Wall clock time and date at job start Mon Mar 30 2020 00:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46276 * 118.81172 * 2 1 4 4 C 1.52026 * 109.96676 * 162.92218 * 3 2 1 5 5 C 1.54304 * 110.65666 * 283.57450 * 4 3 2 6 6 C 1.54460 * 102.94744 * 206.99842 * 5 4 3 7 7 N 1.47512 * 107.26023 * 21.54873 * 6 5 4 8 8 C 1.46898 * 111.00115 * 123.21568 * 7 6 5 9 9 C 1.53006 * 109.47006 * 69.87519 * 8 7 6 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47999 * 108.60268 * 0.92767 * 7 6 5 19 19 O 1.42111 * 110.96726 * 46.85338 * 4 3 2 20 20 C 1.43092 * 113.29420 * 294.23306 * 19 4 3 21 21 C 1.33830 * 118.81621 * 180.02562 * 2 1 3 22 22 O 1.21283 * 118.61808 * 2.74185 * 21 2 1 23 23 H 1.08996 * 109.46802 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46742 * 299.99949 * 1 2 3 25 25 H 1.08996 * 109.47285 * 59.99955 * 1 2 3 26 26 H 1.09003 * 109.38644 * 42.76802 * 3 2 1 27 27 H 1.09005 * 109.38897 * 283.07939 * 3 2 1 28 28 H 1.08999 * 110.72258 * 88.63346 * 5 4 3 29 29 H 1.09005 * 110.72258 * 325.35774 * 5 4 3 30 30 H 1.09001 * 109.88965 * 262.13788 * 6 5 4 31 31 H 1.09005 * 109.88993 * 140.96002 * 6 5 4 32 32 H 1.09001 * 109.47062 * 309.87773 * 8 7 6 33 33 H 1.09001 * 109.47392 * 189.87221 * 8 7 6 34 34 H 1.08998 * 109.46509 * 60.00221 * 9 8 7 35 35 H 1.08993 * 109.46955 * 299.99780 * 9 8 7 36 36 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 37 37 H 1.08996 * 110.38756 * 95.56648 * 18 7 6 38 38 H 1.08999 * 110.38618 * 217.93573 * 18 7 6 39 39 H 1.08996 * 109.39454 * 168.22891 * 20 19 4 40 40 H 1.09005 * 109.39087 * 287.94312 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1700 1.2817 0.0000 4 6 3.6170 1.0783 0.4196 5 6 3.7174 0.8717 1.9455 6 6 5.1410 1.3756 2.2700 7 7 5.5484 2.2732 1.1726 8 6 5.9092 3.6016 1.6855 9 6 7.2187 3.5066 2.4711 10 6 7.5892 4.8695 2.9967 11 1 6.9539 5.7185 2.7913 12 6 8.7385 5.0324 3.7406 13 7 9.5118 3.9986 3.9911 14 14 9.1974 6.7217 4.3927 15 1 10.4685 6.6295 5.1551 16 1 8.1191 7.2174 5.2853 17 1 9.3697 7.6612 3.2557 18 6 4.4367 2.3642 0.1998 19 8 4.1986 -0.0169 -0.2745 20 6 3.6081 -1.2767 0.0598 21 6 2.1101 -1.1726 -0.0005 22 8 1.4584 -2.1941 -0.0519 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6830 1.9625 0.6982 27 1 2.1405 1.7109 -1.0016 28 1 3.6145 -0.1833 2.1994 29 1 2.9689 1.4695 2.4657 30 1 5.8278 0.5315 2.3328 31 1 5.1349 1.9222 3.2131 32 1 5.1178 3.9652 2.3410 33 1 6.0354 4.2913 0.8509 34 1 8.0100 3.1430 1.8155 35 1 7.0925 2.8170 3.3056 36 1 9.2734 3.1213 3.6527 37 1 3.8254 3.2435 0.4030 38 1 4.8248 2.3977 -0.8182 39 1 3.9468 -2.0341 -0.6470 40 1 3.9111 -1.5624 1.0672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:22 Heat of formation + Delta-G solvation = -65.825244 kcal Electronic energy + Delta-G solvation = -21206.436641 eV Core-core repulsion = 18021.452653 eV Total energy + Delta-G solvation = -3184.983987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.36544 -39.16936 -36.92864 -35.75194 -33.77108 -31.84561 -29.98452 -29.23254 -28.52285 -26.19814 -25.52862 -23.87655 -22.08311 -21.36201 -20.20290 -18.71003 -17.95161 -17.03675 -16.74656 -16.45585 -16.08668 -15.37713 -14.92708 -14.68389 -14.11484 -13.76768 -13.58721 -13.51184 -13.41230 -13.06258 -12.93950 -12.58439 -12.45826 -12.12859 -11.98008 -11.58182 -11.34357 -11.10649 -11.01284 -10.74467 -10.48094 -10.16003 -10.05950 -9.76201 -9.61332 -9.11604 -8.57950 -8.32370 -7.90402 -6.35982 -4.05259 2.19083 2.50096 3.32689 3.43066 3.45226 3.64033 3.87178 4.16567 4.31689 4.48751 4.52613 4.67250 4.83235 4.93822 4.98782 5.03559 5.14167 5.18077 5.26899 5.41134 5.42251 5.48480 5.51151 5.62016 5.75579 5.92323 5.97214 6.01690 6.20771 6.30280 6.68543 6.77132 7.00953 7.22936 7.26938 7.55311 7.67515 7.71036 8.22349 8.46220 8.88539 9.67436 11.05167 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.047968 B = 0.003644 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.584325 B = 7681.730166 C = 7919.271381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.098 3.902 4 C 0.091 3.909 5 C -0.169 4.169 6 C 0.051 3.949 7 N -0.524 5.524 8 C 0.064 3.936 9 C 0.016 3.984 10 C -0.605 4.605 11 H 0.047 0.953 12 C 0.016 3.984 13 N -0.912 5.912 14 Si 1.069 2.931 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.288 1.288 18 C 0.063 3.937 19 O -0.339 6.339 20 C 0.047 3.953 21 C 0.489 3.511 22 O -0.548 6.548 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.024 0.976 33 H 0.064 0.936 34 H 0.016 0.984 35 H 0.007 0.993 36 H 0.270 0.730 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 -6.524 -7.637 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.340 5.340 3 C -0.025 4.025 4 C 0.050 3.950 5 C -0.207 4.207 6 C -0.077 4.077 7 N -0.248 5.248 8 C -0.063 4.063 9 C -0.021 4.021 10 C -0.644 4.644 11 H 0.065 0.935 12 C -0.188 4.188 13 N -0.548 5.548 14 Si 0.897 3.103 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.214 1.214 18 C -0.065 4.065 19 O -0.256 6.256 20 C -0.033 4.033 21 C 0.278 3.722 22 O -0.426 6.426 23 H 0.109 0.891 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.025 0.975 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.110 0.890 39 H 0.150 0.850 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.652 -6.394 -7.154 18.359 hybrid contribution -2.180 -0.404 -0.291 2.236 sum -17.832 -6.798 -7.445 20.484 Atomic orbital electron populations 1.21773 0.79056 1.04619 1.01547 1.47394 1.07536 1.06066 1.73021 1.21962 0.92041 0.85351 1.03178 1.22258 0.91032 0.89610 0.92075 1.23405 0.99723 1.02650 0.94926 1.22787 0.92996 0.97373 0.94533 1.63749 1.34819 1.12888 1.13322 1.22410 0.99047 0.86932 0.97899 1.19191 0.91495 0.97267 0.94155 1.22002 1.10864 0.94262 1.37287 0.93477 1.25821 0.93197 1.04856 0.94935 1.70765 1.38927 1.00943 1.44116 0.83551 0.76261 0.74160 0.76328 1.20752 1.21546 1.21432 1.22870 0.91659 0.92468 0.99523 1.88114 1.59122 1.13366 1.65043 1.22837 0.87457 0.88451 1.04515 1.21089 0.91994 0.83275 0.75881 1.90715 1.67494 1.34084 1.50343 0.89072 0.91969 0.91966 0.89336 0.90227 0.90472 0.90276 0.90570 0.91806 0.95787 0.91788 0.96520 0.97505 0.91943 0.91999 0.89011 0.85014 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 10.59 59.85 0.63 1.23 16 2 N -0.61 -6.29 3.22 -182.80 -0.59 -6.88 16 3 C 0.10 0.90 5.41 -4.66 -0.03 0.88 16 4 C 0.09 1.06 0.83 -89.87 -0.07 0.98 16 5 C -0.17 -2.01 5.76 -25.28 -0.15 -2.16 16 6 C 0.05 0.80 6.22 -2.72 -0.02 0.78 16 7 N -0.52 -9.04 5.16 -231.51 -1.20 -10.23 16 8 C 0.06 1.30 4.47 -3.82 -0.02 1.28 16 9 C 0.02 0.42 4.31 -27.88 -0.12 0.30 16 10 C -0.61 -17.11 9.11 -34.44 -0.31 -17.43 16 11 H 0.05 1.30 7.74 -52.48 -0.41 0.89 16 12 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 13 N -0.91 -28.00 13.65 55.43 0.76 -27.25 16 14 Si 1.07 25.11 29.90 -169.99 -5.08 20.03 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.06 0.84 5.87 -2.66 -0.02 0.82 16 19 O -0.34 -4.34 10.44 -35.23 -0.37 -4.70 16 20 C 0.05 0.51 6.37 35.80 0.23 0.74 16 21 C 0.49 6.02 7.46 -11.61 -0.09 5.93 16 22 O -0.55 -8.28 16.10 5.55 0.09 -8.19 16 23 H 0.09 0.88 6.70 -51.93 -0.35 0.54 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.67 7.83 -51.93 -0.41 0.26 16 27 H 0.08 0.66 8.13 -51.93 -0.42 0.23 16 28 H 0.08 0.86 5.94 -51.93 -0.31 0.55 16 29 H 0.08 0.86 7.80 -51.93 -0.40 0.45 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 32 H 0.02 0.48 7.96 -51.93 -0.41 0.06 16 33 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 34 H 0.02 0.46 8.01 -51.93 -0.42 0.04 16 35 H 0.01 0.18 7.01 -51.93 -0.36 -0.19 16 36 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 37 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 0.94 6.59 -51.93 -0.34 0.60 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -33.40 315.96 -7.89 -41.29 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -6.21 Total: -2.55 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -0.05 Total: -6.28 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -1.03 Total: -44.36 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.28 Total: -12.89 kcal Atomic # 14 Polarization: 25.11 SS G_CDS: -5.08 Total: 20.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.40 -7.89 -41.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.536 kcal (2) G-P(sol) polarization free energy of solvation -33.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds