Wall clock time and date at job start Mon Mar 30 2020 01:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46604 * 2 1 4 4 C 1.50700 * 109.46944 * 240.00231 * 2 1 3 5 5 O 1.21273 * 119.99885 * 267.27500 * 4 2 1 6 6 N 1.34775 * 119.99846 * 87.27394 * 4 2 1 7 7 C 1.46496 * 120.00282 * 353.38877 * 6 4 2 8 8 C 1.46505 * 119.99811 * 173.38194 * 6 4 2 9 9 C 1.50703 * 109.46871 * 90.00075 * 8 6 4 10 10 H 1.07998 * 119.99863 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99974 * 179.97438 * 9 8 6 12 12 N 1.31514 * 120.00252 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99979 * 0.02562 * 11 9 8 14 14 H 1.48504 * 109.46890 * 89.99751 * 13 11 9 15 15 H 1.48493 * 109.46925 * 209.99590 * 13 11 9 16 16 H 1.48500 * 109.47099 * 329.99608 * 13 11 9 17 17 N 1.46897 * 109.47261 * 120.00101 * 2 1 3 18 18 C 1.46844 * 111.00219 * 48.02706 * 17 2 1 19 19 C 1.53035 * 109.52747 * 174.15950 * 18 17 2 20 20 C 1.53123 * 109.27732 * 59.17648 * 19 18 17 21 21 C 1.52996 * 109.52197 * 182.44068 * 20 19 18 22 22 C 1.53120 * 109.16306 * 302.34948 * 20 19 18 23 23 C 1.46851 * 110.99979 * 283.81600 * 17 2 1 24 24 H 1.09002 * 109.47568 * 52.49813 * 1 2 3 25 25 H 1.09003 * 109.47217 * 172.50499 * 1 2 3 26 26 H 1.09008 * 109.46898 * 292.50080 * 1 2 3 27 27 H 1.08997 * 109.47291 * 84.49174 * 7 6 4 28 28 H 1.09004 * 109.47119 * 204.49755 * 7 6 4 29 29 H 1.09000 * 109.47154 * 324.48796 * 7 6 4 30 30 H 1.09000 * 109.47009 * 209.99990 * 8 6 4 31 31 H 1.09005 * 109.47226 * 330.00384 * 8 6 4 32 32 H 0.97000 * 120.00065 * 180.02562 * 12 11 9 33 33 H 1.09004 * 109.46256 * 54.14004 * 18 17 2 34 34 H 1.09000 * 109.46130 * 294.18029 * 18 17 2 35 35 H 1.08997 * 109.50190 * 299.24035 * 19 18 17 36 36 H 1.08997 * 109.50519 * 179.11796 * 19 18 17 37 37 H 1.09003 * 109.51662 * 62.25231 * 20 19 18 38 38 H 1.08997 * 109.46949 * 60.00897 * 21 20 19 39 39 H 1.09003 * 109.47092 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47299 * 300.00323 * 21 20 19 41 41 H 1.08997 * 109.50541 * 177.59030 * 22 20 19 42 42 H 1.09001 * 109.50038 * 297.71522 * 22 20 19 43 43 H 1.09000 * 109.46179 * 65.82754 * 23 17 2 44 44 H 1.08996 * 109.46133 * 305.85797 * 23 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2815 -1.8964 -1.1867 6 7 2.2045 -0.0275 -2.3796 7 6 1.7686 1.3678 -2.4750 8 6 2.8279 -0.6807 -3.5334 9 6 1.7634 -1.3347 -4.3761 10 1 0.7263 -1.2699 -4.0819 11 6 2.1134 -2.0149 -5.5232 12 7 1.1846 -2.5861 -6.2584 13 14 3.9073 -2.1263 -6.0324 14 1 4.5198 -3.3356 -5.4259 15 1 3.9972 -2.2150 -7.5119 16 1 4.6308 -0.9170 -5.5640 17 7 2.0197 -0.6925 1.1994 18 6 1.3307 -1.9761 1.3842 19 6 1.9644 -2.7331 2.5535 20 6 1.8535 -1.8854 3.8239 21 6 2.5392 -2.6104 4.9837 22 6 2.5368 -0.5355 3.5887 23 6 1.8865 0.1578 2.3893 24 1 -0.3634 0.6256 -0.8153 25 1 -0.3634 -1.0189 -0.1341 26 1 -0.3633 0.3933 0.9495 27 1 2.5492 2.0199 -2.0834 28 1 1.5758 1.6177 -3.5184 29 1 0.8562 1.5039 -1.8944 30 1 3.3575 0.0626 -4.1294 31 1 3.5321 -1.4369 -3.1862 32 1 1.4309 -3.0649 -7.0652 33 1 1.4208 -2.5707 0.4751 34 1 0.2771 -1.7954 1.5968 35 1 3.0148 -2.9262 2.3355 36 1 1.4427 -3.6787 2.7003 37 1 0.8025 -1.7248 4.0639 38 1 3.5906 -2.7675 4.7431 39 1 2.4602 -2.0061 5.8875 40 1 2.0558 -3.5736 5.1468 41 1 2.4240 0.0889 4.4750 42 1 3.5962 -0.6941 3.3869 43 1 0.8302 0.3284 2.5973 44 1 2.3801 1.1129 2.2102 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052873175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:55 Heat of formation + Delta-G solvation = -58.791047 kcal Electronic energy + Delta-G solvation = -21787.853252 eV Core-core repulsion = 18739.007385 eV Total energy + Delta-G solvation = -3048.845867 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34851 -39.55594 -36.64194 -36.05482 -34.67396 -32.01603 -31.68172 -30.19238 -28.15428 -27.43242 -25.72479 -24.14567 -23.86104 -22.28707 -20.40120 -19.83341 -19.12941 -17.94229 -17.38512 -16.55248 -16.28005 -15.81066 -15.69709 -15.46993 -15.32320 -14.96389 -14.55662 -14.27667 -14.14913 -13.70299 -13.67442 -13.42656 -13.35166 -13.20766 -13.08298 -12.82501 -12.66131 -12.46579 -12.38080 -12.34632 -12.02893 -11.89801 -11.74689 -11.56843 -11.26861 -11.11847 -10.83281 -10.30689 -9.35980 -9.14804 -8.34077 -6.38683 1.31889 1.36367 1.44733 1.82286 2.24152 2.30866 3.00400 3.07447 3.64723 3.85020 3.92440 3.93259 4.08040 4.11256 4.34631 4.36931 4.40499 4.53460 4.60894 4.63718 4.67958 4.73395 4.78916 4.82732 4.83570 4.89984 4.93334 4.96387 5.01270 5.09929 5.16277 5.19419 5.29342 5.30984 5.38515 5.46262 5.57850 5.67075 6.05740 6.24710 6.27572 6.62195 6.75778 7.22510 7.49560 8.83085 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.028366 B = 0.004631 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.854675 B = 6044.385997 C = 6414.686940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 H 0.128 0.872 4 C 0.505 3.495 5 O -0.579 6.579 6 N -0.610 5.610 7 C 0.075 3.925 8 C 0.226 3.774 9 C -0.533 4.533 10 H 0.026 0.974 11 C 0.010 3.990 12 N -0.947 5.947 13 Si 0.949 3.051 14 H -0.278 1.278 15 H -0.274 1.274 16 H -0.237 1.237 17 N -0.534 5.534 18 C 0.048 3.952 19 C -0.106 4.106 20 C -0.090 4.090 21 C -0.142 4.142 22 C -0.106 4.106 23 C 0.053 3.947 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.014 0.986 32 H 0.268 0.732 33 H 0.061 0.939 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 10.349 21.155 23.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.035 4.035 3 H 0.145 0.855 4 C 0.293 3.707 5 O -0.458 6.458 6 N -0.342 5.342 7 C -0.067 4.067 8 C 0.104 3.896 9 C -0.571 4.571 10 H 0.045 0.955 11 C -0.188 4.188 12 N -0.587 5.587 13 Si 0.771 3.229 14 H -0.204 1.204 15 H -0.199 1.199 16 H -0.160 1.160 17 N -0.259 5.259 18 C -0.080 4.080 19 C -0.144 4.144 20 C -0.109 4.109 21 C -0.199 4.199 22 C -0.144 4.144 23 C -0.074 4.074 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.318 9.568 20.948 23.146 hybrid contribution -0.530 -0.662 -0.997 1.309 sum 1.787 8.907 19.951 21.922 Atomic orbital electron populations 1.22309 0.94160 1.02210 1.04284 1.21597 0.95019 0.98733 0.88106 0.85468 1.21224 0.77353 0.87010 0.85074 1.90561 1.52576 1.17538 1.85121 1.47950 1.60201 1.14116 1.11907 1.22017 1.00842 0.80095 1.03756 1.19310 0.92808 0.93286 0.84242 1.21559 0.93849 1.34058 1.07668 0.95545 1.25864 1.02677 0.94156 0.96096 1.70054 1.35592 1.36553 1.16514 0.85705 0.79299 0.80115 0.77757 1.20402 1.19888 1.16034 1.61753 1.57489 1.04325 1.02361 1.22244 0.95139 0.91048 0.99556 1.21600 1.00581 0.98147 0.94076 1.21185 1.00159 0.95313 0.94247 1.21771 1.00217 1.00303 0.97589 1.21637 0.99786 0.95843 0.97144 1.22266 0.99859 0.96226 0.89062 0.90563 0.94239 0.88818 0.89985 0.91197 0.89865 0.93125 0.96812 0.92311 0.92083 0.94580 0.93092 0.91617 0.90981 0.93204 0.91294 0.92682 0.89140 0.92286 0.93645 0.89297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.37 7.96 71.98 0.57 -3.80 16 2 C 0.08 2.24 1.89 44.17 0.08 2.32 16 3 H 0.13 2.85 6.89 -2.39 -0.02 2.83 16 4 C 0.51 21.14 6.80 87.66 0.60 21.74 16 5 O -0.58 -30.19 13.73 -3.01 -0.04 -30.23 16 6 N -0.61 -25.29 2.86 -851.13 -2.43 -27.72 16 7 C 0.07 2.14 9.60 127.77 1.23 3.36 16 8 C 0.23 11.30 4.16 85.63 0.36 11.65 16 9 C -0.53 -32.08 9.94 25.60 0.25 -31.83 16 10 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 11 C 0.01 0.59 5.47 84.65 0.46 1.05 16 12 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 13 Si 0.95 45.40 27.47 68.60 1.88 47.28 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.24 -10.17 6.54 99.48 0.65 -9.52 16 17 N -0.53 -15.15 4.46 -875.51 -3.90 -19.05 16 18 C 0.05 1.47 4.25 86.33 0.37 1.84 16 19 C -0.11 -2.73 5.38 30.65 0.16 -2.56 16 20 C -0.09 -1.69 2.79 -10.71 -0.03 -1.72 16 21 C -0.14 -2.21 9.20 71.98 0.66 -1.55 16 22 C -0.11 -1.85 5.38 30.65 0.16 -1.69 16 23 C 0.05 1.02 5.22 86.33 0.45 1.47 16 24 H 0.08 1.82 6.40 -2.39 -0.02 1.81 16 25 H 0.04 1.24 6.92 -2.39 -0.02 1.22 16 26 H 0.09 1.80 6.85 -2.38 -0.02 1.78 16 27 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 29 H 0.08 1.95 5.40 -2.39 -0.01 1.93 16 30 H 0.05 2.31 7.13 -2.39 -0.02 2.29 16 31 H 0.01 0.75 6.95 -2.38 -0.02 0.73 16 32 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 33 H 0.06 2.49 5.54 -2.38 -0.01 2.48 16 34 H 0.04 1.02 6.74 -2.39 -0.02 1.00 16 35 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 0.77 6.98 -2.39 -0.02 0.76 16 44 H 0.09 1.44 7.96 -2.39 -0.02 1.42 16 Total: -1.00 -78.10 332.70 2.04 -76.06 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.90 Total: 14.03 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.33 Total: 0.28 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -6.03 Total: -107.43 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.04 Total: -30.23 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.28 kcal Total: -78.10 2.04 -76.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052873175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.268 kcal (2) G-P(sol) polarization free energy of solvation -78.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds