Wall clock time and date at job start Mon Mar 30 2020 00:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46276 * 118.81172 * 2 1 4 4 C 1.52026 * 109.96676 * 162.92218 * 3 2 1 5 5 C 1.54304 * 110.65666 * 283.57450 * 4 3 2 6 6 C 1.54460 * 102.94744 * 206.99842 * 5 4 3 7 7 N 1.47512 * 107.26023 * 21.54873 * 6 5 4 8 8 C 1.46898 * 111.00115 * 123.21568 * 7 6 5 9 9 C 1.53006 * 109.47006 * 69.87519 * 8 7 6 10 10 C 1.50698 * 109.47184 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.47999 * 108.60268 * 0.92767 * 7 6 5 19 19 O 1.42111 * 110.96726 * 46.85338 * 4 3 2 20 20 C 1.43092 * 113.29420 * 294.23306 * 19 4 3 21 21 C 1.33830 * 118.81621 * 180.02562 * 2 1 3 22 22 O 1.21283 * 118.61808 * 2.74185 * 21 2 1 23 23 H 1.08996 * 109.46802 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46742 * 299.99949 * 1 2 3 25 25 H 1.08996 * 109.47285 * 59.99955 * 1 2 3 26 26 H 1.09003 * 109.38644 * 42.76802 * 3 2 1 27 27 H 1.09005 * 109.38897 * 283.07939 * 3 2 1 28 28 H 1.08999 * 110.72258 * 88.63346 * 5 4 3 29 29 H 1.09005 * 110.72258 * 325.35774 * 5 4 3 30 30 H 1.09001 * 109.88965 * 262.13788 * 6 5 4 31 31 H 1.09005 * 109.88993 * 140.96002 * 6 5 4 32 32 H 1.09001 * 109.47062 * 309.87773 * 8 7 6 33 33 H 1.09001 * 109.47392 * 189.87221 * 8 7 6 34 34 H 1.08998 * 109.46509 * 60.00221 * 9 8 7 35 35 H 1.08993 * 109.46955 * 299.99780 * 9 8 7 36 36 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 37 37 H 1.08996 * 110.38756 * 95.56648 * 18 7 6 38 38 H 1.08999 * 110.38618 * 217.93573 * 18 7 6 39 39 H 1.08996 * 109.39454 * 168.22891 * 20 19 4 40 40 H 1.09005 * 109.39087 * 287.94312 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1700 1.2817 0.0000 4 6 3.6170 1.0783 0.4196 5 6 3.7174 0.8717 1.9455 6 6 5.1410 1.3756 2.2700 7 7 5.5484 2.2732 1.1726 8 6 5.9092 3.6016 1.6855 9 6 7.2187 3.5066 2.4711 10 6 7.5892 4.8695 2.9967 11 1 6.9539 5.7185 2.7913 12 6 8.7385 5.0324 3.7406 13 7 9.5118 3.9986 3.9911 14 14 9.1974 6.7217 4.3927 15 1 10.4685 6.6295 5.1551 16 1 8.1191 7.2174 5.2853 17 1 9.3697 7.6612 3.2557 18 6 4.4367 2.3642 0.1998 19 8 4.1986 -0.0169 -0.2745 20 6 3.6081 -1.2767 0.0598 21 6 2.1101 -1.1726 -0.0005 22 8 1.4584 -2.1941 -0.0519 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6830 1.9625 0.6982 27 1 2.1405 1.7109 -1.0016 28 1 3.6145 -0.1833 2.1994 29 1 2.9689 1.4695 2.4657 30 1 5.8278 0.5315 2.3328 31 1 5.1349 1.9222 3.2131 32 1 5.1178 3.9652 2.3410 33 1 6.0354 4.2913 0.8509 34 1 8.0100 3.1430 1.8155 35 1 7.0925 2.8170 3.3056 36 1 9.2734 3.1213 3.6527 37 1 3.8254 3.2435 0.4030 38 1 4.8248 2.3977 -0.8182 39 1 3.9468 -2.0341 -0.6470 40 1 3.9111 -1.5624 1.0672 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040744.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:21 Heat of formation + Delta-G solvation = -90.761235 kcal Electronic energy + Delta-G solvation = -21207.517946 eV Core-core repulsion = 18021.452653 eV Total energy + Delta-G solvation = -3186.065293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.28658 -40.22830 -38.12972 -36.59140 -35.73481 -33.32098 -31.06609 -30.46936 -29.70580 -27.24983 -26.50705 -25.58674 -23.69915 -22.35895 -21.64747 -19.64067 -18.97546 -18.79319 -17.93813 -17.37160 -16.96590 -16.62712 -15.91448 -15.85217 -15.62678 -15.15255 -15.01399 -14.69540 -14.50880 -14.26483 -13.99506 -13.78476 -13.55615 -13.32890 -13.08670 -12.99936 -12.71722 -12.49255 -12.24900 -12.12722 -11.96459 -11.79698 -11.65273 -11.39090 -10.72327 -10.52903 -10.50753 -9.90266 -9.24829 -8.67724 -6.38314 1.28658 1.54271 1.63092 1.72192 1.82047 2.43189 2.57806 2.89208 3.18039 3.18656 3.38448 3.50203 3.56164 4.04150 4.08578 4.17611 4.29024 4.31295 4.35317 4.41495 4.47868 4.50274 4.60110 4.62444 4.65225 4.71974 4.86610 4.87784 4.93018 5.04086 5.17967 5.27392 5.43550 5.79579 5.88657 6.07940 6.16474 6.17898 6.21911 6.58444 6.83612 7.45152 8.73310 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.047968 B = 0.003644 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.584325 B = 7681.730166 C = 7919.271381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.604 5.604 3 C 0.102 3.898 4 C 0.094 3.906 5 C -0.157 4.157 6 C 0.050 3.950 7 N -0.545 5.545 8 C 0.083 3.917 9 C 0.020 3.980 10 C -0.619 4.619 11 H 0.055 0.945 12 C -0.040 4.040 13 N -0.939 5.939 14 Si 1.119 2.881 15 H -0.286 1.286 16 H -0.267 1.267 17 H -0.267 1.267 18 C 0.062 3.938 19 O -0.357 6.357 20 C 0.047 3.953 21 C 0.485 3.515 22 O -0.584 6.584 23 H 0.072 0.928 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.031 0.969 33 H 0.067 0.933 34 H -0.015 1.015 35 H -0.013 1.013 36 H 0.254 0.746 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.143 0.857 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.105 -4.920 -8.075 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.337 5.337 3 C -0.021 4.021 4 C 0.053 3.947 5 C -0.196 4.196 6 C -0.078 4.078 7 N -0.269 5.269 8 C -0.045 4.045 9 C -0.017 4.017 10 C -0.658 4.658 11 H 0.073 0.927 12 C -0.237 4.237 13 N -0.576 5.576 14 Si 0.940 3.060 15 H -0.212 1.212 16 H -0.192 1.192 17 H -0.192 1.192 18 C -0.065 4.065 19 O -0.276 6.276 20 C -0.031 4.031 21 C 0.274 3.726 22 O -0.466 6.466 23 H 0.091 0.909 24 H 0.101 0.899 25 H 0.100 0.900 26 H 0.133 0.867 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.003 0.997 35 H 0.005 0.995 36 H 0.064 0.936 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.160 0.840 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.722 -4.778 -7.615 19.872 hybrid contribution -1.538 -0.942 -0.187 1.813 sum -19.260 -5.720 -7.803 21.553 Atomic orbital electron populations 1.21921 0.77682 1.04071 1.03538 1.47504 1.08516 1.05889 1.71763 1.22031 0.90110 0.85067 1.04879 1.22226 0.92345 0.88571 0.91512 1.23345 0.97358 1.03263 0.95601 1.22713 0.95332 0.96406 0.93373 1.63577 1.37782 1.11249 1.14289 1.22015 0.96345 0.88808 0.97318 1.19079 0.93535 0.95612 0.93517 1.22463 1.10948 0.95523 1.36837 0.92670 1.27478 0.93382 1.07869 0.94994 1.70909 1.40038 1.00946 1.45702 0.82920 0.76384 0.69986 0.76722 1.21156 1.19179 1.19249 1.22935 0.90984 0.94429 0.98171 1.88091 1.59880 1.14184 1.65418 1.22906 0.86941 0.88014 1.05283 1.21234 0.92275 0.83447 0.75654 1.90702 1.68156 1.35352 1.52351 0.90904 0.89889 0.90012 0.86687 0.88566 0.89733 0.88382 0.92121 0.93672 0.95098 0.91500 0.99688 0.99476 0.93647 0.89582 0.88960 0.83990 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 10.59 127.77 1.35 2.30 16 2 N -0.60 -10.82 3.22 -851.16 -2.74 -13.56 16 3 C 0.10 1.47 5.41 86.10 0.47 1.94 16 4 C 0.09 1.94 0.83 -10.31 -0.01 1.93 16 5 C -0.16 -3.43 5.76 31.53 0.18 -3.25 16 6 C 0.05 1.55 6.22 86.68 0.54 2.09 16 7 N -0.54 -18.52 5.16 -886.36 -4.58 -23.10 16 8 C 0.08 3.32 4.47 86.31 0.39 3.71 16 9 C 0.02 1.05 4.31 29.85 0.13 1.18 16 10 C -0.62 -35.21 9.11 25.60 0.23 -34.98 16 11 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 12 C -0.04 -2.33 5.46 84.65 0.46 -1.87 16 13 N -0.94 -59.10 13.65 21.45 0.29 -58.81 16 14 Si 1.12 49.78 29.90 68.60 2.05 51.83 16 15 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 17 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 18 C 0.06 1.51 5.87 86.46 0.51 2.01 16 19 O -0.36 -8.59 10.44 -148.98 -1.55 -10.15 16 20 C 0.05 0.98 6.37 71.10 0.45 1.44 16 21 C 0.49 11.19 7.46 87.67 0.65 11.84 16 22 O -0.58 -17.29 16.10 -3.04 -0.05 -17.34 16 23 H 0.07 1.31 6.70 -2.39 -0.02 1.29 16 24 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.12 1.13 7.83 -2.39 -0.02 1.12 16 27 H 0.10 1.16 8.13 -2.38 -0.02 1.14 16 28 H 0.08 1.74 5.94 -2.39 -0.01 1.73 16 29 H 0.10 1.80 7.80 -2.38 -0.02 1.78 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.04 1.56 6.91 -2.38 -0.02 1.54 16 32 H 0.03 1.19 7.96 -2.39 -0.02 1.17 16 33 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 34 H -0.02 -0.89 8.01 -2.39 -0.02 -0.91 16 35 H -0.01 -0.73 7.01 -2.39 -0.02 -0.74 16 36 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 37 H 0.09 1.70 7.67 -2.39 -0.02 1.68 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 40 H 0.10 1.92 6.59 -2.38 -0.02 1.91 16 Total: -1.00 -73.84 315.96 -0.10 -73.95 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.12 Total: 8.82 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: 5.36 Total: -11.64 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -7.03 Total: -95.47 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: -1.60 Total: -27.49 kcal Atomic # 14 Polarization: 49.78 SS G_CDS: 2.05 Total: 51.83 kcal Total: -73.84 -0.10 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040744.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.813 kcal (2) G-P(sol) polarization free energy of solvation -73.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds