Wall clock time and date at job start Mon Mar 30 2020 00:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.46889 * 2 1 4 4 C 1.42905 * 113.99778 * 179.97438 * 3 2 1 5 5 H 1.08995 * 115.55057 * 4.42241 * 4 3 2 6 6 C 1.53002 * 117.49794 * 218.74595 * 4 3 2 7 7 C 1.53003 * 117.49581 * 150.08980 * 4 3 2 8 8 H 1.08995 * 117.49293 * 214.98133 * 7 4 3 9 9 C 1.50699 * 117.49842 * 359.97438 * 7 4 3 10 10 O 1.21281 * 120.00353 * 0.02562 * 9 7 4 11 11 N 1.34785 * 119.99816 * 179.97438 * 9 7 4 12 12 C 1.46498 * 119.99845 * 180.02562 * 11 9 7 13 13 H 1.08995 * 112.85095 * 23.80044 * 12 11 9 14 14 C 1.53780 * 113.61482 * 155.00569 * 12 11 9 15 15 C 1.53774 * 87.08064 * 139.97747 * 14 12 11 16 16 H 1.09008 * 113.61104 * 219.93190 * 15 14 12 17 17 N 1.46498 * 113.61557 * 89.11945 * 15 14 12 18 18 C 1.36940 * 120.00313 * 155.00081 * 17 15 14 19 19 H 1.08004 * 119.99627 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00272 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00445 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99894 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.47194 * 89.99801 * 22 20 18 24 24 H 1.48496 * 109.47261 * 209.99951 * 22 20 18 25 25 H 1.48498 * 109.46822 * 329.99869 * 22 20 18 26 26 C 1.53777 * 87.08463 * 334.56585 * 15 14 12 27 27 H 1.08997 * 109.47286 * 300.00017 * 1 2 3 28 28 H 1.09008 * 109.47201 * 60.00236 * 1 2 3 29 29 H 1.09001 * 109.47296 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47286 * 239.99983 * 2 1 3 31 31 H 1.08997 * 109.46848 * 120.00081 * 2 1 3 32 32 H 1.08994 * 117.49712 * 0.02562 * 6 4 3 33 33 H 1.09001 * 117.49491 * 145.02025 * 6 4 3 34 34 H 0.96997 * 119.99348 * 0.02562 * 11 9 7 35 35 H 1.08999 * 113.61212 * 254.52644 * 14 12 11 36 36 H 1.08998 * 113.61461 * 25.34339 * 14 12 11 37 37 H 0.97004 * 119.99822 * 334.99095 * 17 15 14 38 38 H 0.96992 * 120.00023 * 180.02562 * 21 20 18 39 39 H 1.09006 * 113.61491 * 270.88787 * 26 15 14 40 40 H 1.08997 * 113.61654 * 139.98476 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9769 0.5199 -0.0749 6 6 4.0511 2.5712 0.8501 7 6 4.0424 2.6886 -0.6761 8 1 4.9910 2.5564 -1.1963 9 6 3.0964 3.6865 -1.2927 10 8 1.8992 3.4998 -1.2404 11 7 3.5808 4.7872 -1.9013 12 6 2.6612 5.7577 -2.5002 13 1 1.6648 5.7244 -2.0596 14 6 3.2434 7.1775 -2.6005 15 6 2.5736 7.2698 -3.9817 16 1 3.1866 7.7698 -4.7316 17 7 1.2015 7.7810 -3.9355 18 6 0.6618 8.3940 -5.0347 19 1 1.2479 8.5009 -5.9355 20 6 -0.6385 8.8779 -4.9911 21 7 -1.1571 9.4675 -6.0474 22 14 -1.6524 8.6922 -3.4332 23 1 -1.4460 9.8784 -2.5640 24 1 -3.0902 8.5830 -3.7884 25 1 -1.2271 7.4677 -2.7088 26 6 2.6578 5.7353 -4.0379 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.3727 3.2158 1.4088 33 1 5.0055 2.3619 1.3333 34 1 4.5383 4.9367 -1.9428 35 1 2.8309 7.8712 -1.8680 36 1 4.3324 7.2011 -2.6394 37 1 0.6751 7.6851 -3.1263 38 1 -2.0655 9.8059 -6.0168 39 1 3.5867 5.3646 -4.4713 40 1 1.7726 5.2648 -4.4658 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019999607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:48 Heat of formation + Delta-G solvation = -15.217478 kcal Electronic energy + Delta-G solvation = -20353.511301 eV Core-core repulsion = 17170.721831 eV Total energy + Delta-G solvation = -3182.789470 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10112 -38.77587 -37.54948 -35.20869 -34.01969 -32.52017 -30.88246 -30.27469 -25.53589 -25.17733 -23.55240 -23.01239 -22.40546 -22.04677 -20.11625 -18.87374 -17.90172 -17.50657 -16.27347 -15.94234 -15.66327 -15.36830 -14.72692 -14.61333 -14.09487 -13.94920 -13.17861 -13.01352 -12.76128 -12.65592 -12.57077 -12.31622 -12.18111 -12.04785 -11.99838 -11.34632 -11.15959 -10.92568 -10.79157 -10.70075 -10.33628 -10.21853 -9.84493 -9.62090 -9.54022 -9.20949 -8.91276 -8.65588 -7.28207 -5.77198 -3.13622 2.61935 3.24491 3.36685 3.41223 3.46740 3.48963 3.69336 4.50150 4.57403 4.60745 4.72336 4.90974 4.91905 5.01070 5.06704 5.15432 5.18348 5.18833 5.26016 5.40210 5.45088 5.58065 5.70252 5.76886 5.78261 5.80559 6.04185 6.04802 6.15363 6.32014 6.56724 6.63229 6.74902 6.96420 7.12295 7.73966 7.99739 8.42247 8.49790 9.19806 9.92408 10.10976 11.40742 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.004158 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.999426 B = 6733.034677 C = 7598.125176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.323 6.323 4 C 0.050 3.950 5 H 0.116 0.884 6 C -0.162 4.162 7 C -0.196 4.196 8 H 0.126 0.874 9 C 0.534 3.466 10 O -0.513 6.513 11 N -0.719 5.719 12 C 0.124 3.876 13 H 0.108 0.892 14 C -0.165 4.165 15 C 0.177 3.823 16 H 0.077 0.923 17 N -0.730 5.730 18 C -0.248 4.248 19 H 0.093 0.907 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.881 3.119 23 H -0.283 1.283 24 H -0.289 1.289 25 H -0.275 1.275 26 C -0.182 4.182 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.395 0.605 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.363 0.637 38 H 0.260 0.740 39 H 0.072 0.928 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.087 -17.893 14.146 26.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.240 6.240 4 C -0.010 4.010 5 H 0.133 0.867 6 C -0.200 4.200 7 C -0.217 4.217 8 H 0.144 0.856 9 C 0.319 3.681 10 O -0.387 6.387 11 N -0.370 5.370 12 C 0.020 3.980 13 H 0.126 0.874 14 C -0.205 4.205 15 C 0.064 3.936 16 H 0.095 0.905 17 N -0.370 5.370 18 C -0.378 4.378 19 H 0.110 0.890 20 C -0.188 4.188 21 N -0.579 5.579 22 Si 0.710 3.290 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.201 1.201 26 C -0.224 4.224 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.965 -17.737 13.939 26.019 hybrid contribution -0.067 -0.266 0.961 1.000 sum 12.898 -18.003 14.900 26.692 Atomic orbital electron populations 1.21712 0.93518 1.01894 1.03676 1.22539 0.96005 0.83949 0.99579 1.88205 1.16886 1.25410 1.93520 1.22520 0.83786 0.92874 1.01785 0.86673 1.23421 1.02918 1.02631 0.91025 1.22812 1.01381 1.00441 0.97109 0.85647 1.19511 0.88651 0.81609 0.78317 1.90781 1.15443 1.75133 1.57321 1.46060 1.10001 1.22745 1.58174 1.22599 0.94338 0.87152 0.93908 0.87379 1.23906 1.00327 0.95624 1.00653 1.20861 0.86941 0.91580 0.94207 0.90536 1.42549 1.10469 1.69488 1.14491 1.19099 0.97011 1.29326 0.92360 0.88961 1.24657 0.96946 1.00214 0.96980 1.69695 1.15730 1.44038 1.28446 0.86602 0.80309 0.78036 0.84011 1.20952 1.21573 1.20065 1.24274 1.01705 1.01650 0.94812 0.91886 0.91407 0.91281 0.93455 0.93618 0.87643 0.87264 0.77129 0.91064 0.89910 0.80374 0.92974 0.90902 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.12 16 2 C 0.06 0.56 6.53 37.16 0.24 0.80 16 3 O -0.32 -4.39 8.48 -57.36 -0.49 -4.88 16 4 C 0.05 0.50 6.40 -26.73 -0.17 0.33 16 5 H 0.12 0.79 7.93 -51.93 -0.41 0.38 16 6 C -0.16 -1.43 10.19 -26.69 -0.27 -1.70 16 7 C -0.20 -2.00 6.19 -91.73 -0.57 -2.57 16 8 H 0.13 0.89 8.14 -51.93 -0.42 0.46 16 9 C 0.53 7.92 7.62 -10.98 -0.08 7.84 16 10 O -0.51 -10.12 14.52 -16.57 -0.24 -10.36 16 11 N -0.72 -9.49 5.35 -53.02 -0.28 -9.77 16 12 C 0.12 2.03 4.12 -67.12 -0.28 1.75 16 13 H 0.11 2.13 7.46 -51.93 -0.39 1.74 16 14 C -0.17 -2.51 7.58 -25.92 -0.20 -2.71 16 15 C 0.18 3.38 4.56 -67.12 -0.31 3.07 16 16 H 0.08 1.45 8.10 -51.92 -0.42 1.03 16 17 N -0.73 -17.60 5.11 -52.64 -0.27 -17.87 16 18 C -0.25 -7.09 10.45 -15.06 -0.16 -7.25 16 19 H 0.09 2.79 8.06 -52.48 -0.42 2.36 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 21 N -0.93 -29.58 13.97 55.49 0.78 -28.81 16 22 Si 0.88 22.74 27.73 -169.99 -4.71 18.03 16 23 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 H -0.27 -6.87 6.52 56.52 0.37 -6.50 16 26 C -0.18 -3.18 7.68 -25.92 -0.20 -3.38 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.40 3.81 8.73 -40.82 -0.36 3.46 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 37 H 0.36 8.76 5.76 -40.82 -0.24 8.53 16 38 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 335.02 15.07 5.05 5.05 Total: -1.00 -35.48 335.02 -8.35 -43.83 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.47 Total: 9.56 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -1.70 Total: -4.78 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 0.22 Total: -56.45 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.73 Total: -15.24 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.48 -8.35 -43.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019999607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.613 kcal (2) G-P(sol) polarization free energy of solvation -35.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds