Wall clock time and date at job start Mon Mar 30 2020 00:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46199 * 118.77100 * 2 1 4 4 C 1.52610 * 109.86066 * 162.30570 * 3 2 1 5 5 C 1.54114 * 110.04975 * 169.46692 * 4 3 2 6 6 C 1.55037 * 102.81106 * 97.78670 * 5 4 3 7 7 N 1.48579 * 103.29004 * 37.01673 * 6 5 4 8 8 C 1.46894 * 111.00392 * 200.56284 * 7 6 5 9 9 C 1.53007 * 109.46798 * 287.41532 * 8 7 6 10 10 C 1.50699 * 109.46765 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00676 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99726 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00125 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 120.00250 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46859 * 359.97438 * 14 12 10 16 16 H 1.48488 * 109.47328 * 119.99600 * 14 12 10 17 17 H 1.48500 * 109.47171 * 240.00167 * 14 12 10 18 18 C 1.48038 * 105.83309 * 321.08567 * 7 6 5 19 19 O 1.42576 * 109.96716 * 48.05675 * 4 3 2 20 20 C 1.43032 * 113.17930 * 293.10762 * 19 4 3 21 21 C 1.33838 * 118.77530 * 180.27421 * 2 1 3 22 22 O 1.21283 * 118.70037 * 2.39306 * 21 2 1 23 23 H 1.09001 * 109.47060 * 179.73355 * 1 2 3 24 24 H 1.09004 * 109.47073 * 299.72844 * 1 2 3 25 25 H 1.09000 * 109.47212 * 59.72927 * 1 2 3 26 26 H 1.09000 * 109.39018 * 282.61564 * 3 2 1 27 27 H 1.09000 * 109.38835 * 42.32352 * 3 2 1 28 28 H 1.09000 * 110.74530 * 216.11888 * 5 4 3 29 29 H 1.09000 * 110.74489 * 339.44831 * 5 4 3 30 30 H 1.09007 * 110.65192 * 278.57090 * 6 5 4 31 31 H 1.08996 * 110.65895 * 155.47310 * 6 5 4 32 32 H 1.09004 * 109.47131 * 47.40954 * 8 7 6 33 33 H 1.08997 * 109.47335 * 167.41609 * 8 7 6 34 34 H 1.09004 * 109.46808 * 299.99620 * 9 8 7 35 35 H 1.08997 * 109.47114 * 59.99942 * 9 8 7 36 36 H 0.97001 * 120.00459 * 180.02562 * 13 12 10 37 37 H 1.09005 * 109.97594 * 265.87155 * 18 7 6 38 38 H 1.08997 * 110.01406 * 144.60181 * 18 7 6 39 39 H 1.08996 * 109.40190 * 288.52300 * 20 19 4 40 40 H 1.09003 * 109.32465 * 168.74532 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1687 1.2815 0.0000 4 6 3.6169 1.0778 0.4363 5 6 4.4293 2.3637 0.1882 6 6 4.4319 3.0429 1.5819 7 7 4.5414 1.8963 2.5204 8 6 4.0798 2.2697 3.8640 9 6 5.1110 3.1904 4.5199 10 6 4.6377 3.5730 5.8985 11 1 3.6956 3.1975 6.2697 12 6 5.4071 4.4035 6.6857 13 7 6.5541 4.8612 6.2336 14 14 4.8209 4.8772 8.3949 15 1 3.5096 4.2346 8.6643 16 1 5.8122 4.4214 9.4022 17 1 4.6746 6.3527 8.4767 18 6 3.6964 0.8239 1.9482 19 8 4.1931 -0.0109 -0.2817 20 6 3.6080 -1.2742 0.0465 21 6 2.1093 -1.1731 -0.0056 22 8 1.4580 -2.1950 -0.0549 23 1 -0.3633 -1.0277 -0.0048 24 1 -0.3633 0.5096 0.8924 25 1 -0.3634 0.5180 -0.8875 26 1 2.1461 1.7068 -1.0034 27 1 1.6765 1.9646 0.6923 28 1 5.4450 2.1241 -0.1265 29 1 3.9350 2.9966 -0.5489 30 1 3.5017 3.5868 1.7463 31 1 5.2901 3.7070 1.6844 32 1 3.1246 2.7894 3.7887 33 1 3.9580 1.3714 4.4691 34 1 6.0662 2.6707 4.5952 35 1 5.2328 4.0888 3.9148 36 1 7.0956 5.4451 6.7874 37 1 2.6986 0.8628 2.3853 38 1 4.1487 -0.1493 2.1391 39 1 3.9165 -1.5663 1.0502 40 1 3.9453 -2.0246 -0.6686 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040745.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:42:24 Heat of formation + Delta-G solvation = -63.250000 kcal Electronic energy + Delta-G solvation = -21264.888187 eV Core-core repulsion = 18080.015871 eV Total energy + Delta-G solvation = -3184.872316 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30475 -39.05217 -36.93065 -35.66648 -33.56985 -31.99552 -29.36505 -29.30250 -28.65179 -26.40723 -25.55400 -24.16192 -21.92407 -21.22385 -20.05242 -18.72805 -17.86442 -16.96598 -16.57712 -16.17646 -15.99012 -15.31883 -14.81851 -14.54599 -14.33342 -14.17812 -13.82792 -13.41966 -13.25885 -12.92110 -12.43017 -12.39216 -12.28578 -12.11705 -11.91421 -11.64308 -11.34000 -11.08629 -10.90269 -10.85481 -10.60501 -10.46045 -9.90749 -9.60045 -9.43683 -9.16365 -9.05127 -8.37990 -7.98409 -6.03326 -4.06159 2.25798 2.57120 3.28491 3.36233 3.39652 3.40432 3.95106 4.20993 4.37130 4.42639 4.59949 4.66748 4.90224 5.00323 5.06152 5.15281 5.19062 5.29941 5.32891 5.36880 5.40286 5.55219 5.56944 5.71923 5.84910 5.94101 6.00244 6.12118 6.29211 6.31097 6.70775 6.86724 7.06063 7.24652 7.33384 7.69537 7.77500 7.83144 8.02471 8.38178 9.01177 9.57947 11.07987 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.031014 B = 0.004014 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.592660 B = 6974.687344 C = 7289.235629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.607 5.607 3 C 0.097 3.903 4 C 0.091 3.909 5 C -0.105 4.105 6 C 0.039 3.961 7 N -0.508 5.508 8 C 0.054 3.946 9 C 0.030 3.970 10 C -0.524 4.524 11 H 0.054 0.946 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.012 3.988 19 O -0.352 6.352 20 C 0.045 3.955 21 C 0.490 3.510 22 O -0.548 6.548 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.023 0.977 33 H 0.060 0.940 34 H 0.025 0.975 35 H 0.017 0.983 36 H 0.260 0.740 37 H 0.048 0.952 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.493 -6.612 -14.965 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.341 5.341 3 C -0.026 4.026 4 C 0.050 3.950 5 C -0.143 4.143 6 C -0.089 4.089 7 N -0.233 5.233 8 C -0.073 4.073 9 C -0.007 4.007 10 C -0.562 4.562 11 H 0.072 0.928 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.719 3.281 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.117 4.117 19 O -0.270 6.270 20 C -0.034 4.034 21 C 0.278 3.722 22 O -0.426 6.426 23 H 0.109 0.891 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.113 0.887 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.035 0.965 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.114 0.886 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.997 -7.183 -15.003 18.456 hybrid contribution -1.400 0.633 1.195 1.946 sum -9.397 -6.549 -13.808 17.940 Atomic orbital electron populations 1.21786 0.79078 1.04629 1.01580 1.47388 1.07593 1.06115 1.72965 1.22232 0.92239 0.85308 1.02847 1.22432 0.91378 0.89184 0.91973 1.22513 1.01453 0.92211 0.98145 1.23290 1.01876 0.94014 0.89735 1.64949 1.49218 1.06073 1.03062 1.22561 0.98115 0.99681 0.86973 1.19037 0.93938 0.93465 0.94255 1.21215 1.05615 1.29198 1.00218 0.92810 1.24983 0.94901 0.96059 0.98264 1.69976 1.12235 1.33792 1.37097 0.86551 0.78788 0.78202 0.84543 1.19810 1.20933 1.21006 1.23458 0.97148 0.98728 0.92331 1.88153 1.60248 1.13978 1.64656 1.22836 0.87654 0.88176 1.04698 1.21061 0.91976 0.83274 0.75884 1.90713 1.67511 1.33994 1.50387 0.89055 0.91885 0.92018 0.90287 0.89398 0.88660 0.90101 0.93612 0.88722 0.95827 0.92101 0.95618 0.96484 0.92999 0.93350 0.89827 0.88609 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.58 59.85 0.63 1.30 16 2 N -0.61 -6.82 3.20 -182.49 -0.58 -7.40 16 3 C 0.10 0.97 5.14 -4.40 -0.02 0.95 16 4 C 0.09 1.07 0.96 -89.97 -0.09 0.99 16 5 C -0.10 -1.20 6.34 -25.07 -0.16 -1.36 16 6 C 0.04 0.57 5.91 -1.82 -0.01 0.55 16 7 N -0.51 -8.74 5.25 -230.53 -1.21 -9.95 16 8 C 0.05 1.09 4.65 -3.82 -0.02 1.07 16 9 C 0.03 0.77 5.06 -27.88 -0.14 0.63 16 10 C -0.52 -14.57 9.11 -34.44 -0.31 -14.89 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 14 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 18 C 0.01 0.17 5.42 -2.93 -0.02 0.15 16 19 O -0.35 -4.31 10.35 -35.23 -0.36 -4.68 16 20 C 0.05 0.50 6.42 35.81 0.23 0.73 16 21 C 0.49 6.31 7.43 -11.60 -0.09 6.22 16 22 O -0.55 -8.59 16.11 5.56 0.09 -8.50 16 23 H 0.09 0.97 6.70 -51.93 -0.35 0.62 16 24 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.68 7.94 -51.93 -0.41 0.26 16 27 H 0.09 0.82 7.97 -51.93 -0.41 0.41 16 28 H 0.09 1.14 8.07 -51.93 -0.42 0.72 16 29 H 0.08 0.71 7.69 -51.93 -0.40 0.31 16 30 H 0.05 0.64 7.81 -51.93 -0.41 0.24 16 31 H 0.09 1.49 7.81 -51.93 -0.41 1.09 16 32 H 0.02 0.47 7.83 -51.93 -0.41 0.06 16 33 H 0.06 1.25 8.08 -51.93 -0.42 0.83 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.45 7.38 -51.93 -0.38 0.06 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.05 0.68 7.25 -51.93 -0.38 0.31 16 38 H 0.08 1.19 6.09 -51.93 -0.32 0.87 16 39 H 0.10 1.01 6.48 -51.93 -0.34 0.67 16 40 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 317.28 15.07 4.78 4.78 Total: -1.00 -32.29 317.28 -7.94 -40.23 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -6.27 Total: -3.03 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.09 Total: -2.06 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: -1.06 Total: -43.07 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: -0.28 Total: -13.18 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.29 -7.94 -40.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040745.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.023 kcal (2) G-P(sol) polarization free energy of solvation -32.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds