Wall clock time and date at job start Mon Mar 30 2020 01:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08990 * 109.47173 * 2 1 4 4 N 1.46499 * 109.46843 * 120.00201 * 2 1 3 5 5 C 1.34784 * 119.99893 * 274.99901 * 4 2 1 6 6 O 1.21283 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.50697 * 119.99774 * 179.72962 * 5 4 2 8 8 C 1.52999 * 109.46969 * 299.99631 * 7 5 4 9 9 C 1.53003 * 109.47062 * 180.02562 * 8 7 5 10 10 C 1.53003 * 109.46813 * 60.00348 * 9 8 7 11 11 C 1.52999 * 109.47022 * 299.99677 * 10 9 8 12 12 C 1.53003 * 109.47062 * 60.00476 * 11 10 9 13 13 C 1.50705 * 109.47260 * 239.99668 * 2 1 3 14 14 O 1.21288 * 120.00135 * 240.00071 * 13 2 1 15 15 N 1.34776 * 119.99649 * 59.99988 * 13 2 1 16 16 C 1.37097 * 120.00180 * 179.97438 * 15 13 2 17 17 H 1.08004 * 119.99385 * 0.02562 * 16 15 13 18 18 C 1.38946 * 120.00445 * 180.02562 * 16 15 13 19 19 N 1.31418 * 119.99779 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00196 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47126 * 60.00443 * 20 18 16 22 22 H 1.48509 * 109.47413 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47430 * 300.00166 * 20 18 16 24 24 H 1.08997 * 109.47450 * 300.00199 * 1 2 3 25 25 H 1.08998 * 109.47317 * 60.00174 * 1 2 3 26 26 H 1.09007 * 109.47248 * 179.97438 * 1 2 3 27 27 H 0.97005 * 120.00261 * 95.00113 * 4 2 1 28 28 H 1.08993 * 109.47525 * 59.99679 * 7 5 4 29 29 H 1.09001 * 109.47339 * 300.00351 * 8 7 5 30 30 H 1.08996 * 109.47277 * 60.00292 * 8 7 5 31 31 H 1.08993 * 109.47243 * 299.99933 * 9 8 7 32 32 H 1.09001 * 109.46902 * 179.97438 * 9 8 7 33 33 H 1.09003 * 109.46769 * 179.97438 * 10 9 8 34 34 H 1.08993 * 109.47555 * 59.99776 * 10 9 8 35 35 H 1.09001 * 109.47339 * 300.00413 * 11 10 9 36 36 H 1.09006 * 109.47230 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.46902 * 180.02562 * 12 11 10 38 38 H 1.08993 * 109.47243 * 60.00067 * 12 11 10 39 39 H 0.97008 * 120.00021 * 0.02562 * 15 13 2 40 40 H 0.96994 * 119.99841 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0182 -0.6907 1.1962 5 6 2.1469 -0.0183 2.3572 6 8 1.8581 1.1584 2.4117 7 6 2.6434 -0.7302 3.5891 8 6 1.6938 -1.8800 3.9312 9 6 2.1974 -2.6025 5.1823 10 6 2.2496 -1.6187 6.3530 11 6 3.1993 -0.4689 6.0109 12 6 2.6956 0.2535 4.7598 13 6 2.0324 -0.7105 -1.2304 14 8 2.7297 -1.6966 -1.1191 15 7 1.7067 -0.2500 -2.4545 16 6 2.1641 -0.8960 -3.5740 17 1 2.7851 -1.7741 -3.4748 18 6 1.8289 -0.4210 -4.8360 19 7 1.0738 0.6477 -4.9565 20 14 2.4527 -1.3008 -6.3611 21 1 1.9583 -2.7010 -6.3619 22 1 1.9585 -0.6002 -7.5737 23 1 3.9377 -1.3002 -6.3604 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 2.2490 -1.6319 1.1526 28 1 3.6414 -1.1266 3.4024 29 1 0.6957 -1.4836 4.1179 30 1 1.6562 -2.5806 3.0970 31 1 3.1955 -2.9988 4.9959 32 1 1.5206 -3.4213 5.4262 33 1 2.6081 -2.1335 7.2444 34 1 1.2516 -1.2224 6.5393 35 1 4.1975 -0.8653 5.8245 36 1 3.2369 0.2317 6.8451 37 1 3.3725 1.0724 4.5159 38 1 1.6976 0.6499 4.9461 39 1 1.1493 0.5389 -2.5436 40 1 0.8401 0.9795 -5.8375 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330766310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:47 Heat of formation + Delta-G solvation = -110.320030 kcal Electronic energy + Delta-G solvation = -20701.406112 eV Core-core repulsion = 17514.492686 eV Total energy + Delta-G solvation = -3186.913426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.15363 -38.53693 -37.39791 -34.63892 -33.88964 -31.87986 -31.21963 -30.83916 -29.55185 -25.33320 -24.26598 -22.92198 -22.49924 -20.34137 -19.64197 -19.30436 -18.14179 -17.20457 -15.95944 -15.49521 -15.22165 -14.86111 -14.47115 -14.31031 -14.18679 -14.11435 -13.60231 -13.39751 -12.83524 -12.72552 -12.41111 -12.32359 -11.97458 -11.77007 -11.62405 -11.38181 -11.26708 -11.15698 -11.01521 -10.77191 -10.54359 -10.49503 -10.29969 -10.23705 -9.60709 -9.45353 -8.87459 -8.42328 -8.07907 -6.50051 -3.91925 2.88179 3.14557 3.21835 3.24950 3.42102 3.76878 4.12088 4.53892 4.58358 4.61631 4.84376 5.05813 5.06767 5.16712 5.18196 5.27776 5.33966 5.38299 5.48802 5.59261 5.68159 5.70477 5.87072 5.90411 5.92454 5.94919 6.02798 6.07955 6.14506 6.19628 6.26518 6.31804 6.52500 6.79689 7.46992 7.86597 7.94174 8.46583 8.52861 9.06336 9.41722 9.90158 10.66878 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.043097 B = 0.003595 C = 0.003475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.540290 B = 7787.417781 C = 8055.164771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.131 3.869 3 H 0.098 0.902 4 N -0.702 5.702 5 C 0.516 3.484 6 O -0.550 6.550 7 C -0.105 4.105 8 C -0.111 4.111 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.120 4.120 12 C -0.098 4.098 13 C 0.432 3.568 14 O -0.596 6.596 15 N -0.549 5.549 16 C -0.305 4.305 17 H 0.104 0.896 18 C 0.026 3.974 19 N -0.896 5.896 20 Si 0.933 3.067 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.273 1.273 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.408 0.592 28 H 0.096 0.904 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.395 0.605 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.050 -2.959 17.712 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.116 0.884 4 N -0.354 5.354 5 C 0.302 3.698 6 O -0.428 6.428 7 C -0.126 4.126 8 C -0.149 4.149 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.157 4.157 12 C -0.136 4.136 13 C 0.218 3.782 14 O -0.483 6.483 15 N -0.183 5.183 16 C -0.435 4.435 17 H 0.122 0.878 18 C -0.177 4.177 19 N -0.536 5.536 20 Si 0.760 3.240 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.245 0.755 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.229 0.771 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.129 -2.666 17.597 17.799 hybrid contribution 0.065 -0.329 -1.038 1.091 sum 0.194 -2.996 16.559 16.829 Atomic orbital electron populations 1.22088 0.94031 1.02476 1.02687 1.20656 0.94762 0.97569 0.84805 0.88383 1.45788 1.66261 1.14808 1.08576 1.20619 0.77501 0.87196 0.84485 1.90665 1.50665 1.16125 1.85321 1.21331 1.01055 0.97017 0.93234 1.21536 0.98765 0.96235 0.98393 1.21528 1.01583 0.97795 0.94614 1.21564 1.00012 0.96541 0.97757 1.21566 0.99120 0.97433 0.97621 1.21330 1.02628 0.96974 0.92654 1.19785 0.86321 0.87676 0.84449 1.90494 1.42848 1.28746 1.86171 1.41810 1.45018 1.27392 1.04115 1.19685 1.29702 1.11087 0.83015 0.87790 1.25309 0.96612 0.96367 0.99395 1.69606 1.36033 1.22522 1.25446 0.85881 0.79184 0.79164 0.79785 1.19793 1.20864 1.19802 0.92034 0.90937 0.92239 0.75546 0.88575 0.91383 0.91180 0.91698 0.91725 0.92141 0.91957 0.91952 0.91835 0.91277 0.91235 0.77097 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.38 37.16 0.35 -2.21 16 2 C 0.13 2.47 2.98 -69.08 -0.21 2.26 16 3 H 0.10 1.91 7.58 -51.93 -0.39 1.52 16 4 N -0.70 -11.75 4.84 -54.93 -0.27 -12.02 16 5 C 0.52 8.16 7.12 -10.98 -0.08 8.08 16 6 O -0.55 -10.37 15.64 5.56 0.09 -10.28 16 7 C -0.11 -1.24 2.53 -91.77 -0.23 -1.47 16 8 C -0.11 -1.12 5.10 -26.73 -0.14 -1.26 16 9 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 10 C -0.12 -0.96 5.92 -26.73 -0.16 -1.11 16 11 C -0.12 -1.03 5.92 -26.73 -0.16 -1.18 16 12 C -0.10 -1.08 4.49 -26.73 -0.12 -1.20 16 13 C 0.43 10.07 7.17 -10.98 -0.08 9.99 16 14 O -0.60 -15.48 15.41 5.55 0.09 -15.39 16 15 N -0.55 -13.72 5.18 -10.96 -0.06 -13.77 16 16 C -0.31 -8.36 9.68 -14.93 -0.14 -8.50 16 17 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 20 Si 0.93 20.63 29.55 -169.99 -5.02 15.61 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.07 1.19 7.56 -51.93 -0.39 0.80 16 26 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.41 6.60 7.22 -40.82 -0.29 6.30 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.70 7.57 -51.93 -0.39 0.31 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 38 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.40 9.53 7.32 -40.82 -0.30 9.23 16 40 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 327.06 15.07 4.93 4.93 Total: -1.00 -30.57 327.06 -7.09 -37.67 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -6.35 Total: 13.67 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.22 Total: 2.86 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.40 Total: -49.05 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: 0.17 Total: -25.68 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.57 -7.09 -37.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330766310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.655 kcal (2) G-P(sol) polarization free energy of solvation -30.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds