Wall clock time and date at job start Mon Mar 30 2020 00:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99681 * 2 1 4 4 H 1.09000 * 109.46839 * 246.49514 * 3 2 1 5 5 C 1.50700 * 109.47213 * 126.49852 * 3 2 1 6 6 O 1.20831 * 119.99937 * 231.33436 * 5 3 2 7 7 O 1.34225 * 120.00022 * 51.33056 * 5 3 2 8 8 N 1.46892 * 109.47356 * 6.49306 * 3 2 1 9 9 C 1.46903 * 111.00423 * 190.40679 * 8 3 2 10 10 C 1.53232 * 109.34559 * 172.74809 * 9 8 3 11 11 H 1.08999 * 109.62831 * 294.12127 * 10 9 8 12 12 C 1.52992 * 109.63206 * 173.53816 * 10 9 8 13 13 N 1.47085 * 108.51904 * 53.82829 * 10 9 8 14 14 C 1.36942 * 120.87908 * 128.80059 * 13 10 9 15 15 H 1.07995 * 119.99502 * 330.52494 * 14 13 10 16 16 C 1.38811 * 119.99762 * 150.53723 * 14 13 10 17 17 N 1.31615 * 120.00357 * 345.37993 * 16 14 13 18 18 Si 1.86799 * 119.99788 * 165.38806 * 16 14 13 19 19 H 1.48497 * 109.47586 * 89.99354 * 18 16 14 20 20 H 1.48500 * 109.47053 * 209.99656 * 18 16 14 21 21 H 1.48509 * 109.47247 * 329.99561 * 18 16 14 22 22 C 1.47076 * 118.23918 * 308.81653 * 13 10 9 23 23 H 1.09004 * 109.63196 * 170.89848 * 22 13 10 24 24 C 1.53003 * 109.62689 * 291.47716 * 22 13 10 25 25 C 1.46901 * 110.99964 * 66.10279 * 8 3 2 26 26 H 1.07994 * 119.99968 * 5.39885 * 1 2 3 27 27 H 1.07995 * 119.99975 * 185.39541 * 1 2 3 28 28 H 1.07995 * 120.00519 * 180.27353 * 2 1 3 29 29 H 0.96706 * 116.99593 * 180.02562 * 7 5 3 30 30 H 1.09007 * 109.49081 * 292.71143 * 9 8 3 31 31 H 1.08998 * 109.48991 * 52.78263 * 9 8 3 32 32 H 1.09002 * 109.47276 * 303.06930 * 12 10 9 33 33 H 1.09004 * 109.47487 * 63.07007 * 12 10 9 34 34 H 1.08999 * 109.47617 * 183.07265 * 12 10 9 35 35 H 0.97004 * 120.00313 * 185.02657 * 17 16 14 36 36 H 1.09004 * 109.47162 * 179.03197 * 24 22 13 37 37 H 1.08999 * 109.47278 * 299.02363 * 24 22 13 38 38 H 1.08994 * 109.47493 * 59.03089 * 24 22 13 39 39 H 1.08995 * 109.49542 * 307.21540 * 25 8 3 40 40 H 1.09000 * 109.49365 * 67.29427 * 25 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 2.6001 1.4149 -0.9424 5 6 3.0465 1.3177 1.1421 6 8 3.0677 2.2498 1.9108 7 8 3.8985 0.2935 1.3056 8 7 1.1166 2.4172 0.1566 9 6 1.7756 3.7078 -0.0842 10 6 0.7234 4.8217 -0.0905 11 1 0.0566 4.6907 -0.9427 12 6 1.4163 6.1828 -0.1796 13 7 -0.0493 4.7415 1.1585 14 6 -0.2262 5.8465 1.9477 15 1 0.5239 6.6233 1.9650 16 6 -1.3694 5.9680 2.7256 17 7 -2.4048 5.1873 2.5003 18 14 -1.4384 7.2397 4.0922 19 1 -1.9699 8.5173 3.5532 20 1 -2.3273 6.7524 5.1773 21 1 -0.0728 7.4604 4.6325 22 6 -0.6266 3.4429 1.5374 23 1 -1.0255 3.5010 2.5501 24 6 -1.7448 3.0730 0.5608 25 6 0.4788 2.3832 1.4795 26 1 -0.5400 0.9311 -0.0880 27 1 -0.5400 -0.9311 0.0879 28 1 1.8501 -0.9352 -0.0045 29 1 4.5102 0.3463 2.0528 30 1 2.5022 3.8982 0.7057 31 1 2.2841 3.6823 -1.0480 32 1 2.1157 6.2895 0.6496 33 1 1.9578 6.2539 -1.1230 34 1 0.6693 6.9750 -0.1289 35 1 -3.2291 5.3202 2.9941 36 1 -2.1592 2.1025 0.8337 37 1 -2.5296 3.8282 0.6040 38 1 -1.3423 3.0247 -0.4510 39 1 0.0467 1.3972 1.6498 40 1 1.2233 2.5921 2.2477 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602804607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:41 Heat of formation + Delta-G solvation = -37.217300 kcal Electronic energy + Delta-G solvation = -22571.581323 eV Core-core repulsion = 19387.837869 eV Total energy + Delta-G solvation = -3183.743454 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.93737 -39.78138 -37.32945 -36.84935 -34.58277 -33.63963 -32.68841 -29.89086 -28.53972 -27.53118 -26.11994 -24.36028 -22.87061 -22.23504 -20.51867 -20.32696 -18.94461 -18.40290 -17.51218 -17.32772 -16.64165 -16.26063 -16.01495 -15.64869 -15.19731 -15.12055 -14.57702 -14.47145 -13.73866 -13.61569 -13.51006 -13.15160 -12.87959 -12.81333 -12.69813 -12.60378 -12.42279 -12.26339 -12.17662 -12.04682 -11.88592 -11.80974 -11.48425 -11.19266 -10.93590 -10.44483 -10.07160 -9.30652 -8.43773 -7.77490 -5.19577 1.06853 1.44504 1.46620 1.47159 1.54952 2.26528 2.53843 2.83473 3.37196 3.64217 3.84062 4.13241 4.27343 4.33644 4.39526 4.59374 4.61134 4.62949 4.74413 4.80357 4.90332 4.91571 5.00985 5.11272 5.13861 5.28178 5.34942 5.44158 5.55116 5.68895 5.72445 5.77393 5.79389 5.81647 6.09742 6.12292 6.22440 6.53143 7.00844 7.27987 7.98383 8.52006 9.28954 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.006874 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.607850 B = 4072.497300 C = 4297.150791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.164 4.164 3 C 0.115 3.885 4 H 0.148 0.852 5 C 0.455 3.545 6 O -0.541 6.541 7 O -0.508 6.508 8 N -0.493 5.493 9 C 0.043 3.957 10 C 0.167 3.833 11 H 0.025 0.975 12 C -0.128 4.128 13 N -0.599 5.599 14 C -0.251 4.251 15 H 0.064 0.936 16 C -0.047 4.047 17 N -0.922 5.922 18 Si 0.955 3.045 19 H -0.285 1.285 20 H -0.295 1.295 21 H -0.280 1.280 22 C 0.201 3.799 23 H 0.048 0.952 24 C -0.118 4.118 25 C 0.030 3.970 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.143 0.857 29 H 0.419 0.581 30 H 0.034 0.966 31 H 0.092 0.908 32 H 0.039 0.961 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.246 0.754 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.041 0.959 39 H 0.079 0.921 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.043 -11.290 -6.776 16.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.182 4.182 3 C 0.005 3.995 4 H 0.165 0.835 5 C 0.297 3.703 6 O -0.431 6.431 7 O -0.320 6.320 8 N -0.216 5.216 9 C -0.086 4.086 10 C 0.061 3.939 11 H 0.043 0.957 12 C -0.186 4.186 13 N -0.322 5.322 14 C -0.382 4.382 15 H 0.081 0.919 16 C -0.242 4.242 17 N -0.568 5.568 18 Si 0.785 3.215 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.206 1.206 22 C 0.094 3.906 23 H 0.066 0.934 24 C -0.177 4.177 25 C -0.098 4.098 26 H 0.123 0.877 27 H 0.136 0.864 28 H 0.161 0.839 29 H 0.280 0.720 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 9.307 -11.138 -7.111 16.163 hybrid contribution 0.570 1.086 2.188 2.508 sum 9.878 -10.052 -4.923 14.928 Atomic orbital electron populations 1.24391 0.96667 1.03336 0.96188 1.22630 0.95957 0.95337 1.04264 1.20907 0.89804 0.93379 0.95447 0.83465 1.25344 0.79894 0.78727 0.86293 1.90750 1.69109 1.36973 1.46270 1.84540 1.47540 1.46003 1.53938 1.62415 1.27277 1.02286 1.29583 1.22750 0.96236 0.88979 1.00628 1.20624 0.91369 0.93491 0.88434 0.95749 1.21700 0.99545 0.96500 1.00871 1.44428 1.60881 1.05457 1.21466 1.19379 1.00841 0.99769 1.18162 0.91881 1.25683 0.95353 1.00522 1.02654 1.70084 1.01940 1.41275 1.43545 0.85454 0.76936 0.79304 0.79818 1.21200 1.22203 1.20606 1.20205 0.90245 0.82860 0.97277 0.93392 1.21794 0.98844 0.98673 0.98409 1.23042 0.97419 1.00069 0.89317 0.87658 0.86422 0.83895 0.71976 0.94800 0.88954 0.94167 0.90469 0.93611 0.94494 0.94282 0.94134 0.93987 0.90245 0.94931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 12.13 67.78 0.82 -3.23 16 2 C -0.16 -3.61 8.98 25.65 0.23 -3.38 16 3 C 0.12 2.97 2.78 43.43 0.12 3.09 16 4 H 0.15 3.01 7.96 -2.39 -0.02 2.99 16 5 C 0.46 12.62 7.09 71.24 0.51 13.13 16 6 O -0.54 -19.99 12.50 21.95 0.27 -19.72 16 7 O -0.51 -9.98 13.17 -51.37 -0.68 -10.65 16 8 N -0.49 -16.53 3.12 -878.85 -2.74 -19.27 16 9 C 0.04 1.53 4.57 86.38 0.39 1.93 16 10 C 0.17 7.00 3.25 44.95 0.15 7.14 16 11 H 0.02 1.08 7.60 -2.39 -0.02 1.06 16 12 C -0.13 -4.86 7.96 71.98 0.57 -4.29 16 13 N -0.60 -30.31 2.72 -650.66 -1.77 -32.08 16 14 C -0.25 -13.99 8.61 84.03 0.72 -13.27 16 15 H 0.06 3.48 6.28 -2.91 -0.02 3.46 16 16 C -0.05 -2.64 4.97 84.86 0.42 -2.22 16 17 N -0.92 -53.95 9.71 21.65 0.21 -53.74 16 18 Si 0.96 46.36 29.58 68.60 2.03 48.39 16 19 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 20 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 21 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 22 C 0.20 9.72 2.34 44.96 0.11 9.82 16 23 H 0.05 2.73 6.27 -2.38 -0.01 2.71 16 24 C -0.12 -5.35 7.90 71.98 0.57 -4.78 16 25 C 0.03 1.21 3.63 86.38 0.31 1.53 16 26 H 0.11 3.15 4.19 -2.91 -0.01 3.14 16 27 H 0.12 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.42 5.17 9.10 -74.05 -0.67 4.49 16 30 H 0.03 1.37 6.12 -2.38 -0.01 1.36 16 31 H 0.09 2.63 7.98 -2.39 -0.02 2.61 16 32 H 0.04 1.58 7.69 -2.39 -0.02 1.57 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.04 1.89 7.42 -2.39 -0.02 1.87 16 35 H 0.25 14.10 8.32 -92.71 -0.77 13.33 16 36 H 0.04 1.57 7.78 -2.39 -0.02 1.55 16 37 H 0.04 2.12 6.74 -2.39 -0.02 2.10 16 38 H 0.04 1.78 6.89 -2.39 -0.02 1.76 16 39 H 0.08 2.93 5.38 -2.39 -0.01 2.92 16 40 H 0.03 1.51 5.42 -2.39 -0.01 1.50 16 Total: -1.00 -68.15 301.75 2.63 -65.52 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.38 Total: 16.06 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 4.92 Total: 5.47 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -4.30 Total: -105.08 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -0.40 Total: -30.37 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -68.15 2.63 -65.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602804607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.303 kcal (2) G-P(sol) polarization free energy of solvation -68.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds