Wall clock time and date at job start Mon Mar 30 2020 01:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.53000 * 109.47597 * 189.99795 * 6 5 4 8 8 C 1.50689 * 109.47835 * 179.97438 * 7 6 5 9 9 O 1.21289 * 120.00035 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00566 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99534 * 359.97438 * 10 8 7 12 12 C 1.46498 * 120.00391 * 179.97438 * 10 8 7 13 13 C 1.50702 * 109.47080 * 89.99937 * 12 10 8 14 14 H 1.08004 * 119.99853 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00436 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00557 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99728 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47314 * 89.99605 * 17 15 13 19 19 H 1.48500 * 109.47136 * 209.99932 * 17 15 13 20 20 H 1.48508 * 109.46965 * 329.99752 * 17 15 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 22 22 C 1.53042 * 109.52278 * 298.25596 * 21 5 4 23 23 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 24 24 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 25 25 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 26 26 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 27 27 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 28 28 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 29 29 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 30 30 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 31 31 H 1.08997 * 109.47358 * 309.99752 * 6 5 4 32 32 H 1.09001 * 109.47788 * 69.99563 * 6 5 4 33 33 H 1.09007 * 109.46763 * 300.00403 * 7 6 5 34 34 H 1.09001 * 109.46741 * 59.99127 * 7 6 5 35 35 H 1.08997 * 109.47322 * 90.00390 * 11 10 8 36 36 H 1.08999 * 109.46698 * 210.00111 * 11 10 8 37 37 H 1.08993 * 109.47202 * 330.00117 * 11 10 8 38 38 H 1.08997 * 109.47206 * 209.99648 * 12 10 8 39 39 H 1.08999 * 109.47241 * 330.00408 * 12 10 8 40 40 H 0.96994 * 120.00224 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.46313 * 58.27251 * 21 5 4 42 42 H 1.09000 * 109.46480 * 178.25361 * 21 5 4 43 43 H 1.08997 * 109.50758 * 179.11703 * 22 21 5 44 44 H 1.08998 * 109.50897 * 299.20258 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.9172 -0.0990 2.5660 8 6 7.4118 -0.0035 2.7324 9 8 8.0551 0.7379 2.0200 10 7 8.0340 -0.7426 3.6721 11 6 7.2570 -1.6386 4.5323 12 6 9.4871 -0.6501 3.8334 13 6 9.8141 0.4329 4.8291 14 1 9.0189 0.9957 5.2953 15 6 11.1282 0.7047 5.1455 16 7 11.4136 1.6501 6.0140 17 14 12.5035 -0.2692 4.3396 18 1 12.9239 0.4106 3.0881 19 1 13.6590 -0.3554 5.2683 20 1 12.0208 -1.6372 4.0217 21 6 3.5710 -0.6600 1.2779 22 6 2.0417 -0.7151 1.2536 23 1 -0.3633 0.5184 0.8873 24 1 -0.3634 0.5092 -0.8926 25 1 -0.3633 -1.0277 0.0054 26 1 1.8942 -0.5163 -0.8882 27 1 1.6470 1.9699 0.8679 28 1 1.7172 1.9445 -0.9111 29 1 3.9400 2.4612 0.0747 30 1 3.9676 0.9199 -0.8148 31 1 5.9573 0.5432 0.5102 32 1 5.7414 1.8602 1.6879 33 1 5.4283 0.1922 3.4958 34 1 5.6443 -1.1248 2.3181 35 1 7.1882 -2.6212 4.0656 36 1 7.7492 -1.7299 5.5005 37 1 6.2556 -1.2313 4.6708 38 1 9.8741 -1.6033 4.1934 39 1 9.9448 -0.4112 2.8735 40 1 12.3381 1.8415 6.2363 41 1 3.9666 -1.1655 0.3970 42 1 3.9378 -1.1558 2.1766 43 1 1.7152 -1.7549 1.2381 44 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034673834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:21 Heat of formation + Delta-G solvation = -43.661572 kcal Electronic energy + Delta-G solvation = -20918.038485 eV Core-core repulsion = 17869.848681 eV Total energy + Delta-G solvation = -3048.189804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.66092 -38.75347 -35.30167 -34.79018 -32.56652 -31.40065 -30.66674 -28.66623 -27.39481 -25.84293 -23.92564 -23.24931 -22.16727 -20.91469 -19.79311 -18.33534 -16.95331 -16.79700 -15.57543 -15.46255 -15.28938 -14.87537 -14.63236 -14.38848 -14.21375 -13.93277 -13.45582 -12.95392 -12.64592 -12.57712 -12.35731 -12.18334 -12.17265 -12.02289 -11.91833 -11.58034 -11.36310 -11.26743 -11.06938 -10.87382 -10.78113 -10.51795 -10.42252 -10.27611 -10.13625 -9.53127 -8.98437 -8.57952 -8.32638 -7.69020 -6.07578 -4.06284 3.29744 3.35511 3.36421 3.37455 3.65767 4.07380 4.40492 4.54653 4.59799 4.61905 4.96344 5.10778 5.14851 5.20960 5.25083 5.27534 5.32592 5.37079 5.44241 5.46052 5.51487 5.56408 5.68745 5.72658 5.78899 5.85037 5.85539 5.91718 5.96771 5.97828 6.08275 6.17944 6.22169 6.25724 6.70560 6.94614 7.04917 7.07465 7.34940 7.62221 8.26120 8.48389 8.94154 9.00344 9.52700 11.05906 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043574 B = 0.003400 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.433017 B = 8232.590485 C = 8448.752693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 C -0.111 4.111 4 C 0.056 3.944 5 N -0.539 5.539 6 C 0.073 3.927 7 C -0.141 4.141 8 C 0.507 3.493 9 O -0.543 6.543 10 N -0.599 5.599 11 C 0.083 3.917 12 C 0.215 3.785 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.898 5.898 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.045 3.955 22 C -0.111 4.111 23 H 0.055 0.945 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.264 0.736 41 H 0.031 0.969 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.487 -6.953 -10.191 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.148 4.148 4 C -0.072 4.072 5 N -0.264 5.264 6 C -0.055 4.055 7 C -0.181 4.181 8 C 0.294 3.706 9 O -0.421 6.421 10 N -0.331 5.331 11 C -0.061 4.061 12 C 0.094 3.906 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.083 4.083 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.187 -6.246 -10.065 23.405 hybrid contribution 1.216 -0.849 -0.851 1.710 sum -18.971 -7.095 -10.916 23.009 Atomic orbital electron populations 1.21807 0.95214 1.01522 1.01727 1.21198 0.95495 0.96412 0.98310 1.21644 0.94742 0.96370 1.02076 1.22064 0.95547 0.99240 0.90382 1.62014 1.12857 1.13897 1.37604 1.21826 0.85512 1.01009 0.97148 1.21803 0.94038 1.01084 1.01185 1.20324 0.89277 0.80389 0.80658 1.90667 1.67528 1.38306 1.45631 1.47843 1.09561 1.41836 1.33858 1.21663 0.96018 0.92696 0.95680 1.19657 0.75748 0.97296 0.97880 1.21338 0.93725 1.18091 1.23521 0.90759 1.24866 0.98517 0.94952 0.94740 1.69896 1.19199 1.31047 1.33507 0.86839 0.82054 0.80990 0.79726 1.19915 1.21064 1.19096 1.22241 0.95568 0.89416 1.01035 1.21657 0.94838 1.00056 0.98336 0.92564 0.92885 0.92853 0.91727 0.91002 0.91758 0.90580 0.95033 0.94117 0.89598 0.88435 0.89510 0.93760 0.90584 0.92010 0.95288 0.94611 0.92564 0.95113 0.89998 0.91770 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.20 37.16 0.34 -0.65 16 2 C -0.10 -0.78 2.79 -90.49 -0.25 -1.03 16 3 C -0.11 -0.97 5.38 -26.65 -0.14 -1.12 16 4 C 0.06 0.60 5.42 -3.84 -0.02 0.57 16 5 N -0.54 -6.50 4.80 -234.68 -1.13 -7.63 16 6 C 0.07 1.06 4.56 -3.83 -0.02 1.04 16 7 C -0.14 -2.07 3.50 -27.89 -0.10 -2.16 16 8 C 0.51 10.39 7.67 -10.99 -0.08 10.31 16 9 O -0.54 -13.50 15.56 5.55 0.09 -13.41 16 10 N -0.60 -12.48 2.86 -182.96 -0.52 -13.00 16 11 C 0.08 1.28 10.24 59.85 0.61 1.89 16 12 C 0.21 5.34 4.23 -5.19 -0.02 5.32 16 13 C -0.53 -15.41 9.94 -34.44 -0.34 -15.76 16 14 H 0.07 2.38 8.06 -52.48 -0.42 1.95 16 15 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 16 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 17 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 18 H -0.27 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 21 C 0.05 0.47 4.85 -3.83 -0.02 0.45 16 22 C -0.11 -0.96 5.38 -26.64 -0.14 -1.10 16 23 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.82 8.12 -51.93 -0.42 0.40 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.04 0.63 8.03 -51.93 -0.42 0.21 16 32 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 33 H 0.10 1.35 7.40 -51.92 -0.38 0.96 16 34 H 0.09 1.06 6.17 -51.93 -0.32 0.74 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 37 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 38 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 39 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 40 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 41 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.81 5.81 -51.93 -0.30 0.50 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -33.74 342.11 -8.57 -42.31 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -7.99 Total: -3.10 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -0.28 Total: -0.22 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.88 Total: -47.87 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: 0.09 Total: -13.41 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.74 -8.57 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034673834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.349 kcal (2) G-P(sol) polarization free energy of solvation -33.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds