Wall clock time and date at job start Mon Mar 30 2020 01:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47328 * 60.00126 * 4 3 2 6 6 N 1.46899 * 109.46973 * 179.97438 * 5 4 3 7 7 C 1.46903 * 111.00164 * 303.95247 * 6 5 4 8 8 C 1.46907 * 111.00102 * 179.97438 * 6 5 4 9 9 C 1.50694 * 109.47187 * 190.00060 * 8 6 5 10 10 O 1.21280 * 120.00115 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99954 * 180.02562 * 9 8 6 12 12 C 1.46498 * 120.00180 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47198 * 180.02562 * 12 11 9 14 14 H 1.08000 * 119.99823 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99987 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00116 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99950 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47502 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47214 * 119.99960 * 17 15 13 20 20 H 1.48494 * 109.47415 * 239.99662 * 17 15 13 21 21 C 1.53002 * 109.46891 * 299.99597 * 5 4 3 22 22 C 1.52997 * 109.46978 * 60.00410 * 21 5 4 23 23 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 24 24 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 26 26 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 27 27 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 28 28 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 29 29 H 1.09004 * 109.46724 * 180.02562 * 4 3 2 30 30 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 31 31 H 1.08992 * 109.47554 * 59.99639 * 5 4 3 32 32 H 1.08999 * 109.46910 * 59.99976 * 7 6 5 33 33 H 1.08998 * 109.47016 * 180.02562 * 7 6 5 34 34 H 1.08995 * 109.46799 * 300.00138 * 7 6 5 35 35 H 1.08996 * 109.46676 * 310.00213 * 8 6 5 36 36 H 1.09001 * 109.46551 * 69.99743 * 8 6 5 37 37 H 0.97001 * 119.99876 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46755 * 299.99782 * 12 11 9 39 39 H 1.08995 * 109.47039 * 59.99567 * 12 11 9 40 40 H 0.97004 * 120.00103 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.47097 * 180.02562 * 21 5 4 42 42 H 1.09001 * 109.47142 * 300.00176 * 21 5 4 43 43 H 1.09001 * 109.47375 * 59.99908 * 22 21 5 44 44 H 1.09000 * 109.47140 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0795 0.7213 -1.2502 6 7 5.5485 0.7218 -1.2510 7 6 6.0746 2.0901 -1.1568 8 6 6.0745 0.0357 -2.4388 9 6 7.5609 -0.1612 -2.2881 10 8 8.1265 0.2317 -1.2898 11 7 8.2619 -0.7731 -3.2631 12 6 9.7070 -0.9640 -3.1169 13 6 10.2468 -1.6668 -4.3359 14 1 9.5799 -1.9439 -5.1389 15 6 11.5916 -1.9569 -4.4253 16 7 12.4036 -1.6199 -3.4472 17 14 12.2605 -2.8287 -5.9360 18 1 11.1504 -3.0962 -6.8853 19 1 13.2774 -1.9693 -6.5938 20 1 12.8858 -4.1130 -5.5301 21 6 3.5694 -0.7212 -1.2501 22 6 2.0395 -0.7212 -1.2496 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8932 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9334 2.4700 -0.0002 30 1 3.9337 0.9284 0.8891 31 1 3.7158 1.2352 -2.1399 32 1 5.7254 2.5507 -0.2326 33 1 7.1642 2.0614 -1.1599 34 1 5.7244 2.6734 -2.0083 35 1 5.5882 -0.9342 -2.5432 36 1 5.8758 0.6390 -3.3246 37 1 7.8097 -1.0863 -4.0621 38 1 10.1929 0.0061 -3.0124 39 1 9.9060 -1.5673 -2.2313 40 1 13.3497 -1.8244 -3.5100 41 1 3.9328 -1.2351 -2.1401 42 1 3.9331 -1.2352 -0.3603 43 1 1.6758 -0.2072 -2.1393 44 1 1.6761 -1.7488 -1.2500 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053098906.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:57 Heat of formation + Delta-G solvation = -78.610808 kcal Electronic energy + Delta-G solvation = -20816.952473 eV Core-core repulsion = 17767.247157 eV Total energy + Delta-G solvation = -3049.705317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97554 -39.82655 -37.08523 -36.02290 -34.34287 -32.37560 -31.96037 -30.15494 -28.37175 -27.32560 -25.14731 -23.94124 -23.31485 -21.54083 -21.10549 -20.59460 -18.94247 -17.75709 -17.19427 -16.81455 -16.28348 -16.22464 -15.80599 -15.35184 -15.05839 -15.01305 -14.83151 -14.31537 -14.11476 -13.87565 -13.77411 -13.50182 -13.30978 -13.10762 -12.87378 -12.77714 -12.42707 -12.34727 -12.21978 -12.15166 -11.91541 -11.90221 -11.45749 -11.43205 -11.09026 -10.81383 -10.74117 -10.61754 -9.79793 -9.22626 -8.29367 -6.45984 1.42949 1.44205 1.57710 1.80762 2.27391 2.46467 3.05521 3.07534 3.72399 3.80611 3.92405 4.08283 4.17107 4.23598 4.32296 4.33462 4.47242 4.51940 4.59197 4.64070 4.65522 4.68656 4.87408 4.97528 5.00746 5.05259 5.07614 5.12005 5.18778 5.24741 5.27637 5.32709 5.36622 5.45315 5.45694 5.50381 5.64986 5.71138 5.85389 5.99801 6.21651 6.65747 6.96293 7.23819 7.54696 8.83168 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040827 B = 0.003158 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.661335 B = 8865.387648 C = 9320.083130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.105 4.105 4 C -0.112 4.112 5 C 0.089 3.911 6 N -0.540 5.540 7 C 0.023 3.977 8 C 0.046 3.954 9 C 0.494 3.506 10 O -0.584 6.584 11 N -0.711 5.711 12 C 0.269 3.731 13 C -0.554 4.554 14 H 0.084 0.916 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.986 3.014 18 H -0.252 1.252 19 H -0.279 1.279 20 H -0.279 1.279 21 C -0.116 4.116 22 C -0.106 4.106 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.052 0.948 34 H 0.032 0.968 35 H 0.125 0.875 36 H 0.082 0.918 37 H 0.407 0.593 38 H -0.015 1.015 39 H -0.015 1.015 40 H 0.268 0.732 41 H 0.067 0.933 42 H 0.056 0.944 43 H 0.068 0.932 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.343 4.003 1.588 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.143 4.143 4 C -0.150 4.150 5 C -0.018 4.018 6 N -0.265 5.265 7 C -0.124 4.124 8 C -0.085 4.085 9 C 0.281 3.719 10 O -0.464 6.464 11 N -0.361 5.361 12 C 0.146 3.854 13 C -0.592 4.592 14 H 0.102 0.898 15 C -0.198 4.198 16 N -0.571 5.571 17 Si 0.809 3.191 18 H -0.175 1.175 19 H -0.205 1.205 20 H -0.205 1.205 21 C -0.154 4.154 22 C -0.144 4.144 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.143 0.857 36 H 0.099 0.901 37 H 0.243 0.757 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.600 4.023 2.762 25.080 hybrid contribution 0.790 -0.005 -1.242 1.472 sum -23.811 4.018 1.520 24.195 Atomic orbital electron populations 1.21796 0.94307 1.01968 1.02044 1.21162 0.96064 0.95867 0.98204 1.21544 0.93608 0.96691 1.02496 1.21618 0.96294 1.00011 0.97050 1.21744 0.84622 0.97273 0.98205 1.61610 1.08356 1.17757 1.38786 1.22456 1.00683 0.88123 1.01184 1.22000 0.90058 1.02801 0.93642 1.21358 0.90702 0.77330 0.82510 1.90607 1.72882 1.51585 1.31371 1.46192 1.09672 1.58902 1.21379 1.18496 0.76699 0.94111 0.96125 1.21654 0.94379 1.39194 1.03956 0.89771 1.26090 0.97097 0.96296 1.00273 1.70151 1.05001 1.47516 1.34414 0.85098 0.78515 0.77590 0.77927 1.17539 1.20473 1.20460 1.21671 0.96406 0.95109 1.02203 1.21546 0.93601 1.01012 0.98245 0.92321 0.92459 0.92442 0.91955 0.91128 0.91420 0.91731 0.92483 0.93379 0.90178 0.92962 0.94948 0.85697 0.90063 0.75708 0.99665 0.99710 0.92269 0.91439 0.92492 0.91284 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 2 C -0.09 -1.30 2.72 -10.79 -0.03 -1.33 16 3 C -0.11 -1.49 5.20 30.59 0.16 -1.33 16 4 C -0.11 -2.11 4.84 30.59 0.15 -1.96 16 5 C 0.09 1.85 1.94 44.92 0.09 1.93 16 6 N -0.54 -15.33 4.37 -901.63 -3.94 -19.26 16 7 C 0.02 0.67 8.75 127.69 1.12 1.79 16 8 C 0.05 1.30 5.26 85.55 0.45 1.75 16 9 C 0.49 20.33 7.52 87.65 0.66 20.99 16 10 O -0.58 -29.72 14.33 -3.03 -0.04 -29.77 16 11 N -0.71 -30.56 5.55 -466.80 -2.59 -33.15 16 12 C 0.27 15.02 5.43 85.63 0.46 15.48 16 13 C -0.55 -30.43 9.28 25.60 0.24 -30.19 16 14 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 15 C 0.00 0.10 5.46 84.65 0.46 0.56 16 16 N -0.93 -56.92 13.29 21.45 0.28 -56.64 16 17 Si 0.99 42.58 29.54 68.60 2.03 44.60 16 18 H -0.25 -10.00 7.11 99.48 0.71 -9.30 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 21 C -0.12 -2.18 5.00 30.59 0.15 -2.03 16 22 C -0.11 -1.51 5.20 30.60 0.16 -1.35 16 23 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.20 6.34 -2.39 -0.02 1.19 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 2.05 6.23 -2.39 -0.01 2.03 16 33 H 0.05 1.93 5.82 -2.39 -0.01 1.92 16 34 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.13 2.96 5.83 -2.39 -0.01 2.95 16 36 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 37 H 0.41 14.32 8.32 -92.71 -0.77 13.55 16 38 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 39 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 41 H 0.07 1.21 6.20 -2.39 -0.01 1.20 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -71.26 340.96 0.66 -70.60 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.19 Total: 20.20 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 4.73 Total: 3.42 kcal Atomic # 7 Polarization: -102.81 SS G_CDS: -6.24 Total: -109.05 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.04 Total: -29.77 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -71.26 0.66 -70.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053098906.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.011 kcal (2) G-P(sol) polarization free energy of solvation -71.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds