Wall clock time and date at job start Mon Mar 30 2020 01:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48493 * 109.47429 * 269.99981 * 3 2 1 5 5 H 1.48499 * 109.47178 * 149.99937 * 3 2 1 6 6 H 1.48503 * 109.47198 * 29.99953 * 3 2 1 7 7 C 1.37871 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47412 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47263 * 179.97438 * 10 9 7 12 12 C 1.46958 * 111.00396 * 293.80101 * 11 10 9 13 13 C 1.53046 * 109.36922 * 176.80834 * 12 11 10 14 14 N 1.46954 * 109.36168 * 58.40097 * 13 12 11 15 15 C 1.46909 * 110.99906 * 176.81280 * 14 13 12 16 16 C 1.52999 * 109.47077 * 48.55263 * 15 14 13 17 17 H 1.08999 * 110.32952 * 307.98709 * 16 15 14 18 18 C 1.54477 * 110.37152 * 185.73691 * 16 15 14 19 19 C 1.54511 * 104.06201 * 217.19004 * 18 16 15 20 20 C 1.54479 * 104.06089 * 0.02562 * 19 18 16 21 21 O 1.44423 * 110.37031 * 70.23690 * 16 15 14 22 22 C 1.46960 * 110.88270 * 300.68058 * 14 13 12 23 23 C 1.46963 * 111.00368 * 170.00249 * 11 10 9 24 24 H 0.97007 * 119.99695 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47084 * 300.00627 * 9 7 2 26 26 H 1.08999 * 109.46527 * 60.00161 * 9 7 2 27 27 H 1.08999 * 109.47700 * 300.00439 * 10 9 7 28 28 H 1.08999 * 109.47198 * 60.00505 * 10 9 7 29 29 H 1.08995 * 109.48983 * 296.78023 * 12 11 10 30 30 H 1.09008 * 109.48617 * 56.84109 * 12 11 10 31 31 H 1.08999 * 109.48873 * 298.43812 * 13 12 11 32 32 H 1.08999 * 109.50887 * 178.38470 * 13 12 11 33 33 H 1.09001 * 109.47220 * 168.55040 * 15 14 13 34 34 H 1.08995 * 109.47006 * 288.55179 * 15 14 13 35 35 H 1.08998 * 110.51247 * 335.83641 * 18 16 15 36 36 H 1.08996 * 110.50976 * 98.54728 * 18 16 15 37 37 H 1.08998 * 110.51436 * 118.64539 * 19 18 16 38 38 H 1.09000 * 110.51182 * 241.35618 * 19 18 16 39 39 H 1.09000 * 110.37228 * 142.81590 * 20 19 18 40 40 H 1.09004 * 110.37123 * 265.02994 * 20 19 18 41 41 H 1.09002 * 109.48683 * 299.35202 * 22 14 13 42 42 H 1.08995 * 109.50277 * 179.30082 * 22 14 13 43 43 H 1.09007 * 109.48386 * 303.15557 * 23 11 10 44 44 H 1.08993 * 109.48877 * 63.21860 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5466 1.4403 0.7000 6 1 1.4465 2.6527 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 0.7686 -5.1132 1.2556 13 6 -0.0439 -6.4083 1.1846 14 7 0.8629 -7.5399 0.9464 15 6 0.1284 -8.8122 0.9470 16 6 -1.1038 -8.6901 0.0483 17 1 -1.6890 -7.8131 0.3251 18 6 -1.9688 -9.9663 0.1455 19 6 -2.4925 -10.1754 -1.2930 20 6 -1.8813 -9.0011 -2.0893 21 8 -0.7089 -8.6138 -1.3387 22 6 1.6053 -7.3609 -0.3092 23 6 2.4178 -6.0659 -0.2381 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6242 -2.5567 -0.8903 27 1 2.8722 -3.6042 -0.8904 28 1 2.8720 -3.6043 0.8895 29 1 1.4700 -5.1692 2.0880 30 1 0.0951 -4.2690 1.4034 31 1 -0.7641 -6.3415 0.3692 32 1 -0.5731 -6.5580 2.1257 33 1 0.7750 -9.6052 0.5712 34 1 -0.1853 -9.0502 1.9634 35 1 -1.3621 -10.8160 0.4584 36 1 -2.7986 -9.8136 0.8356 37 1 -2.1446 -11.1284 -1.6914 38 1 -3.5812 -10.1260 -1.3141 39 1 -1.6013 -9.3269 -3.0910 40 1 -2.5869 -8.1720 -2.1442 41 1 0.9038 -7.3050 -1.1416 42 1 2.2787 -8.2051 -0.4572 43 1 2.9466 -5.9163 -1.1795 44 1 3.1380 -6.1327 0.5773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057570040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:00 Heat of formation + Delta-G solvation = -43.858302 kcal Electronic energy + Delta-G solvation = -21395.115906 eV Core-core repulsion = 18346.917571 eV Total energy + Delta-G solvation = -3048.198335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.10325 -38.52457 -35.64650 -33.29846 -32.37183 -30.88426 -30.55153 -29.01814 -26.54611 -24.27449 -23.53464 -23.13198 -21.80752 -21.35630 -20.50093 -19.18184 -16.92954 -16.64873 -16.18597 -15.74024 -15.43562 -14.79166 -14.57377 -14.37962 -13.94756 -13.80837 -13.69840 -13.55544 -12.76687 -12.53432 -12.26521 -12.05706 -11.98228 -11.92265 -11.48915 -11.38610 -11.21210 -11.08098 -10.80800 -10.75936 -10.69185 -10.37925 -10.10658 -9.96734 -9.86907 -9.56702 -8.51354 -8.25865 -8.19244 -7.69654 -6.31180 -3.99230 3.46758 3.50578 3.61378 3.66207 4.08019 4.33327 4.44249 4.46846 4.63288 4.65565 4.82637 4.96120 5.13132 5.19435 5.26798 5.39228 5.41569 5.45366 5.47011 5.54529 5.56464 5.63475 5.67900 5.74285 5.77913 5.80790 5.89634 6.06646 6.18178 6.25275 6.33101 6.41227 6.50342 6.67175 6.88811 7.08358 7.14904 7.37638 7.49500 7.75599 7.80226 8.30677 8.52566 8.94504 9.72971 11.10006 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003641 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.780806 B = 7689.056963 C = 8001.337447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.015 3.985 3 Si 1.072 2.928 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.602 4.602 8 H 0.047 0.953 9 C 0.016 3.984 10 C 0.071 3.929 11 N -0.540 5.540 12 C 0.058 3.942 13 C 0.054 3.946 14 N -0.536 5.536 15 C 0.063 3.937 16 C 0.033 3.967 17 H 0.076 0.924 18 C -0.148 4.148 19 C -0.154 4.154 20 C 0.041 3.959 21 O -0.362 6.362 22 C 0.056 3.944 23 C 0.056 3.944 24 H 0.269 0.731 25 H 0.007 0.993 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.021 0.979 29 H 0.034 0.966 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -22.018 0.254 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.900 3.100 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.641 4.641 8 H 0.066 0.934 9 C -0.022 4.022 10 C -0.056 4.056 11 N -0.265 5.265 12 C -0.070 4.070 13 C -0.074 4.074 14 N -0.259 5.259 15 C -0.066 4.066 16 C -0.026 4.026 17 H 0.093 0.907 18 C -0.186 4.186 19 C -0.192 4.192 20 C -0.036 4.036 21 O -0.281 6.281 22 C -0.072 4.072 23 C -0.073 4.073 24 H 0.080 0.920 25 H 0.025 0.975 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.107 0.893 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.430 -20.294 0.181 20.582 hybrid contribution -0.053 -1.794 0.034 1.795 sum -3.483 -22.087 0.215 22.361 Atomic orbital electron populations 1.70738 1.06865 1.30662 1.46762 1.25821 0.96568 1.02627 0.93852 0.83510 0.74629 0.75115 0.76719 1.21469 1.21556 1.21030 1.22050 0.94266 0.92084 1.55691 0.93439 1.19214 0.94642 0.91943 0.96365 1.22154 0.96369 0.87949 0.99115 1.62243 1.27849 1.02548 1.33887 1.22128 0.97435 0.96592 0.90856 1.22249 0.94532 0.90191 1.00411 1.62385 1.26685 1.01652 1.35151 1.22350 0.92698 0.93208 0.98359 1.23928 0.97357 0.97440 0.83870 0.90667 1.22937 0.99818 0.98602 0.97242 1.22919 1.01075 0.99732 0.95478 1.23415 0.88175 0.95692 0.96279 1.89235 1.33206 1.89197 1.16478 1.22275 0.97173 0.96673 0.91039 1.22133 0.94189 0.90517 1.00423 0.92026 0.97475 0.96718 0.92026 0.96089 0.94782 0.89683 0.93430 0.90960 0.90207 0.89505 0.90606 0.90652 0.90836 0.90715 0.89283 0.92372 0.91654 0.91337 0.90862 0.95004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.64 13.65 55.43 0.76 -27.88 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.93 29.90 -169.99 -5.08 20.84 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.60 -17.71 9.11 -34.44 -0.31 -18.02 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 9 C 0.02 0.42 4.22 -27.89 -0.12 0.30 16 10 C 0.07 1.59 4.90 -3.83 -0.02 1.58 16 11 N -0.54 -10.55 4.71 -234.47 -1.10 -11.65 16 12 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 13 C 0.05 0.80 4.78 -3.77 -0.02 0.78 16 14 N -0.54 -7.39 4.92 -234.47 -1.15 -8.55 16 15 C 0.06 0.67 5.21 -3.82 -0.02 0.65 16 16 C 0.03 0.35 2.75 -25.96 -0.07 0.28 16 17 H 0.08 0.88 5.95 -51.93 -0.31 0.57 16 18 C -0.15 -1.18 6.63 -25.16 -0.17 -1.34 16 19 C -0.15 -1.17 7.09 -25.16 -0.18 -1.35 16 20 C 0.04 0.40 7.63 37.93 0.29 0.69 16 21 O -0.36 -4.56 8.80 -35.23 -0.31 -4.87 16 22 C 0.06 0.82 5.19 -3.77 -0.02 0.80 16 23 C 0.06 0.93 5.61 -3.77 -0.02 0.91 16 24 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 25 H 0.01 0.20 6.36 -51.92 -0.33 -0.13 16 26 H 0.01 0.42 8.01 -51.93 -0.42 0.00 16 27 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 28 H 0.02 0.48 8.12 -51.93 -0.42 0.05 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.66 6.34 -51.92 -0.33 1.33 16 31 H 0.05 0.75 6.24 -51.93 -0.32 0.42 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.06 5.85 -51.93 -0.30 0.75 16 42 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 43 H 0.07 1.17 8.07 -51.92 -0.42 0.75 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 332.30 15.07 5.01 5.01 Total: -1.00 -32.15 332.30 -10.47 -42.62 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -7.81 Total: -2.18 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -0.77 Total: -13.35 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: -1.50 Total: -48.08 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.31 Total: -4.87 kcal Atomic # 14 Polarization: 25.93 SS G_CDS: -5.08 Total: 20.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.15 -10.47 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057570040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.237 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds