 5.47 84.66 0.46 1.88 16 18 N -0.93 -55.60 13.96 21.45 0.30 -55.30 16 19 Si 0.94 44.33 27.47 68.60 1.88 46.21 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 H -0.26 -12.20 6.54 99.48 0.65 -11.55 16 23 C 0.04 0.75 6.51 86.44 0.56 1.31 16 24 H 0.11 1.01 7.90 -2.91 -0.02 0.98 16 25 H 0.12 1.01 8.06 -2.91 -0.02 0.98 16 26 H 0.11 1.64 8.06 -2.91 -0.02 1.62 16 27 H 0.06 0.79 7.86 -2.38 -0.02 0.77 16 28 H 0.07 0.83 8.11 -2.38 -0.02 0.81 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.07 1.72 8.08 -2.39 -0.02 1.70 16 31 H 0.08 2.86 5.97 -2.39 -0.01 2.85 16 32 H 0.04 1.14 8.02 -2.39 -0.02 1.12 16 33 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.09 1.83 7.81 -2.39 -0.02 1.81 16 35 H 0.41 13.87 8.32 -92.70 -0.77 13.10 16 36 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 37 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 38 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 39 H 0.08 1.17 7.57 -2.39 -0.02 1.15 16 40 H 0.09 1.86 7.97 -2.38 -0.02 1.84 16 Total: -1.00 -69.89 330.50 -1.16 -71.05 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.19 Total: 18.34 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 5.24 Total: 4.26 kcal Atomic # 7 Polarization: -97.45 SS G_CDS: -6.96 Total: -104.40 kcal Atomic # 8 Polarization: -33.94 SS G_CDS: -1.52 Total: -35.45 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -69.89 -1.16 -71.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320038668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.241 kcal (2) G-P(sol) polarization free energy of solvation -69.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds