Wall clock time and date at job start Mon Mar 30 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53123 * 109.57495 * 2 1 4 4 C 1.53034 * 109.27992 * 177.60435 * 3 2 1 5 5 N 1.46847 * 109.51345 * 300.80438 * 4 3 2 6 6 C 1.46895 * 110.99982 * 185.84805 * 5 4 3 7 7 C 1.53000 * 109.47597 * 189.99795 * 6 5 4 8 8 C 1.50689 * 109.47835 * 179.97438 * 7 6 5 9 9 O 1.21289 * 120.00035 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00566 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99534 * 359.97438 * 10 8 7 12 12 C 1.46498 * 120.00391 * 179.97438 * 10 8 7 13 13 C 1.50702 * 109.47080 * 89.99937 * 12 10 8 14 14 H 1.08004 * 119.99853 * 0.02562 * 13 12 10 15 15 C 1.37876 * 120.00436 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00557 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99728 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47314 * 89.99605 * 17 15 13 19 19 H 1.48500 * 109.47136 * 209.99932 * 17 15 13 20 20 H 1.48508 * 109.46965 * 329.99752 * 17 15 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 5 4 3 22 22 C 1.53042 * 109.52278 * 298.25596 * 21 5 4 23 23 H 1.09000 * 109.46968 * 300.29446 * 1 2 3 24 24 H 1.09000 * 109.47430 * 60.29800 * 1 2 3 25 25 H 1.09002 * 109.46935 * 180.29882 * 1 2 3 26 26 H 1.09003 * 109.52281 * 239.83230 * 2 1 3 27 27 H 1.08997 * 109.51083 * 57.65029 * 3 2 1 28 28 H 1.08998 * 109.48980 * 297.53960 * 3 2 1 29 29 H 1.09002 * 109.46271 * 180.79158 * 4 3 2 30 30 H 1.08994 * 109.46242 * 60.81457 * 4 3 2 31 31 H 1.08997 * 109.47358 * 309.99752 * 6 5 4 32 32 H 1.09001 * 109.47788 * 69.99563 * 6 5 4 33 33 H 1.09007 * 109.46763 * 300.00403 * 7 6 5 34 34 H 1.09001 * 109.46741 * 59.99127 * 7 6 5 35 35 H 1.08997 * 109.47322 * 90.00390 * 11 10 8 36 36 H 1.08999 * 109.46698 * 210.00111 * 11 10 8 37 37 H 1.08993 * 109.47202 * 330.00117 * 11 10 8 38 38 H 1.08997 * 109.47206 * 209.99648 * 12 10 8 39 39 H 1.08999 * 109.47241 * 330.00408 * 12 10 8 40 40 H 0.96994 * 120.00224 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.46313 * 58.27251 * 21 5 4 42 42 H 1.09000 * 109.46480 * 178.25361 * 21 5 4 43 43 H 1.08997 * 109.50758 * 179.11703 * 22 21 5 44 44 H 1.08998 * 109.50897 * 299.20258 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0430 1.4427 0.0000 4 6 3.5721 1.4353 0.0604 5 7 4.0116 0.7408 1.2773 6 6 5.4685 0.8344 1.4399 7 6 5.9172 -0.0990 2.5660 8 6 7.4118 -0.0035 2.7324 9 8 8.0551 0.7379 2.0200 10 7 8.0340 -0.7426 3.6721 11 6 7.2570 -1.6386 4.5323 12 6 9.4871 -0.6501 3.8334 13 6 9.8141 0.4329 4.8291 14 1 9.0189 0.9957 5.2953 15 6 11.1282 0.7047 5.1455 16 7 11.4136 1.6501 6.0140 17 14 12.5035 -0.2692 4.3396 18 1 12.9239 0.4106 3.0881 19 1 13.6590 -0.3554 5.2683 20 1 12.0208 -1.6372 4.0217 21 6 3.5710 -0.6600 1.2779 22 6 2.0417 -0.7151 1.2536 23 1 -0.3633 0.5184 0.8873 24 1 -0.3634 0.5092 -0.8926 25 1 -0.3633 -1.0277 0.0054 26 1 1.8942 -0.5163 -0.8882 27 1 1.6470 1.9699 0.8679 28 1 1.7172 1.9445 -0.9111 29 1 3.9400 2.4612 0.0747 30 1 3.9676 0.9199 -0.8148 31 1 5.9573 0.5432 0.5102 32 1 5.7414 1.8602 1.6879 33 1 5.4283 0.1922 3.4958 34 1 5.6443 -1.1248 2.3181 35 1 7.1882 -2.6212 4.0656 36 1 7.7492 -1.7299 5.5005 37 1 6.2556 -1.2313 4.6708 38 1 9.8741 -1.6033 4.1934 39 1 9.9448 -0.4112 2.8735 40 1 12.3381 1.8415 6.2363 41 1 3.9666 -1.1655 0.3970 42 1 3.9378 -1.1558 2.1766 43 1 1.7152 -1.7549 1.2381 44 1 1.6456 -0.2224 2.1415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034673834.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:20 Heat of formation + Delta-G solvation = -66.949551 kcal Electronic energy + Delta-G solvation = -20919.048328 eV Core-core repulsion = 17869.848681 eV Total energy + Delta-G solvation = -3049.199647 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.94494 -39.92788 -36.72411 -35.99938 -34.71208 -32.47599 -31.59973 -30.34818 -28.39925 -27.29910 -25.17649 -24.32934 -23.43013 -22.04933 -20.53568 -19.87031 -19.16093 -18.15219 -17.13652 -16.88633 -16.39184 -16.19971 -15.69793 -15.47331 -15.28608 -14.92831 -14.65810 -14.55607 -14.12731 -13.78557 -13.65478 -13.43052 -13.35262 -13.22725 -12.96275 -12.77295 -12.70883 -12.46890 -12.25997 -12.16542 -12.05732 -11.99590 -11.75719 -11.49885 -11.14326 -11.03894 -10.84599 -10.65953 -9.40699 -9.29193 -8.35238 -6.40636 1.31660 1.36073 1.44566 1.77512 2.27263 2.30215 2.95292 2.99349 3.73849 3.81106 3.91287 3.94009 4.00025 4.11261 4.34869 4.36777 4.45154 4.48513 4.58559 4.62984 4.66624 4.75053 4.80709 4.83671 4.88527 4.92061 4.94093 4.97545 4.99641 5.02622 5.06424 5.18748 5.27741 5.32265 5.39026 5.44736 5.58922 5.60898 6.05793 6.17930 6.22660 6.60793 6.68615 7.19995 7.40383 8.81928 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043574 B = 0.003400 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.433017 B = 8232.590485 C = 8448.752693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 C -0.105 4.105 4 C 0.052 3.948 5 N -0.541 5.541 6 C 0.080 3.920 7 C -0.122 4.122 8 C 0.496 3.504 9 O -0.599 6.599 10 N -0.608 5.608 11 C 0.076 3.924 12 C 0.222 3.778 13 C -0.537 4.537 14 H 0.027 0.973 15 C 0.009 3.991 16 N -0.946 5.946 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.237 1.237 21 C 0.040 3.960 22 C -0.107 4.107 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.052 0.948 39 H 0.017 0.983 40 H 0.269 0.731 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.011 -9.624 -10.925 26.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.114 4.114 3 C -0.143 4.143 4 C -0.076 4.076 5 N -0.266 5.266 6 C -0.048 4.048 7 C -0.161 4.161 8 C 0.285 3.715 9 O -0.480 6.480 10 N -0.339 5.339 11 C -0.066 4.066 12 C 0.099 3.901 13 C -0.576 4.576 14 H 0.046 0.954 15 C -0.189 4.189 16 N -0.586 5.586 17 Si 0.773 3.227 18 H -0.203 1.203 19 H -0.199 1.199 20 H -0.160 1.160 21 C -0.087 4.087 22 C -0.145 4.145 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.131 0.869 34 H 0.141 0.859 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.078 0.922 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.770 -8.958 -10.778 25.891 hybrid contribution 1.606 0.055 -0.591 1.712 sum -20.164 -8.904 -11.369 24.802 Atomic orbital electron populations 1.21767 0.94025 1.02133 1.01964 1.21204 0.96453 0.95597 0.98140 1.21620 0.92957 0.97254 1.02483 1.22142 0.97067 0.98626 0.89791 1.62039 1.10726 1.15457 1.38386 1.21617 0.87286 0.99428 0.96476 1.21738 0.89339 1.03185 1.01876 1.21359 0.91521 0.79059 0.79604 1.90635 1.69194 1.40502 1.47713 1.47987 1.08472 1.42738 1.34718 1.21998 0.96438 0.93578 0.94573 1.19340 0.78836 0.96456 0.95421 1.21576 0.92876 1.18954 1.24195 0.95438 1.25890 1.01613 0.96132 0.95245 1.70051 1.20163 1.33103 1.35324 0.85683 0.78272 0.80532 0.78252 1.20278 1.19887 1.15981 1.22380 0.96902 0.88040 1.01394 1.21648 0.93374 1.01150 0.98315 0.92636 0.92390 0.92056 0.91767 0.91483 0.90531 0.91450 0.95232 0.95564 0.92307 0.86906 0.85949 0.90009 0.91624 0.89111 0.93036 0.96460 0.92228 0.95184 0.89104 0.90049 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 71.98 0.66 -0.91 16 2 C -0.10 -1.33 2.79 -10.71 -0.03 -1.36 16 3 C -0.11 -1.69 5.38 30.65 0.16 -1.53 16 4 C 0.05 1.07 5.42 86.32 0.47 1.54 16 5 N -0.54 -12.45 4.80 -896.40 -4.31 -16.76 16 6 C 0.08 2.33 4.56 86.30 0.39 2.72 16 7 C -0.12 -3.37 3.50 29.84 0.10 -3.26 16 8 C 0.50 20.25 7.67 87.65 0.67 20.92 16 9 O -0.60 -30.72 15.56 -3.06 -0.05 -30.77 16 10 N -0.61 -24.79 2.86 -851.15 -2.43 -27.22 16 11 C 0.08 2.11 10.24 127.77 1.31 3.42 16 12 C 0.22 10.97 4.23 85.63 0.36 11.34 16 13 C -0.54 -32.22 9.94 25.60 0.25 -31.97 16 14 H 0.03 1.84 8.06 -2.91 -0.02 1.82 16 15 C 0.01 0.54 5.47 84.65 0.46 1.01 16 16 N -0.95 -60.72 13.96 21.45 0.30 -60.42 16 17 Si 0.95 44.98 27.47 68.60 1.88 46.86 16 18 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 21 C 0.04 0.72 4.85 86.33 0.42 1.14 16 22 C -0.11 -1.54 5.38 30.65 0.16 -1.38 16 23 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.49 8.12 -2.39 -0.02 1.47 16 30 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.03 0.82 8.03 -2.39 -0.02 0.80 16 32 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 33 H 0.11 2.84 7.40 -2.38 -0.02 2.82 16 34 H 0.12 2.55 6.17 -2.39 -0.01 2.53 16 35 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 37 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 38 H 0.05 2.31 7.13 -2.39 -0.02 2.30 16 39 H 0.02 0.92 6.85 -2.39 -0.02 0.90 16 40 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 41 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.09 1.45 5.81 -2.39 -0.01 1.44 16 43 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.07 342.11 1.69 -75.38 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.88 Total: 11.23 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.41 Total: 1.69 kcal Atomic # 7 Polarization: -97.95 SS G_CDS: -6.44 Total: -104.39 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.05 Total: -30.77 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -77.07 1.69 -75.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034673834.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.427 kcal (2) G-P(sol) polarization free energy of solvation -77.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds