Wall clock time and date at job start Mon Mar 30 2020 00:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46497 * 120.00257 * 2 1 4 4 C 1.34783 * 119.99816 * 179.97438 * 2 1 3 5 5 O 1.21276 * 119.99923 * 4.59875 * 4 2 1 6 6 C 1.50700 * 119.99807 * 184.59703 * 4 2 1 7 7 H 1.08999 * 110.63917 * 328.04457 * 6 4 2 8 8 C 1.55156 * 110.87059 * 91.29265 * 6 4 2 9 9 C 1.54916 * 101.57694 * 153.93711 * 8 6 4 10 10 N 1.47418 * 104.83257 * 322.98871 * 9 8 6 11 11 C 1.34784 * 125.64676 * 204.09585 * 10 9 8 12 12 O 1.21281 * 119.99340 * 180.02562 * 11 10 9 13 13 C 1.50695 * 120.00066 * 0.03869 * 11 10 9 14 14 C 1.53001 * 109.47110 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.47244 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99782 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00032 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46682 * 90.00541 * 19 17 15 21 21 H 1.48495 * 109.47106 * 210.00421 * 19 17 15 22 22 H 1.48502 * 109.47142 * 330.00641 * 19 17 15 23 23 C 1.47019 * 108.70420 * 24.13129 * 10 9 8 24 24 H 1.09004 * 109.47151 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47466 * 299.99644 * 1 2 3 26 26 H 1.08998 * 109.47359 * 59.99921 * 1 2 3 27 27 H 1.09000 * 109.47093 * 274.20893 * 3 2 1 28 28 H 1.09002 * 109.46537 * 34.20531 * 3 2 1 29 29 H 1.09003 * 109.47507 * 154.20376 * 3 2 1 30 30 H 1.09000 * 111.00465 * 272.00772 * 8 6 4 31 31 H 1.08997 * 111.00466 * 35.86493 * 8 6 4 32 32 H 1.09002 * 110.36142 * 204.15402 * 9 8 6 33 33 H 1.08996 * 110.36524 * 81.83253 * 9 8 6 34 34 H 1.08994 * 109.47623 * 300.00435 * 13 11 10 35 35 H 1.09004 * 109.46554 * 60.00700 * 13 11 10 36 36 H 1.09003 * 109.47177 * 300.00330 * 14 13 11 37 37 H 1.08994 * 109.46773 * 60.00035 * 14 13 11 38 38 H 0.96998 * 119.99876 * 179.97438 * 18 17 15 39 39 H 1.09000 * 109.88475 * 239.52103 * 23 10 9 40 40 H 1.09007 * 110.01318 * 118.42760 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5354 -2.2159 -0.0832 6 6 3.6422 -1.1693 0.1051 7 1 4.0618 -0.2837 -0.3720 8 6 4.0931 -1.2602 1.5869 9 6 5.4899 -1.9154 1.4473 10 7 5.3444 -2.8826 0.3443 11 6 6.1066 -3.9779 0.1544 12 8 5.8962 -4.7063 -0.7923 13 6 7.2198 -4.2977 1.1185 14 6 7.9237 -5.5824 0.6769 15 6 9.0365 -5.9025 1.6413 16 1 9.2234 -5.2542 2.4845 17 6 9.8161 -7.0230 1.4471 18 7 9.5888 -7.8121 0.4199 19 14 11.1960 -7.4194 2.6421 20 1 10.6727 -8.2775 3.7353 21 1 12.2806 -8.1370 1.9254 22 1 11.7315 -6.1586 3.2157 23 6 4.2309 -2.4541 -0.5147 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 2.3139 1.6210 -1.0249 28 1 1.6431 2.0082 0.5777 29 1 3.1805 1.1207 0.4472 30 1 4.1695 -0.2688 2.0336 31 1 3.4193 -1.8953 2.1621 32 1 5.7615 -2.4296 2.3693 33 1 6.2382 -1.1637 1.1965 34 1 7.9368 -3.4768 1.1308 35 1 6.8068 -4.4344 2.1179 36 1 7.2068 -6.4035 0.6643 37 1 8.3366 -5.4453 -0.3225 38 1 10.1375 -8.6002 0.2830 39 1 3.4684 -3.2323 -0.5489 40 1 4.5945 -2.2472 -1.5213 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436723607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:09 Heat of formation + Delta-G solvation = -71.515223 kcal Electronic energy + Delta-G solvation = -20410.366437 eV Core-core repulsion = 17225.135714 eV Total energy + Delta-G solvation = -3185.230723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.157 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69490 -39.17166 -36.93001 -35.88009 -33.43725 -32.05710 -30.79303 -29.38068 -28.38746 -26.75383 -25.63630 -23.57364 -22.14589 -21.12965 -19.23778 -18.70269 -17.87973 -17.01187 -16.32550 -15.97570 -15.78175 -15.52981 -14.84174 -14.39197 -14.21139 -13.76620 -13.66023 -13.38259 -13.10967 -12.98908 -12.77791 -12.43266 -12.29942 -12.12115 -12.01197 -11.81757 -11.50521 -11.14210 -11.03316 -10.89554 -10.57364 -10.06165 -9.91591 -9.61624 -9.14892 -9.09651 -8.98697 -8.37478 -8.27908 -5.92946 -3.97424 2.26025 2.57747 3.27755 3.31176 3.35392 3.41427 3.44013 4.12788 4.25769 4.35141 4.49898 4.59404 4.77867 4.88565 4.99316 5.05985 5.12518 5.16597 5.20169 5.41822 5.42646 5.45421 5.48223 5.58182 5.78958 5.83210 5.96465 6.11131 6.24987 6.27301 6.54988 6.91831 6.93003 7.77724 7.83022 7.87795 7.90245 8.10956 8.41573 8.78863 9.11148 9.65844 11.18102 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.049703 B = 0.003212 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.214122 B = 8715.883432 C = 9004.656849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.624 5.624 3 C 0.075 3.925 4 C 0.525 3.475 5 O -0.528 6.528 6 C -0.125 4.125 7 H 0.106 0.894 8 C -0.117 4.117 9 C 0.104 3.896 10 N -0.631 5.631 11 C 0.526 3.474 12 O -0.530 6.530 13 C -0.123 4.123 14 C 0.036 3.964 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.119 3.881 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.024 0.976 37 H 0.024 0.976 38 H 0.261 0.739 39 H 0.085 0.915 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.380 23.152 2.225 27.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C -0.068 4.068 4 C 0.313 3.687 5 O -0.404 6.404 6 C -0.147 4.147 7 H 0.124 0.876 8 C -0.155 4.155 9 C -0.019 4.019 10 N -0.368 5.368 11 C 0.317 3.683 12 O -0.404 6.404 13 C -0.163 4.163 14 C -0.002 4.002 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.005 4.005 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.698 21.927 1.542 27.012 hybrid contribution 0.683 0.059 0.606 0.915 sum -15.015 21.986 2.147 26.711 Atomic orbital electron populations 1.21686 0.79091 1.04358 1.01203 1.47702 1.07202 1.06385 1.74591 1.21870 0.97562 0.85154 1.02215 1.20395 0.89676 0.83210 0.75448 1.90726 1.69931 1.31102 1.48607 1.22382 0.92042 1.00908 0.99372 0.87612 1.22763 0.97174 1.02051 0.93516 1.22260 0.96172 0.92037 0.91468 1.48701 1.33958 1.26087 1.28100 1.21352 0.82327 0.77841 0.86804 1.90685 1.69886 1.47922 1.31936 1.21850 0.94229 1.03022 0.97183 1.18920 0.94609 0.89702 0.96937 1.21208 1.15423 1.09101 1.10726 0.92606 1.25030 0.97616 0.96301 0.95475 1.70000 1.39731 1.14595 1.28486 0.86587 0.81877 0.78411 0.81041 1.20681 1.21237 1.19896 1.21701 0.90122 0.94653 0.93974 0.89444 0.92213 0.92244 0.92303 0.90978 0.90320 0.89306 0.89873 0.89666 0.91075 0.90278 0.90282 0.95777 0.95786 0.92948 0.89699 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.70 59.85 0.64 1.18 16 2 N -0.62 -4.97 3.27 -189.52 -0.62 -5.59 16 3 C 0.08 0.31 10.14 59.85 0.61 0.92 16 4 C 0.53 5.90 6.85 -10.98 -0.08 5.83 16 5 O -0.53 -8.28 14.96 5.56 0.08 -8.20 16 6 C -0.13 -1.22 2.36 -89.94 -0.21 -1.43 16 7 H 0.11 0.73 6.53 -51.93 -0.34 0.39 16 8 C -0.12 -0.99 6.44 -24.58 -0.16 -1.15 16 9 C 0.10 1.13 6.69 -2.53 -0.02 1.11 16 10 N -0.63 -10.02 3.33 -170.52 -0.57 -10.59 16 11 C 0.53 10.99 7.85 -10.98 -0.09 10.90 16 12 O -0.53 -13.49 16.31 5.56 0.09 -13.40 16 13 C -0.12 -2.60 4.64 -27.88 -0.13 -2.73 16 14 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 15 C -0.53 -15.15 9.11 -34.44 -0.31 -15.47 16 16 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -27.88 13.29 55.43 0.74 -27.14 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.12 1.72 6.41 -3.07 -0.02 1.70 16 24 H 0.09 0.79 6.91 -51.93 -0.36 0.43 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.18 8.10 -51.93 -0.42 -0.24 16 29 H 0.08 0.25 5.83 -51.93 -0.30 -0.05 16 30 H 0.09 0.46 7.92 -51.93 -0.41 0.05 16 31 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 32 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.08 1.53 7.85 -51.93 -0.41 1.12 16 36 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.08 1.47 6.78 -51.93 -0.35 1.12 16 40 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 329.47 15.07 4.97 4.97 Total: -1.00 -37.98 329.47 -6.63 -44.61 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -6.32 Total: -4.83 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 0.02 Total: 3.32 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.45 Total: -43.32 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -37.98 -6.63 -44.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436723607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.908 kcal (2) G-P(sol) polarization free energy of solvation -37.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds