Wall clock time and date at job start Mon Mar 30 2020 01:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99795 * 2 1 4 4 H 1.48493 * 109.47429 * 269.99981 * 3 2 1 5 5 H 1.48499 * 109.47178 * 149.99937 * 3 2 1 6 6 H 1.48503 * 109.47198 * 29.99953 * 3 2 1 7 7 C 1.37871 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00274 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47412 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47263 * 179.97438 * 10 9 7 12 12 C 1.46958 * 111.00396 * 293.80101 * 11 10 9 13 13 C 1.53046 * 109.36922 * 176.80834 * 12 11 10 14 14 N 1.46954 * 109.36168 * 58.40097 * 13 12 11 15 15 C 1.46909 * 110.99906 * 176.81280 * 14 13 12 16 16 C 1.52999 * 109.47077 * 48.55263 * 15 14 13 17 17 H 1.08999 * 110.32952 * 307.98709 * 16 15 14 18 18 C 1.54477 * 110.37152 * 185.73691 * 16 15 14 19 19 C 1.54511 * 104.06201 * 217.19004 * 18 16 15 20 20 C 1.54479 * 104.06089 * 0.02562 * 19 18 16 21 21 O 1.44423 * 110.37031 * 70.23690 * 16 15 14 22 22 C 1.46960 * 110.88270 * 300.68058 * 14 13 12 23 23 C 1.46963 * 111.00368 * 170.00249 * 11 10 9 24 24 H 0.97007 * 119.99695 * 179.97438 * 1 2 3 25 25 H 1.09008 * 109.47084 * 300.00627 * 9 7 2 26 26 H 1.08999 * 109.46527 * 60.00161 * 9 7 2 27 27 H 1.08999 * 109.47700 * 300.00439 * 10 9 7 28 28 H 1.08999 * 109.47198 * 60.00505 * 10 9 7 29 29 H 1.08995 * 109.48983 * 296.78023 * 12 11 10 30 30 H 1.09008 * 109.48617 * 56.84109 * 12 11 10 31 31 H 1.08999 * 109.48873 * 298.43812 * 13 12 11 32 32 H 1.08999 * 109.50887 * 178.38470 * 13 12 11 33 33 H 1.09001 * 109.47220 * 168.55040 * 15 14 13 34 34 H 1.08995 * 109.47006 * 288.55179 * 15 14 13 35 35 H 1.08998 * 110.51247 * 335.83641 * 18 16 15 36 36 H 1.08996 * 110.50976 * 98.54728 * 18 16 15 37 37 H 1.08998 * 110.51436 * 118.64539 * 19 18 16 38 38 H 1.09000 * 110.51182 * 241.35618 * 19 18 16 39 39 H 1.09000 * 110.37228 * 142.81590 * 20 19 18 40 40 H 1.09004 * 110.37123 * 265.02994 * 20 19 18 41 41 H 1.09002 * 109.48683 * 299.35202 * 22 14 13 42 42 H 1.08995 * 109.50277 * 179.30082 * 22 14 13 43 43 H 1.09007 * 109.48386 * 303.15557 * 23 11 10 44 44 H 1.08993 * 109.48877 * 63.21860 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 3.5466 1.4403 0.7000 6 1 1.4465 2.6527 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5110 -4.9342 0.0001 12 6 0.7686 -5.1132 1.2556 13 6 -0.0439 -6.4083 1.1846 14 7 0.8629 -7.5399 0.9464 15 6 0.1284 -8.8122 0.9470 16 6 -1.1038 -8.6901 0.0483 17 1 -1.6890 -7.8131 0.3251 18 6 -1.9688 -9.9663 0.1455 19 6 -2.4925 -10.1754 -1.2930 20 6 -1.8813 -9.0011 -2.0893 21 8 -0.7089 -8.6138 -1.3387 22 6 1.6053 -7.3609 -0.3092 23 6 2.4178 -6.0659 -0.2381 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6242 -2.5567 -0.8903 27 1 2.8722 -3.6042 -0.8904 28 1 2.8720 -3.6043 0.8895 29 1 1.4700 -5.1692 2.0880 30 1 0.0951 -4.2690 1.4034 31 1 -0.7641 -6.3415 0.3692 32 1 -0.5731 -6.5580 2.1257 33 1 0.7750 -9.6052 0.5712 34 1 -0.1853 -9.0502 1.9634 35 1 -1.3621 -10.8160 0.4584 36 1 -2.7986 -9.8136 0.8356 37 1 -2.1446 -11.1284 -1.6914 38 1 -3.5812 -10.1260 -1.3141 39 1 -1.6013 -9.3269 -3.0910 40 1 -2.5869 -8.1720 -2.1442 41 1 0.9038 -7.3050 -1.1416 42 1 2.2787 -8.2051 -0.4572 43 1 2.9466 -5.9163 -1.1795 44 1 3.1380 -6.1327 0.5773 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057570040.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:59 Heat of formation + Delta-G solvation = -66.683624 kcal Electronic energy + Delta-G solvation = -21396.105686 eV Core-core repulsion = 18346.917571 eV Total energy + Delta-G solvation = -3049.188115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06534 -39.71424 -37.09925 -35.35917 -33.14495 -32.27539 -31.86529 -30.46014 -27.89792 -25.85370 -24.86537 -24.63990 -22.76678 -22.37795 -22.06839 -20.44199 -18.95206 -17.74988 -17.19452 -16.65236 -16.57551 -16.05269 -15.91934 -15.75440 -15.60600 -15.35982 -15.02324 -14.62532 -14.33174 -14.13640 -13.58904 -13.29937 -13.26009 -12.88363 -12.73578 -12.64291 -12.42061 -12.29618 -12.21660 -12.02522 -11.98012 -11.90267 -11.64354 -11.49103 -11.41900 -10.73108 -10.71678 -10.54349 -9.39078 -9.19490 -8.71302 -6.41180 1.51779 1.61699 1.79521 2.55057 2.76009 2.96544 3.11360 3.14925 3.63479 3.75635 3.90297 3.97092 4.01650 4.06269 4.16181 4.22252 4.28369 4.34824 4.46965 4.48722 4.54572 4.57620 4.63114 4.73445 4.77539 4.82659 4.86673 4.88606 4.92455 4.95479 4.97977 5.10149 5.16804 5.17210 5.24915 5.39736 5.83249 5.86963 5.99330 6.04298 6.15620 6.19291 6.22266 6.55721 7.41428 8.69735 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.032711 B = 0.003641 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.780806 B = 7689.056963 C = 8001.337447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.038 4.038 3 Si 1.123 2.877 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.281 1.281 7 C -0.621 4.621 8 H 0.050 0.950 9 C 0.023 3.977 10 C 0.087 3.913 11 N -0.552 5.552 12 C 0.059 3.941 13 C 0.066 3.934 14 N -0.540 5.540 15 C 0.064 3.936 16 C 0.030 3.970 17 H 0.060 0.940 18 C -0.142 4.142 19 C -0.148 4.148 20 C 0.032 3.968 21 O -0.390 6.390 22 C 0.065 3.935 23 C 0.056 3.944 24 H 0.254 0.746 25 H -0.009 1.009 26 H -0.013 1.013 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 -23.549 0.670 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.944 3.056 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.206 1.206 7 C -0.660 4.660 8 H 0.069 0.931 9 C -0.014 4.014 10 C -0.041 4.041 11 N -0.277 5.277 12 C -0.069 4.069 13 C -0.062 4.062 14 N -0.263 5.263 15 C -0.064 4.064 16 C -0.029 4.029 17 H 0.078 0.922 18 C -0.180 4.180 19 C -0.186 4.186 20 C -0.044 4.044 21 O -0.310 6.310 22 C -0.063 4.063 23 C -0.072 4.072 24 H 0.064 0.936 25 H 0.010 0.990 26 H 0.005 0.995 27 H 0.080 0.920 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.126 0.874 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.114 0.886 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.825 -21.876 0.596 22.065 hybrid contribution -0.271 -1.375 -0.114 1.406 sum -3.096 -23.250 0.482 23.461 Atomic orbital electron populations 1.70880 1.07942 1.29804 1.48628 1.27502 0.96607 1.06893 0.92541 0.82873 0.74127 0.70767 0.77880 1.19678 1.19353 1.20618 1.22465 0.94686 0.93372 1.55449 0.93135 1.19067 0.94825 0.93339 0.94187 1.21812 0.95104 0.88225 0.98926 1.62177 1.28345 1.02306 1.34867 1.22110 0.97085 0.97652 0.90099 1.22101 0.93822 0.89090 1.01159 1.62392 1.26966 1.02442 1.34504 1.22466 0.92657 0.91548 0.99701 1.23939 0.97498 0.98296 0.83162 0.92222 1.22924 0.99887 0.97443 0.97730 1.22908 1.01729 0.99104 0.94847 1.23568 0.87538 0.96393 0.96909 1.89201 1.34582 1.89585 1.17588 1.22174 0.97007 0.96070 0.91018 1.22223 0.94079 0.90239 1.00655 0.93631 0.99033 0.99504 0.91958 0.96389 0.94997 0.92219 0.94677 0.88679 0.89338 0.87404 0.89352 0.89425 0.89775 0.89475 0.88568 0.93226 0.93210 0.89256 0.90371 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.91 13.65 21.44 0.29 -59.62 16 2 C -0.04 -2.29 5.46 84.65 0.46 -1.82 16 3 Si 1.12 51.64 29.90 68.60 2.05 53.69 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.62 -37.16 9.11 25.60 0.23 -36.92 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.02 1.29 4.22 29.85 0.13 1.42 16 10 C 0.09 3.99 4.90 86.30 0.42 4.41 16 11 N -0.55 -21.91 4.71 -895.74 -4.22 -26.13 16 12 C 0.06 2.16 5.41 86.31 0.47 2.63 16 13 C 0.07 1.93 4.78 86.31 0.41 2.34 16 14 N -0.54 -14.03 4.92 -895.73 -4.40 -18.43 16 15 C 0.06 1.23 5.21 86.30 0.45 1.68 16 16 C 0.03 0.59 2.75 31.10 0.09 0.68 16 17 H 0.06 1.35 5.95 -2.39 -0.01 1.34 16 18 C -0.14 -1.89 6.63 31.61 0.21 -1.68 16 19 C -0.15 -1.93 7.09 31.61 0.22 -1.70 16 20 C 0.03 0.60 7.63 72.48 0.55 1.15 16 21 O -0.39 -9.50 8.80 -148.98 -1.31 -10.81 16 22 C 0.07 1.83 5.19 86.31 0.45 2.28 16 23 C 0.06 1.82 5.61 86.31 0.48 2.31 16 24 H 0.25 16.63 7.22 -92.70 -0.67 15.96 16 25 H -0.01 -0.50 6.36 -2.38 -0.02 -0.51 16 26 H -0.01 -0.81 8.01 -2.39 -0.02 -0.83 16 27 H 0.06 2.82 8.03 -2.39 -0.02 2.80 16 28 H 0.02 0.83 8.12 -2.39 -0.02 0.81 16 29 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 2.46 6.34 -2.38 -0.02 2.44 16 31 H 0.04 1.12 6.24 -2.39 -0.01 1.10 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 1.58 7.93 -2.39 -0.02 1.56 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.09 0.98 7.87 -2.39 -0.02 0.96 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.05 1.59 5.85 -2.39 -0.01 1.57 16 42 H 0.09 2.15 8.03 -2.39 -0.02 2.13 16 43 H 0.08 2.44 8.07 -2.38 -0.02 2.42 16 44 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -70.16 332.30 -1.97 -72.13 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 1.05 Total: 12.40 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 4.58 Total: -23.23 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -8.33 Total: -104.18 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -1.31 Total: -10.81 kcal Atomic # 14 Polarization: 51.64 SS G_CDS: 2.05 Total: 53.69 kcal Total: -70.16 -1.97 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057570040.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.448 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds