Wall clock time and date at job start Mon Mar 30 2020 01:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86802 * 120.00402 * 2 1 4 4 H 1.48491 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46854 * 299.99890 * 3 2 1 6 6 H 1.48496 * 109.46945 * 59.99401 * 3 2 1 7 7 C 1.37881 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99835 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00066 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47020 * 179.97438 * 9 7 2 11 11 C 1.46848 * 110.99689 * 170.00242 * 10 9 7 12 12 C 1.53039 * 109.52102 * 185.83603 * 11 10 9 13 13 C 1.53116 * 109.28151 * 300.81855 * 12 11 10 14 14 C 1.53000 * 109.52285 * 177.55754 * 13 12 11 15 15 N 1.46906 * 109.47072 * 175.00311 * 14 13 12 16 16 C 1.47020 * 110.99867 * 293.63551 * 15 14 13 17 17 C 1.53097 * 109.25663 * 177.60414 * 16 15 14 18 18 O 1.43021 * 109.25605 * 56.85187 * 17 16 15 19 19 C 1.43021 * 113.73613 * 301.32802 * 18 17 16 20 20 C 1.47009 * 111.00252 * 170.00094 * 15 14 13 21 21 C 1.53124 * 109.15991 * 57.65503 * 13 12 11 22 22 C 1.46854 * 110.99948 * 294.20649 * 10 9 7 23 23 H 0.97002 * 119.99386 * 0.02562 * 1 2 3 24 24 H 1.09010 * 109.47005 * 60.00096 * 9 7 2 25 25 H 1.08999 * 109.47079 * 300.00161 * 9 7 2 26 26 H 1.08998 * 109.46362 * 65.82525 * 11 10 9 27 27 H 1.08994 * 109.45518 * 305.84702 * 11 10 9 28 28 H 1.08999 * 109.50197 * 180.88070 * 12 11 10 29 29 H 1.08998 * 109.53470 * 60.78379 * 12 11 10 30 30 H 1.08999 * 109.52717 * 297.68954 * 13 12 11 31 31 H 1.08993 * 109.47007 * 55.00361 * 14 13 12 32 32 H 1.08996 * 109.47340 * 295.00167 * 14 13 12 33 33 H 1.08998 * 109.50492 * 297.54142 * 16 15 14 34 34 H 1.09007 * 109.50106 * 57.67293 * 16 15 14 35 35 H 1.08995 * 109.50808 * 296.91455 * 17 16 15 36 36 H 1.08995 * 109.54142 * 176.80219 * 17 16 15 37 37 H 1.08995 * 109.50535 * 298.73468 * 19 18 17 38 38 H 1.09001 * 109.53535 * 178.62697 * 19 18 17 39 39 H 1.08999 * 109.50465 * 302.33238 * 20 15 14 40 40 H 1.08998 * 109.50618 * 62.41050 * 20 15 14 41 41 H 1.09000 * 109.50292 * 62.28455 * 21 13 12 42 42 H 1.08998 * 109.50635 * 182.40159 * 21 13 12 43 43 H 1.08995 * 109.46301 * 294.18371 * 22 10 9 44 44 H 1.09000 * 109.45863 * 54.15862 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 1.5214 -4.8930 0.2385 12 6 2.5578 -6.0105 0.3766 13 6 3.3916 -6.0879 -0.9053 14 6 4.4694 -7.1627 -0.7500 15 7 5.1910 -7.3196 -2.0200 16 6 4.3098 -7.8654 -3.0627 17 6 5.0833 -7.9562 -4.3808 18 8 6.2529 -8.7562 -4.1871 19 6 7.1339 -8.2533 -3.1789 20 6 6.3812 -8.1654 -1.8488 21 6 4.0548 -4.7308 -1.1562 22 6 2.9749 -3.6504 -1.2499 23 1 -0.4849 0.8401 -0.0004 24 1 0.6247 -2.5571 -0.8898 25 1 0.6240 -2.5567 0.8903 26 1 0.8602 -5.1126 -0.5997 27 1 0.9356 -4.8258 1.1552 28 1 2.0490 -6.9609 0.5377 29 1 3.2109 -5.7993 1.2233 30 1 2.7449 -6.3393 -1.7459 31 1 4.0022 -8.1092 -0.4783 32 1 5.1692 -6.8654 0.0310 33 1 3.9717 -8.8593 -2.7698 34 1 3.4482 -7.2100 -3.1906 35 1 5.3752 -6.9561 -4.7011 36 1 4.4522 -8.4129 -5.1431 37 1 7.4855 -7.2618 -3.4644 38 1 7.9859 -8.9246 -3.0714 39 1 7.0316 -7.7292 -1.0906 40 1 6.0762 -9.1639 -1.5357 41 1 4.7313 -4.4987 -0.3337 42 1 4.6155 -4.7668 -2.0902 43 1 2.3068 -3.8757 -2.0812 44 1 3.4448 -2.6807 -1.4142 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051958547.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:32 Heat of formation + Delta-G solvation = -68.039135 kcal Electronic energy + Delta-G solvation = -21308.950490 eV Core-core repulsion = 18259.703596 eV Total energy + Delta-G solvation = -3049.246894 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75778 -39.68451 -37.13003 -35.26949 -33.81522 -32.10790 -31.67062 -29.99810 -28.27548 -26.04288 -24.99701 -24.13746 -23.63207 -22.15704 -21.26985 -20.41886 -18.46553 -17.48465 -17.14480 -16.94120 -16.27966 -16.05164 -15.95823 -15.76334 -15.61741 -15.13229 -15.11514 -14.72435 -14.18870 -13.93114 -13.69169 -13.38342 -13.23755 -12.91937 -12.84011 -12.69148 -12.48035 -12.33313 -12.19625 -12.08361 -11.98049 -11.58715 -11.55605 -11.26480 -11.09850 -10.97598 -10.62206 -10.58905 -9.31136 -8.98250 -8.21222 -6.31443 1.40498 1.41088 1.55170 2.40164 2.76704 2.99027 3.10962 3.34478 3.77485 3.92001 3.98343 3.99593 4.07678 4.22319 4.28464 4.34324 4.40361 4.48521 4.51863 4.61208 4.66228 4.69998 4.75150 4.79571 4.84977 4.89591 4.94041 4.99747 5.04130 5.05715 5.11228 5.21991 5.24275 5.36482 5.39632 5.56479 5.66247 6.00752 6.04383 6.06473 6.20036 6.38491 6.69310 6.85719 7.38552 8.90318 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.029806 B = 0.003735 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.177713 B = 7495.652746 C = 7905.568164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.206 3.794 10 N -0.542 5.542 11 C 0.053 3.947 12 C -0.098 4.098 13 C -0.076 4.076 14 C 0.073 3.927 15 N -0.545 5.545 16 C 0.017 3.983 17 C 0.063 3.937 18 O -0.405 6.405 19 C 0.061 3.939 20 C 0.020 3.980 21 C -0.084 4.084 22 C 0.065 3.935 23 H 0.264 0.736 24 H -0.043 1.043 25 H 0.002 0.998 26 H 0.014 0.986 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.086 0.914 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.058 0.942 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.059 0.941 42 H 0.076 0.924 43 H 0.006 0.994 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.268 -18.579 -5.011 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.198 4.198 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.267 5.267 11 C -0.076 4.076 12 C -0.136 4.136 13 C -0.095 4.095 14 C -0.055 4.055 15 N -0.270 5.270 16 C -0.111 4.111 17 C -0.014 4.014 18 O -0.324 6.324 19 C -0.016 4.016 20 C -0.108 4.108 21 C -0.121 4.121 22 C -0.063 4.063 23 H 0.073 0.927 24 H -0.025 1.025 25 H 0.020 0.980 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.128 0.872 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.058 0.942 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.025 0.975 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 12.657 -18.110 -4.882 22.628 hybrid contribution -1.277 0.548 -0.161 1.399 sum 11.380 -17.562 -5.043 21.526 Atomic orbital electron populations 1.70102 1.07793 1.27844 1.51949 1.25947 0.95762 1.03294 0.94777 0.85310 0.78973 0.78427 0.77775 1.18673 1.20352 1.20277 1.21497 0.93592 0.91079 1.49838 0.91937 1.19368 0.90200 0.89341 0.93089 1.61989 1.26806 1.02872 1.35037 1.22098 0.95937 0.90247 0.99276 1.21529 0.97026 0.96954 0.98065 1.21139 0.96068 0.94785 0.97508 1.22058 0.95577 0.97015 0.90836 1.62165 1.07910 1.49212 1.07712 1.22816 0.96673 0.98644 0.92968 1.22740 0.86524 0.95910 0.96208 1.87946 1.34101 1.52207 1.58178 1.22798 0.92375 1.00358 0.86023 1.22804 0.93012 0.95740 0.99285 1.21398 0.96146 0.92527 1.02065 1.21976 0.95572 0.99620 0.89138 0.92681 1.02542 0.97974 0.96809 0.92125 0.89893 0.91191 0.91889 0.94008 0.90019 0.94216 0.89554 0.92504 0.87162 0.92406 0.86692 0.88499 0.94195 0.92194 0.90560 0.97541 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.01 5.46 84.66 0.46 0.46 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 7 C -0.52 -30.44 8.43 25.60 0.22 -30.23 16 8 H 0.06 3.59 7.12 -2.91 -0.02 3.57 16 9 C 0.21 11.47 4.72 85.56 0.40 11.87 16 10 N -0.54 -24.28 4.65 -900.91 -4.19 -28.47 16 11 C 0.05 1.93 5.46 86.33 0.47 2.40 16 12 C -0.10 -2.62 5.38 30.65 0.16 -2.46 16 13 C -0.08 -1.90 2.18 -10.71 -0.02 -1.93 16 14 C 0.07 1.45 4.35 86.30 0.38 1.82 16 15 N -0.54 -10.67 4.25 -895.23 -3.80 -14.48 16 16 C 0.02 0.32 5.44 86.31 0.47 0.79 16 17 C 0.06 1.12 7.01 72.01 0.50 1.63 16 18 O -0.41 -8.18 10.83 -148.98 -1.61 -9.79 16 19 C 0.06 0.97 7.01 72.01 0.50 1.47 16 20 C 0.02 0.32 5.64 86.31 0.49 0.80 16 21 C -0.08 -2.52 5.24 30.65 0.16 -2.36 16 22 C 0.07 2.62 5.29 86.32 0.46 3.08 16 23 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 24 H -0.04 -2.61 8.12 -2.38 -0.02 -2.63 16 25 H 0.00 0.13 7.99 -2.39 -0.02 0.11 16 26 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 2.25 8.02 -2.39 -0.02 2.24 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.62 6.30 -2.39 -0.02 1.60 16 31 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 32 H 0.08 1.58 8.04 -2.39 -0.02 1.56 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.69 6.29 -2.38 -0.01 1.67 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.35 8.09 -2.39 -0.02 1.33 16 40 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.08 2.16 7.84 -2.39 -0.02 2.14 16 43 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.06 2.51 6.70 -2.39 -0.02 2.49 16 Total: -1.00 -66.75 335.97 -1.70 -68.45 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.94 Total: 7.11 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.65 Total: -12.65 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -7.70 Total: -100.16 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: -1.61 Total: -9.79 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -66.75 -1.70 -68.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051958547.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.414 kcal (2) G-P(sol) polarization free energy of solvation -66.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds