Wall clock time and date at job start Mon Mar 30 2020 01:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00402 * 2 1 4 4 H 1.48491 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46854 * 299.99890 * 3 2 1 6 6 H 1.48496 * 109.46945 * 59.99401 * 3 2 1 7 7 C 1.37881 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00066 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.46848 * 110.99689 * 170.00242 * 10 9 7 12 12 C 1.53039 * 109.52102 * 185.83603 * 11 10 9 13 13 C 1.53116 * 109.28151 * 300.81855 * 12 11 10 14 14 C 1.53000 * 109.52285 * 177.55754 * 13 12 11 15 15 N 1.46906 * 109.47072 * 175.00311 * 14 13 12 16 16 C 1.47020 * 110.99867 * 293.63551 * 15 14 13 17 17 C 1.53097 * 109.25663 * 177.60414 * 16 15 14 18 18 O 1.43021 * 109.25605 * 56.85187 * 17 16 15 19 19 C 1.43021 * 113.73613 * 301.32802 * 18 17 16 20 20 C 1.47009 * 111.00252 * 170.00094 * 15 14 13 21 21 C 1.53124 * 109.15991 * 57.65503 * 13 12 11 22 22 C 1.46854 * 110.99948 * 294.20649 * 10 9 7 23 23 H 0.97002 * 119.99386 * 0.02562 * 1 2 3 24 24 H 1.09010 * 109.47005 * 60.00096 * 9 7 2 25 25 H 1.08999 * 109.47079 * 300.00161 * 9 7 2 26 26 H 1.08998 * 109.46362 * 65.82525 * 11 10 9 27 27 H 1.08994 * 109.45518 * 305.84702 * 11 10 9 28 28 H 1.08999 * 109.50197 * 180.88070 * 12 11 10 29 29 H 1.08998 * 109.53470 * 60.78379 * 12 11 10 30 30 H 1.08999 * 109.52717 * 297.68954 * 13 12 11 31 31 H 1.08993 * 109.47007 * 55.00361 * 14 13 12 32 32 H 1.08996 * 109.47340 * 295.00167 * 14 13 12 33 33 H 1.08998 * 109.50492 * 297.54142 * 16 15 14 34 34 H 1.09007 * 109.50106 * 57.67293 * 16 15 14 35 35 H 1.08995 * 109.50808 * 296.91455 * 17 16 15 36 36 H 1.08995 * 109.54142 * 176.80219 * 17 16 15 37 37 H 1.08995 * 109.50535 * 298.73468 * 19 18 17 38 38 H 1.09001 * 109.53535 * 178.62697 * 19 18 17 39 39 H 1.08999 * 109.50465 * 302.33238 * 20 15 14 40 40 H 1.08998 * 109.50618 * 62.41050 * 20 15 14 41 41 H 1.09000 * 109.50292 * 62.28455 * 21 13 12 42 42 H 1.08998 * 109.50635 * 182.40159 * 21 13 12 43 43 H 1.08995 * 109.46301 * 294.18371 * 22 10 9 44 44 H 1.09000 * 109.45863 * 54.15862 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5214 -4.8930 0.2385 12 6 2.5578 -6.0105 0.3766 13 6 3.3916 -6.0879 -0.9053 14 6 4.4694 -7.1627 -0.7500 15 7 5.1910 -7.3196 -2.0200 16 6 4.3098 -7.8654 -3.0627 17 6 5.0833 -7.9562 -4.3808 18 8 6.2529 -8.7562 -4.1871 19 6 7.1339 -8.2533 -3.1789 20 6 6.3812 -8.1654 -1.8488 21 6 4.0548 -4.7308 -1.1562 22 6 2.9749 -3.6504 -1.2499 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8898 25 1 0.6240 -2.5567 0.8903 26 1 0.8602 -5.1126 -0.5997 27 1 0.9356 -4.8258 1.1552 28 1 2.0490 -6.9609 0.5377 29 1 3.2109 -5.7993 1.2233 30 1 2.7449 -6.3393 -1.7459 31 1 4.0022 -8.1092 -0.4783 32 1 5.1692 -6.8654 0.0310 33 1 3.9717 -8.8593 -2.7698 34 1 3.4482 -7.2100 -3.1906 35 1 5.3752 -6.9561 -4.7011 36 1 4.4522 -8.4129 -5.1431 37 1 7.4855 -7.2618 -3.4644 38 1 7.9859 -8.9246 -3.0714 39 1 7.0316 -7.7292 -1.0906 40 1 6.0762 -9.1639 -1.5357 41 1 4.7313 -4.4987 -0.3337 42 1 4.6155 -4.7668 -2.0902 43 1 2.3068 -3.8757 -2.0812 44 1 3.4448 -2.6807 -1.4142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051958547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:33 Heat of formation + Delta-G solvation = -46.789298 kcal Electronic energy + Delta-G solvation = -21308.029028 eV Core-core repulsion = 18259.703596 eV Total energy + Delta-G solvation = -3048.325432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.87528 -38.36154 -36.04078 -33.56767 -32.05612 -31.36047 -30.23885 -28.65206 -26.69606 -24.66328 -24.23985 -22.60391 -22.09541 -20.80968 -20.31750 -19.10393 -16.71114 -16.31517 -16.23499 -15.48636 -15.28236 -15.12868 -14.80121 -14.24901 -14.13628 -14.12933 -13.60814 -13.42850 -12.76217 -12.60084 -12.23230 -12.00546 -11.83445 -11.72184 -11.57762 -11.53094 -11.07379 -10.83091 -10.74535 -10.61863 -10.53191 -10.23931 -10.09569 -9.85605 -9.83835 -9.52686 -9.09571 -8.49216 -8.40883 -7.14726 -6.00035 -4.00909 3.32672 3.39960 3.45226 3.55257 3.70753 4.45165 4.64263 4.74627 4.79503 4.93862 4.98130 5.03507 5.14808 5.19403 5.25924 5.32997 5.35818 5.42629 5.55126 5.57502 5.64205 5.71838 5.75776 5.81318 5.88208 6.00242 6.11430 6.31002 6.32172 6.45737 6.49260 6.60854 6.78366 6.83555 6.85438 6.90142 6.94604 7.36814 7.41083 7.85191 8.15472 8.28716 8.61884 9.07613 9.63309 11.11001 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.003735 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.177713 B = 7495.652746 C = 7905.568164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.064 0.936 9 C 0.192 3.808 10 N -0.536 5.536 11 C 0.057 3.943 12 C -0.108 4.108 13 C -0.083 4.083 14 C 0.063 3.937 15 N -0.532 5.532 16 C 0.015 3.985 17 C 0.063 3.937 18 O -0.389 6.389 19 C 0.064 3.936 20 C 0.018 3.982 21 C -0.099 4.099 22 C 0.064 3.936 23 H 0.260 0.740 24 H -0.011 1.011 25 H 0.029 0.971 26 H 0.018 0.982 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.030 0.970 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.014 0.986 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.481 -17.569 -5.022 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.261 5.261 11 C -0.072 4.072 12 C -0.146 4.146 13 C -0.102 4.102 14 C -0.064 4.064 15 N -0.257 5.257 16 C -0.113 4.113 17 C -0.014 4.014 18 O -0.308 6.308 19 C -0.013 4.013 20 C -0.110 4.110 21 C -0.137 4.137 22 C -0.065 4.065 23 H 0.070 0.930 24 H 0.007 0.993 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.057 0.943 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.033 0.967 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 10.854 -17.074 -4.892 20.815 hybrid contribution -0.684 0.265 -0.140 0.747 sum 10.170 -16.809 -5.031 20.280 Atomic orbital electron populations 1.69976 1.06075 1.26578 1.51349 1.24999 0.94854 0.99313 0.95546 0.86456 0.80121 0.83484 0.77465 1.19633 1.21149 1.21048 1.21221 0.93541 0.89955 1.49580 0.91797 1.19705 0.90128 0.87539 0.95916 1.62036 1.27685 1.02489 1.33910 1.21959 0.94728 0.90674 0.99794 1.21593 0.97929 0.97539 0.97566 1.21223 0.95543 0.95370 0.98028 1.22223 0.96210 0.97606 0.90397 1.62183 1.07378 1.48322 1.07863 1.22834 0.96803 0.98846 0.92797 1.22678 0.86582 0.96012 0.96086 1.87964 1.33614 1.51657 1.57531 1.22653 0.92127 0.99926 0.86619 1.22766 0.93557 0.95933 0.98790 1.21541 0.97721 0.92799 1.01628 1.21965 0.95001 0.99159 0.90337 0.93046 0.99344 0.95334 0.96403 0.91562 0.92807 0.91317 0.91888 0.95131 0.90514 0.94257 0.89102 0.92065 0.88600 0.92143 0.88685 0.89616 0.94279 0.91880 0.91637 0.96736 0.90052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.50 -14.34 8.43 -34.44 -0.29 -14.63 16 8 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 9 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16 10 N -0.54 -11.74 4.65 -236.11 -1.10 -12.84 16 11 C 0.06 1.05 5.46 -3.83 -0.02 1.03 16 12 C -0.11 -1.56 5.38 -26.65 -0.14 -1.70 16 13 C -0.08 -1.12 2.18 -90.50 -0.20 -1.32 16 14 C 0.06 0.72 4.35 -3.82 -0.02 0.70 16 15 N -0.53 -5.88 4.25 -234.31 -0.99 -6.87 16 16 C 0.02 0.16 5.44 -3.71 -0.02 0.14 16 17 C 0.06 0.62 7.01 37.21 0.26 0.88 16 18 O -0.39 -4.30 10.83 -35.23 -0.38 -4.68 16 19 C 0.06 0.58 7.01 37.20 0.26 0.84 16 20 C 0.02 0.17 5.64 -3.72 -0.02 0.15 16 21 C -0.10 -1.55 5.24 -26.65 -0.14 -1.69 16 22 C 0.06 1.26 5.29 -3.83 -0.02 1.24 16 23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 24 H -0.01 -0.32 8.12 -51.92 -0.42 -0.74 16 25 H 0.03 0.81 7.99 -51.93 -0.41 0.39 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.97 6.29 -51.93 -0.33 0.64 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 1.77 6.70 -51.93 -0.35 1.42 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -30.60 335.97 -10.24 -40.84 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -8.08 Total: -4.17 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -0.47 Total: -7.84 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -1.36 Total: -46.02 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.38 Total: -4.68 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.60 -10.24 -40.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051958547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.947 kcal (2) G-P(sol) polarization free energy of solvation -30.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds