Wall clock time and date at job start Mon Mar 30 2020 00:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99681 * 2 1 4 4 H 1.09000 * 109.46839 * 246.49514 * 3 2 1 5 5 C 1.50700 * 109.47213 * 126.49852 * 3 2 1 6 6 O 1.20831 * 119.99937 * 231.33436 * 5 3 2 7 7 O 1.34225 * 120.00022 * 51.33056 * 5 3 2 8 8 N 1.46892 * 109.47356 * 6.49306 * 3 2 1 9 9 C 1.46903 * 111.00423 * 190.40679 * 8 3 2 10 10 C 1.53232 * 109.34559 * 172.74809 * 9 8 3 11 11 H 1.08999 * 109.62831 * 294.12127 * 10 9 8 12 12 C 1.52992 * 109.63206 * 173.53816 * 10 9 8 13 13 N 1.47085 * 108.51904 * 53.82829 * 10 9 8 14 14 C 1.36942 * 120.87908 * 128.80059 * 13 10 9 15 15 H 1.07995 * 119.99502 * 330.52494 * 14 13 10 16 16 C 1.38811 * 119.99762 * 150.53723 * 14 13 10 17 17 N 1.31615 * 120.00357 * 345.37993 * 16 14 13 18 18 Si 1.86799 * 119.99788 * 165.38806 * 16 14 13 19 19 H 1.48497 * 109.47586 * 89.99354 * 18 16 14 20 20 H 1.48500 * 109.47053 * 209.99656 * 18 16 14 21 21 H 1.48509 * 109.47247 * 329.99561 * 18 16 14 22 22 C 1.47076 * 118.23918 * 308.81653 * 13 10 9 23 23 H 1.09004 * 109.63196 * 170.89848 * 22 13 10 24 24 C 1.53003 * 109.62689 * 291.47716 * 22 13 10 25 25 C 1.46901 * 110.99964 * 66.10279 * 8 3 2 26 26 H 1.07994 * 119.99968 * 5.39885 * 1 2 3 27 27 H 1.07995 * 119.99975 * 185.39541 * 1 2 3 28 28 H 1.07995 * 120.00519 * 180.27353 * 2 1 3 29 29 H 0.96706 * 116.99593 * 180.02562 * 7 5 3 30 30 H 1.09007 * 109.49081 * 292.71143 * 9 8 3 31 31 H 1.08998 * 109.48991 * 52.78263 * 9 8 3 32 32 H 1.09002 * 109.47276 * 303.06930 * 12 10 9 33 33 H 1.09004 * 109.47487 * 63.07007 * 12 10 9 34 34 H 1.08999 * 109.47617 * 183.07265 * 12 10 9 35 35 H 0.97004 * 120.00313 * 185.02657 * 17 16 14 36 36 H 1.09004 * 109.47162 * 179.03197 * 24 22 13 37 37 H 1.08999 * 109.47278 * 299.02363 * 24 22 13 38 38 H 1.08994 * 109.47493 * 59.03089 * 24 22 13 39 39 H 1.08995 * 109.49542 * 307.21540 * 25 8 3 40 40 H 1.09000 * 109.49365 * 67.29427 * 25 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 2.6001 1.4149 -0.9424 5 6 3.0465 1.3177 1.1421 6 8 3.0677 2.2498 1.9108 7 8 3.8985 0.2935 1.3056 8 7 1.1166 2.4172 0.1566 9 6 1.7756 3.7078 -0.0842 10 6 0.7234 4.8217 -0.0905 11 1 0.0566 4.6907 -0.9427 12 6 1.4163 6.1828 -0.1796 13 7 -0.0493 4.7415 1.1585 14 6 -0.2262 5.8465 1.9477 15 1 0.5239 6.6233 1.9650 16 6 -1.3694 5.9680 2.7256 17 7 -2.4048 5.1873 2.5003 18 14 -1.4384 7.2397 4.0922 19 1 -1.9699 8.5173 3.5532 20 1 -2.3273 6.7524 5.1773 21 1 -0.0728 7.4604 4.6325 22 6 -0.6266 3.4429 1.5374 23 1 -1.0255 3.5010 2.5501 24 6 -1.7448 3.0730 0.5608 25 6 0.4788 2.3832 1.4795 26 1 -0.5400 0.9311 -0.0880 27 1 -0.5400 -0.9311 0.0879 28 1 1.8501 -0.9352 -0.0045 29 1 4.5102 0.3463 2.0528 30 1 2.5022 3.8982 0.7057 31 1 2.2841 3.6823 -1.0480 32 1 2.1157 6.2895 0.6496 33 1 1.9578 6.2539 -1.1230 34 1 0.6693 6.9750 -0.1289 35 1 -3.2291 5.3202 2.9941 36 1 -2.1592 2.1025 0.8337 37 1 -2.5296 3.8282 0.6040 38 1 -1.3423 3.0247 -0.4510 39 1 0.0467 1.3972 1.6498 40 1 1.2233 2.5921 2.2477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602804607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:42 Heat of formation + Delta-G solvation = -16.539710 kcal Electronic energy + Delta-G solvation = -22570.684676 eV Core-core repulsion = 19387.837869 eV Total energy + Delta-G solvation = -3182.846806 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67720 -38.32647 -36.02521 -35.52050 -32.89154 -32.03369 -31.01542 -28.21713 -27.06610 -25.93751 -24.27084 -22.74553 -21.57892 -20.65090 -19.34427 -18.58840 -17.80599 -16.96025 -16.04691 -15.74179 -14.99201 -14.85260 -14.50534 -13.92085 -13.67395 -13.51245 -13.08919 -13.05990 -12.29161 -12.22040 -11.83435 -11.61416 -11.35889 -11.24694 -11.13235 -10.85245 -10.79499 -10.71848 -10.48282 -10.45630 -10.33654 -9.97523 -9.74130 -9.46928 -9.16542 -8.95219 -8.40619 -7.82358 -6.47957 -5.69463 -3.10829 2.17223 2.53602 3.29497 3.41514 3.48825 3.51365 4.21399 4.55386 4.91932 5.26500 5.37157 5.41381 5.48223 5.56654 5.85233 5.96151 6.06648 6.16594 6.23617 6.35369 6.39601 6.48592 6.51542 6.67684 6.73838 6.83892 6.89229 6.92359 7.03957 7.08033 7.12398 7.32955 7.46175 7.50971 7.79897 7.89255 8.01121 8.08277 8.57029 9.33208 9.94715 10.54011 11.39236 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.006874 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.607850 B = 4072.497300 C = 4297.150791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.172 4.172 3 C 0.121 3.879 4 H 0.119 0.881 5 C 0.448 3.552 6 O -0.497 6.497 7 O -0.524 6.524 8 N -0.493 5.493 9 C 0.033 3.967 10 C 0.175 3.825 11 H 0.032 0.968 12 C -0.137 4.137 13 N -0.582 5.582 14 C -0.245 4.245 15 H 0.067 0.933 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.898 3.102 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.203 3.797 23 H 0.092 0.908 24 C -0.140 4.140 25 C 0.009 3.991 26 H 0.132 0.868 27 H 0.094 0.906 28 H 0.116 0.884 29 H 0.399 0.601 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.065 0.935 35 H 0.252 0.748 36 H 0.021 0.979 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -9.665 -5.489 13.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.010 3.990 4 H 0.137 0.863 5 C 0.288 3.712 6 O -0.383 6.383 7 O -0.334 6.334 8 N -0.216 5.216 9 C -0.096 4.096 10 C 0.068 3.932 11 H 0.050 0.950 12 C -0.195 4.195 13 N -0.305 5.305 14 C -0.375 4.375 15 H 0.085 0.915 16 C -0.195 4.195 17 N -0.547 5.547 18 Si 0.729 3.271 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.097 3.903 23 H 0.110 0.890 24 C -0.198 4.198 25 C -0.120 4.120 26 H 0.150 0.850 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.257 0.743 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.095 0.905 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.596 -9.483 -5.805 13.466 hybrid contribution 0.992 0.659 1.832 2.185 sum 8.588 -8.824 -3.973 12.938 Atomic orbital electron populations 1.24399 0.96344 1.03382 0.95484 1.22494 0.96166 0.95334 1.05048 1.20739 0.89935 0.93949 0.94424 0.86341 1.25442 0.79834 0.78986 0.86951 1.90734 1.67743 1.35145 1.44714 1.84618 1.47877 1.47875 1.53074 1.62520 1.25880 1.01622 1.31617 1.22926 0.97734 0.89381 0.99556 1.20414 0.91094 0.91288 0.90411 0.95018 1.21797 1.00272 0.98203 0.99260 1.44204 1.60369 1.05699 1.20209 1.19148 1.01171 0.99258 1.17877 0.91534 1.25060 0.95310 0.98444 1.00652 1.69918 1.01868 1.40073 1.42829 0.86348 0.77320 0.81165 0.82282 1.21596 1.21743 1.20712 1.20329 0.88742 0.81893 0.99384 0.89028 1.22061 1.00409 0.99093 0.98278 1.23474 0.99165 1.00895 0.88417 0.85037 0.88734 0.86645 0.74261 0.92730 0.92493 0.93060 0.94339 0.91608 0.93798 0.96046 0.90484 0.94849 0.91660 0.92279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 12.13 29.01 0.35 -1.79 16 2 C -0.17 -2.23 8.98 -36.03 -0.32 -2.55 16 3 C 0.12 1.76 2.78 -70.02 -0.19 1.56 16 4 H 0.12 1.49 7.96 -51.93 -0.41 1.08 16 5 C 0.45 6.79 7.09 36.01 0.26 7.04 16 6 O -0.50 -9.42 12.50 -18.75 -0.23 -9.65 16 7 O -0.52 -6.09 13.17 -39.24 -0.52 -6.61 16 8 N -0.49 -8.71 3.12 -229.13 -0.71 -9.42 16 9 C 0.03 0.62 4.57 -3.70 -0.02 0.60 16 10 C 0.17 3.71 3.25 -67.50 -0.22 3.49 16 11 H 0.03 0.71 7.60 -51.93 -0.39 0.31 16 12 C -0.14 -2.65 7.96 37.15 0.30 -2.35 16 13 N -0.58 -14.40 2.72 -157.01 -0.43 -14.83 16 14 C -0.24 -6.63 8.61 -15.06 -0.13 -6.76 16 15 H 0.07 1.79 6.28 -52.49 -0.33 1.46 16 16 C 0.00 0.09 4.97 -17.43 -0.09 0.01 16 17 N -0.90 -25.42 9.71 55.49 0.54 -24.88 16 18 Si 0.90 21.91 29.58 -169.99 -5.03 16.89 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 22 C 0.20 4.80 2.34 -67.49 -0.16 4.64 16 23 H 0.09 2.49 6.27 -51.93 -0.33 2.16 16 24 C -0.14 -3.11 7.90 37.16 0.29 -2.81 16 25 C 0.01 0.17 3.63 -3.70 -0.01 0.16 16 26 H 0.13 2.10 4.19 -52.49 -0.22 1.88 16 27 H 0.09 1.07 8.06 -52.49 -0.42 0.64 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.40 3.13 9.10 45.56 0.41 3.54 16 30 H 0.05 1.13 6.12 -51.93 -0.32 0.82 16 31 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 32 H 0.05 1.02 7.69 -51.93 -0.40 0.62 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.35 7.42 -51.93 -0.39 0.97 16 35 H 0.25 6.96 8.32 -40.82 -0.34 6.62 16 36 H 0.02 0.42 7.78 -51.93 -0.40 0.02 16 37 H 0.08 1.96 6.74 -51.93 -0.35 1.61 16 38 H 0.03 0.71 6.89 -51.93 -0.36 0.35 16 39 H 0.07 1.23 5.38 -51.93 -0.28 0.95 16 40 H 0.06 1.35 5.42 -51.93 -0.28 1.07 16 LS Contribution 301.75 15.07 4.55 4.55 Total: -1.00 -30.32 301.75 -6.64 -36.96 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -4.86 Total: 5.77 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 0.05 Total: 1.22 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.60 Total: -49.13 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.75 Total: -16.26 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.32 -6.64 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602804607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.424 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds