Wall clock time and date at job start Mon Mar 30 2020 01:27:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86802 * 120.00402 * 2 1
4 4 H 1.48491 * 109.47338 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.46854 * 299.99890 * 3 2 1
6 6 H 1.48496 * 109.46945 * 59.99401 * 3 2 1
7 7 C 1.37881 * 119.99876 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99835 * 180.02562 * 7 2 1
9 9 C 1.50697 * 120.00066 * 0.02562 * 7 2 1
10 10 N 1.46900 * 109.47020 * 179.97438 * 9 7 2
11 11 C 1.46848 * 110.99689 * 170.00242 * 10 9 7
12 12 C 1.53039 * 109.52102 * 185.83603 * 11 10 9
13 13 C 1.53116 * 109.28151 * 300.81855 * 12 11 10
14 14 C 1.53000 * 109.52285 * 177.55754 * 13 12 11
15 15 N 1.46906 * 109.47072 * 175.00311 * 14 13 12
16 16 C 1.47020 * 110.99867 * 293.63551 * 15 14 13
17 17 C 1.53097 * 109.25663 * 177.60414 * 16 15 14
18 18 O 1.43021 * 109.25605 * 56.85187 * 17 16 15
19 19 C 1.43021 * 113.73613 * 301.32802 * 18 17 16
20 20 C 1.47009 * 111.00252 * 170.00094 * 15 14 13
21 21 C 1.53124 * 109.15991 * 57.65503 * 13 12 11
22 22 C 1.46854 * 110.99948 * 294.20649 * 10 9 7
23 23 H 0.97002 * 119.99386 * 0.02562 * 1 2 3
24 24 H 1.09010 * 109.47005 * 60.00096 * 9 7 2
25 25 H 1.08999 * 109.47079 * 300.00161 * 9 7 2
26 26 H 1.08998 * 109.46362 * 65.82525 * 11 10 9
27 27 H 1.08994 * 109.45518 * 305.84702 * 11 10 9
28 28 H 1.08999 * 109.50197 * 180.88070 * 12 11 10
29 29 H 1.08998 * 109.53470 * 60.78379 * 12 11 10
30 30 H 1.08999 * 109.52717 * 297.68954 * 13 12 11
31 31 H 1.08993 * 109.47007 * 55.00361 * 14 13 12
32 32 H 1.08996 * 109.47340 * 295.00167 * 14 13 12
33 33 H 1.08998 * 109.50492 * 297.54142 * 16 15 14
34 34 H 1.09007 * 109.50106 * 57.67293 * 16 15 14
35 35 H 1.08995 * 109.50808 * 296.91455 * 17 16 15
36 36 H 1.08995 * 109.54142 * 176.80219 * 17 16 15
37 37 H 1.08995 * 109.50535 * 298.73468 * 19 18 17
38 38 H 1.09001 * 109.53535 * 178.62697 * 19 18 17
39 39 H 1.08999 * 109.50465 * 302.33238 * 20 15 14
40 40 H 1.08998 * 109.50618 * 62.41050 * 20 15 14
41 41 H 1.09000 * 109.50292 * 62.28455 * 21 13 12
42 42 H 1.08998 * 109.50635 * 182.40159 * 21 13 12
43 43 H 1.08995 * 109.46301 * 294.18371 * 22 10 9
44 44 H 1.09000 * 109.45863 * 54.15862 * 22 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8906 2.3964 -1.2125
6 1 1.8905 2.3964 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 7 2.2056 -3.6157 0.0005
11 6 1.5214 -4.8930 0.2385
12 6 2.5578 -6.0105 0.3766
13 6 3.3916 -6.0879 -0.9053
14 6 4.4694 -7.1627 -0.7500
15 7 5.1910 -7.3196 -2.0200
16 6 4.3098 -7.8654 -3.0627
17 6 5.0833 -7.9562 -4.3808
18 8 6.2529 -8.7562 -4.1871
19 6 7.1339 -8.2533 -3.1789
20 6 6.3812 -8.1654 -1.8488
21 6 4.0548 -4.7308 -1.1562
22 6 2.9749 -3.6504 -1.2499
23 1 -0.4849 0.8401 -0.0004
24 1 0.6247 -2.5571 -0.8898
25 1 0.6240 -2.5567 0.8903
26 1 0.8602 -5.1126 -0.5997
27 1 0.9356 -4.8258 1.1552
28 1 2.0490 -6.9609 0.5377
29 1 3.2109 -5.7993 1.2233
30 1 2.7449 -6.3393 -1.7459
31 1 4.0022 -8.1092 -0.4783
32 1 5.1692 -6.8654 0.0310
33 1 3.9717 -8.8593 -2.7698
34 1 3.4482 -7.2100 -3.1906
35 1 5.3752 -6.9561 -4.7011
36 1 4.4522 -8.4129 -5.1431
37 1 7.4855 -7.2618 -3.4644
38 1 7.9859 -8.9246 -3.0714
39 1 7.0316 -7.7292 -1.0906
40 1 6.0762 -9.1639 -1.5357
41 1 4.7313 -4.4987 -0.3337
42 1 4.6155 -4.7668 -2.0902
43 1 2.3068 -3.8757 -2.0812
44 1 3.4448 -2.6807 -1.4142
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000051958547.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:27:33
Heat of formation + Delta-G solvation = -46.789298 kcal
Electronic energy + Delta-G solvation = -21308.029028 eV
Core-core repulsion = 18259.703596 eV
Total energy + Delta-G solvation = -3048.325432 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.52 seconds
Orbital eigenvalues (eV)
-39.87528 -38.36154 -36.04078 -33.56767 -32.05612 -31.36047 -30.23885 -28.65206
-26.69606 -24.66328 -24.23985 -22.60391 -22.09541 -20.80968 -20.31750 -19.10393
-16.71114 -16.31517 -16.23499 -15.48636 -15.28236 -15.12868 -14.80121 -14.24901
-14.13628 -14.12933 -13.60814 -13.42850 -12.76217 -12.60084 -12.23230 -12.00546
-11.83445 -11.72184 -11.57762 -11.53094 -11.07379 -10.83091 -10.74535 -10.61863
-10.53191 -10.23931 -10.09569 -9.85605 -9.83835 -9.52686 -9.09571 -8.49216
-8.40883 -7.14726 -6.00035 -4.00909 3.32672 3.39960 3.45226 3.55257
3.70753 4.45165 4.64263 4.74627 4.79503 4.93862 4.98130 5.03507
5.14808 5.19403 5.25924 5.32997 5.35818 5.42629 5.55126 5.57502
5.64205 5.71838 5.75776 5.81318 5.88208 6.00242 6.11430 6.31002
6.32172 6.45737 6.49260 6.60854 6.78366 6.83555 6.85438 6.90142
6.94604 7.36814 7.41083 7.85191 8.15472 8.28716 8.61884 9.07613
9.63309 11.11001
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.029806 B = 0.003735 C = 0.003541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 939.177713 B = 7495.652746 C = 7905.568164
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.054 3.946
3 Si 0.897 3.103
4 H -0.272 1.272
5 H -0.285 1.285
6 H -0.284 1.284
7 C -0.504 4.504
8 H 0.064 0.936
9 C 0.192 3.808
10 N -0.536 5.536
11 C 0.057 3.943
12 C -0.108 4.108
13 C -0.083 4.083
14 C 0.063 3.937
15 N -0.532 5.532
16 C 0.015 3.985
17 C 0.063 3.937
18 O -0.389 6.389
19 C 0.064 3.936
20 C 0.018 3.982
21 C -0.099 4.099
22 C 0.064 3.936
23 H 0.260 0.740
24 H -0.011 1.011
25 H 0.029 0.971
26 H 0.018 0.982
27 H 0.066 0.934
28 H 0.053 0.947
29 H 0.068 0.932
30 H 0.063 0.937
31 H 0.030 0.970
32 H 0.076 0.924
33 H 0.039 0.961
34 H 0.091 0.909
35 H 0.061 0.939
36 H 0.096 0.904
37 H 0.060 0.940
38 H 0.095 0.905
39 H 0.085 0.915
40 H 0.039 0.961
41 H 0.062 0.938
42 H 0.065 0.935
43 H 0.014 0.986
44 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.481 -17.569 -5.022 21.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.147 4.147
3 Si 0.725 3.275
4 H -0.196 1.196
5 H -0.211 1.211
6 H -0.210 1.210
7 C -0.543 4.543
8 H 0.082 0.918
9 C 0.067 3.933
10 N -0.261 5.261
11 C -0.072 4.072
12 C -0.146 4.146
13 C -0.102 4.102
14 C -0.064 4.064
15 N -0.257 5.257
16 C -0.113 4.113
17 C -0.014 4.014
18 O -0.308 6.308
19 C -0.013 4.013
20 C -0.110 4.110
21 C -0.137 4.137
22 C -0.065 4.065
23 H 0.070 0.930
24 H 0.007 0.993
25 H 0.047 0.953
26 H 0.036 0.964
27 H 0.084 0.916
28 H 0.072 0.928
29 H 0.087 0.913
30 H 0.081 0.919
31 H 0.049 0.951
32 H 0.095 0.905
33 H 0.057 0.943
34 H 0.109 0.891
35 H 0.079 0.921
36 H 0.114 0.886
37 H 0.079 0.921
38 H 0.113 0.887
39 H 0.104 0.896
40 H 0.057 0.943
41 H 0.081 0.919
42 H 0.084 0.916
43 H 0.033 0.967
44 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 10.854 -17.074 -4.892 20.815
hybrid contribution -0.684 0.265 -0.140 0.747
sum 10.170 -16.809 -5.031 20.280
Atomic orbital electron populations
1.69976 1.06075 1.26578 1.51349 1.24999 0.94854 0.99313 0.95546
0.86456 0.80121 0.83484 0.77465 1.19633 1.21149 1.21048 1.21221
0.93541 0.89955 1.49580 0.91797 1.19705 0.90128 0.87539 0.95916
1.62036 1.27685 1.02489 1.33910 1.21959 0.94728 0.90674 0.99794
1.21593 0.97929 0.97539 0.97566 1.21223 0.95543 0.95370 0.98028
1.22223 0.96210 0.97606 0.90397 1.62183 1.07378 1.48322 1.07863
1.22834 0.96803 0.98846 0.92797 1.22678 0.86582 0.96012 0.96086
1.87964 1.33614 1.51657 1.57531 1.22653 0.92127 0.99926 0.86619
1.22766 0.93557 0.95933 0.98790 1.21541 0.97721 0.92799 1.01628
1.21965 0.95001 0.99159 0.90337 0.93046 0.99344 0.95334 0.96403
0.91562 0.92807 0.91317 0.91888 0.95131 0.90514 0.94257 0.89102
0.92065 0.88600 0.92143 0.88685 0.89616 0.94279 0.91880 0.91637
0.96736 0.90052
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16
2 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16
3 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16
4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16
5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
7 C -0.50 -14.34 8.43 -34.44 -0.29 -14.63 16
8 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16
9 C 0.19 5.11 4.72 -4.98 -0.02 5.08 16
10 N -0.54 -11.74 4.65 -236.11 -1.10 -12.84 16
11 C 0.06 1.05 5.46 -3.83 -0.02 1.03 16
12 C -0.11 -1.56 5.38 -26.65 -0.14 -1.70 16
13 C -0.08 -1.12 2.18 -90.50 -0.20 -1.32 16
14 C 0.06 0.72 4.35 -3.82 -0.02 0.70 16
15 N -0.53 -5.88 4.25 -234.31 -0.99 -6.87 16
16 C 0.02 0.16 5.44 -3.71 -0.02 0.14 16
17 C 0.06 0.62 7.01 37.21 0.26 0.88 16
18 O -0.39 -4.30 10.83 -35.23 -0.38 -4.68 16
19 C 0.06 0.58 7.01 37.20 0.26 0.84 16
20 C 0.02 0.17 5.64 -3.72 -0.02 0.15 16
21 C -0.10 -1.55 5.24 -26.65 -0.14 -1.69 16
22 C 0.06 1.26 5.29 -3.83 -0.02 1.24 16
23 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
24 H -0.01 -0.32 8.12 -51.92 -0.42 -0.74 16
25 H 0.03 0.81 7.99 -51.93 -0.41 0.39 16
26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16
27 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16
28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16
30 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16
31 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16
32 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16
33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.09 0.97 6.29 -51.93 -0.33 0.64 16
35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16
36 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
38 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16
40 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16
41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
42 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16
43 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
44 H 0.08 1.77 6.70 -51.93 -0.35 1.42 16
LS Contribution 335.97 15.07 5.06 5.06
Total: -1.00 -30.60 335.97 -10.24 -40.84
By element:
Atomic # 1 Polarization: 3.91 SS G_CDS: -8.08 Total: -4.17 kcal
Atomic # 6 Polarization: -7.37 SS G_CDS: -0.47 Total: -7.84 kcal
Atomic # 7 Polarization: -44.66 SS G_CDS: -1.36 Total: -46.02 kcal
Atomic # 8 Polarization: -4.30 SS G_CDS: -0.38 Total: -4.68 kcal
Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal
Total LS contribution 5.06 Total: 5.06 kcal
Total: -30.60 -10.24 -40.84 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051958547.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.947 kcal
(2) G-P(sol) polarization free energy of solvation -30.598 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.789 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.52 seconds