Wall clock time and date at job start Mon Mar 30 2020 01:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47328 * 60.00126 * 4 3 2 6 6 N 1.46899 * 109.46973 * 179.97438 * 5 4 3 7 7 C 1.46903 * 111.00164 * 303.95247 * 6 5 4 8 8 C 1.46907 * 111.00102 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.47187 * 190.00060 * 8 6 5 10 10 O 1.21280 * 120.00115 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99954 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00180 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47198 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99823 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99987 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99950 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47502 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47214 * 119.99960 * 17 15 13 20 20 H 1.48494 * 109.47415 * 239.99662 * 17 15 13 21 21 C 1.53002 * 109.46891 * 299.99597 * 5 4 3 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 5 4 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 31 31 H 1.08992 * 109.47554 * 59.99639 * 5 4 3 32 32 H 1.08999 * 109.46910 * 59.99976 * 7 6 5 33 33 H 1.08998 * 109.47016 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.46799 * 300.00138 * 7 6 5 35 35 H 1.08996 * 109.46676 * 310.00213 * 8 6 5 36 36 H 1.09001 * 109.46551 * 69.99743 * 8 6 5 37 37 H 0.97001 * 119.99876 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46755 * 299.99782 * 12 11 9 39 39 H 1.08995 * 109.47039 * 59.99567 * 12 11 9 40 40 H 0.97004 * 120.00103 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47097 * 180.02562 * 21 5 4 42 42 H 1.09001 * 109.47142 * 300.00176 * 21 5 4 43 43 H 1.09001 * 109.47375 * 59.99908 * 22 21 5 44 44 H 1.09000 * 109.47140 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0795 0.7213 -1.2502 6 7 5.5485 0.7218 -1.2510 7 6 6.0746 2.0901 -1.1568 8 6 6.0745 0.0357 -2.4388 9 6 7.5609 -0.1612 -2.2881 10 8 8.1265 0.2317 -1.2898 11 7 8.2619 -0.7731 -3.2631 12 6 9.7070 -0.9640 -3.1169 13 6 10.2468 -1.6668 -4.3359 14 1 9.5799 -1.9439 -5.1389 15 6 11.5916 -1.9569 -4.4253 16 7 12.4036 -1.6199 -3.4472 17 14 12.2605 -2.8287 -5.9360 18 1 11.1504 -3.0962 -6.8853 19 1 13.2774 -1.9693 -6.5938 20 1 12.8858 -4.1130 -5.5301 21 6 3.5694 -0.7212 -1.2501 22 6 2.0395 -0.7212 -1.2496 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9334 2.4700 -0.0002 30 1 3.9337 0.9284 0.8891 31 1 3.7158 1.2352 -2.1399 32 1 5.7254 2.5507 -0.2326 33 1 7.1642 2.0614 -1.1599 34 1 5.7244 2.6734 -2.0083 35 1 5.5882 -0.9342 -2.5432 36 1 5.8758 0.6390 -3.3246 37 1 7.8097 -1.0863 -4.0621 38 1 10.1929 0.0061 -3.0124 39 1 9.9060 -1.5673 -2.2313 40 1 13.3497 -1.8244 -3.5100 41 1 3.9328 -1.2351 -2.1401 42 1 3.9331 -1.2352 -0.3603 43 1 1.6758 -0.2072 -2.1393 44 1 1.6761 -1.7488 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053098906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:57 Heat of formation + Delta-G solvation = -56.937317 kcal Electronic energy + Delta-G solvation = -20816.012640 eV Core-core repulsion = 17767.247157 eV Total energy + Delta-G solvation = -3048.765483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.78001 -38.51393 -36.01673 -34.08355 -32.31034 -31.52688 -31.17325 -28.56839 -26.77955 -26.40179 -23.76911 -22.62039 -22.18143 -20.54570 -19.81781 -19.53346 -17.17181 -16.27163 -15.60353 -15.27567 -15.17272 -14.66002 -14.42772 -14.34981 -14.30826 -13.87733 -13.42370 -13.07116 -12.98135 -12.57912 -12.52284 -12.30176 -11.97459 -11.87559 -11.49435 -11.35512 -11.24343 -11.15022 -11.07929 -10.93237 -10.83843 -10.73285 -10.36959 -10.29824 -9.98099 -9.35979 -8.93735 -8.71733 -8.12291 -7.81096 -6.15412 -4.22093 3.24002 3.30990 3.34048 3.44442 3.70550 4.27642 4.43623 4.48585 4.54615 4.72999 4.92276 4.99970 5.20672 5.25943 5.26806 5.32193 5.37161 5.37720 5.43679 5.45474 5.56679 5.61014 5.67394 5.70032 5.72055 5.79252 5.87226 5.97579 6.03563 6.09507 6.12090 6.14706 6.32361 6.40396 7.07899 7.23897 7.36533 7.49785 7.55054 7.70485 7.99222 8.67801 8.81935 9.17740 9.44939 10.94874 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040827 B = 0.003158 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.661335 B = 8865.387648 C = 9320.083130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.111 4.111 4 C -0.114 4.114 5 C 0.087 3.913 6 N -0.518 5.518 7 C 0.018 3.982 8 C 0.031 3.969 9 C 0.499 3.501 10 O -0.539 6.539 11 N -0.716 5.716 12 C 0.251 3.749 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.063 3.937 16 N -0.885 5.885 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.015 0.985 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.389 0.611 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.265 0.735 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.823 4.476 3.581 23.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 C -0.149 4.149 4 C -0.151 4.151 5 C -0.022 4.022 6 N -0.242 5.242 7 C -0.130 4.130 8 C -0.100 4.100 9 C 0.283 3.717 10 O -0.417 6.417 11 N -0.365 5.365 12 C 0.130 3.870 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.141 4.141 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.155 4.155 22 C -0.149 4.149 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.033 0.967 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.221 0.779 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.016 4.495 4.773 22.972 hybrid contribution 0.023 -0.196 -1.961 1.971 sum -21.993 4.300 2.812 22.585 Atomic orbital electron populations 1.21832 0.95498 1.01559 1.01565 1.21165 0.95111 0.96242 0.98734 1.21578 0.95349 0.96289 1.01706 1.21633 0.94770 1.00464 0.98281 1.21654 0.86989 0.96271 0.97243 1.61647 1.06138 1.17796 1.38649 1.22590 1.03167 0.87495 0.99723 1.22094 0.94708 1.00853 0.92368 1.20315 0.88404 0.79119 0.83871 1.90620 1.71344 1.50134 1.29566 1.46454 1.11733 1.58343 1.20013 1.19074 0.73523 0.96988 0.97377 1.21271 0.93656 1.39424 1.03665 0.91895 1.24958 0.96723 0.95670 0.96735 1.69987 1.04463 1.46101 1.31753 0.86367 0.78981 0.79256 0.82336 1.19650 1.20825 1.20791 1.21672 0.94864 0.96030 1.02900 1.21575 0.95311 1.00323 0.97722 0.92857 0.92793 0.92846 0.91045 0.91920 0.92229 0.91733 0.90900 0.94551 0.91410 0.89031 0.96651 0.88147 0.92724 0.77895 0.95679 0.95560 0.92520 0.91748 0.90801 0.92189 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.19 37.15 0.34 -0.65 16 2 C -0.09 -0.75 2.72 -90.62 -0.25 -0.99 16 3 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 4 C -0.11 -1.15 4.84 -26.73 -0.13 -1.28 16 5 C 0.09 0.99 1.94 -67.71 -0.13 0.86 16 6 N -0.52 -7.60 4.37 -236.34 -1.03 -8.63 16 7 C 0.02 0.26 8.75 60.07 0.53 0.79 16 8 C 0.03 0.46 5.26 -4.97 -0.03 0.44 16 9 C 0.50 10.12 7.52 -10.99 -0.08 10.03 16 10 O -0.54 -13.08 14.33 5.56 0.08 -13.00 16 11 N -0.72 -15.24 5.55 -61.48 -0.34 -15.58 16 12 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 13 C -0.54 -14.80 9.28 -34.44 -0.32 -15.12 16 14 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 17 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.12 -1.21 5.00 -26.73 -0.13 -1.35 16 22 C -0.11 -0.94 5.20 -26.73 -0.14 -1.07 16 23 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.88 6.23 -51.93 -0.32 0.55 16 33 H 0.09 1.64 5.82 -51.93 -0.30 1.33 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.10 1.32 5.83 -51.93 -0.30 1.02 16 36 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 37 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.06 0.66 6.20 -51.93 -0.32 0.34 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 340.96 15.07 5.14 5.14 Total: -1.00 -31.54 340.96 -8.84 -40.38 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.79 Total: 2.39 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.61 Total: -1.06 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.64 Total: -49.77 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.08 Total: -13.00 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.54 -8.84 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053098906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.561 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds