Wall clock time and date at job start Mon Mar 30 2020 01:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00093 * 2 1 4 4 H 1.48510 * 109.46794 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47037 * 299.99371 * 3 2 1 6 6 H 1.48494 * 109.47159 * 59.99882 * 3 2 1 7 7 C 1.38816 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99845 * 163.07112 * 7 2 1 9 9 N 1.36937 * 120.00077 * 343.05941 * 7 2 1 10 10 C 1.46930 * 120.63157 * 331.84677 * 9 7 2 11 11 C 1.53189 * 108.77521 * 233.62791 * 10 9 7 12 12 C 1.53045 * 109.31186 * 305.36349 * 11 10 9 13 13 C 1.53001 * 109.45730 * 181.38429 * 12 11 10 14 14 C 1.53006 * 109.46743 * 174.99900 * 13 12 11 15 15 N 1.46898 * 109.46779 * 179.97438 * 14 13 12 16 16 C 1.47020 * 110.99672 * 46.32192 * 15 14 13 17 17 C 1.53099 * 109.25344 * 182.34456 * 16 15 14 18 18 O 1.43014 * 109.29610 * 303.21914 * 17 16 15 19 19 C 1.43013 * 113.73619 * 58.64998 * 18 17 16 20 20 C 1.47010 * 110.99797 * 170.00065 * 15 14 13 21 21 C 1.53038 * 109.53516 * 61.36724 * 12 11 10 22 22 C 1.46925 * 120.62923 * 151.86609 * 9 7 2 23 23 H 0.97007 * 119.99793 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.58707 * 113.83869 * 10 9 7 25 25 H 1.09004 * 109.69926 * 353.48219 * 10 9 7 26 26 H 1.09003 * 109.50072 * 185.41346 * 11 10 9 27 27 H 1.09003 * 109.49827 * 65.31612 * 11 10 9 28 28 H 1.08991 * 109.46209 * 301.35701 * 12 11 10 29 29 H 1.09004 * 109.47416 * 55.00291 * 13 12 11 30 30 H 1.08996 * 109.47317 * 295.00038 * 13 12 11 31 31 H 1.09003 * 109.46691 * 60.00572 * 14 13 12 32 32 H 1.08996 * 109.47326 * 300.00132 * 14 13 12 33 33 H 1.09007 * 109.47124 * 62.43636 * 16 15 14 34 34 H 1.08996 * 109.54852 * 302.30221 * 16 15 14 35 35 H 1.09006 * 109.50612 * 183.26354 * 17 16 15 36 36 H 1.09002 * 109.50433 * 63.18090 * 17 16 15 37 37 H 1.09001 * 109.50930 * 61.26726 * 19 18 17 38 38 H 1.09004 * 109.50452 * 181.35214 * 19 18 17 39 39 H 1.09001 * 109.50670 * 57.67502 * 20 15 14 40 40 H 1.09002 * 109.50892 * 297.54657 * 20 15 14 41 41 H 1.09001 * 109.50057 * 58.58973 * 21 12 11 42 42 H 1.09000 * 109.49632 * 178.68381 * 21 12 11 43 43 H 1.09003 * 109.58468 * 246.15739 * 22 9 7 44 44 H 1.08996 * 109.58778 * 6.44250 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0550 -1.2226 -0.2718 9 7 1.3700 -2.3622 0.3466 10 6 0.2262 -2.3397 1.2686 11 6 0.4982 -3.3178 2.4157 12 6 0.8132 -4.6998 1.8386 13 6 1.0516 -5.6876 2.9824 14 6 1.2431 -7.0937 2.4104 15 7 1.4726 -8.0420 3.5085 16 6 0.5039 -7.8344 4.5949 17 6 0.8150 -8.8014 5.7403 18 8 0.7950 -10.1429 5.2449 19 6 1.7275 -10.3797 4.1867 20 6 1.4250 -9.4295 3.0250 21 6 2.0684 -4.6165 0.9670 22 6 1.8142 -3.6531 -0.1966 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6769 -2.6410 0.7378 25 1 0.0965 -1.3341 1.6687 26 1 -0.3822 -3.3826 3.0551 27 1 1.3479 -2.9654 3.0005 28 1 -0.0268 -5.0407 1.2335 29 1 0.1918 -5.6820 3.6525 30 1 1.9446 -5.3953 3.5347 31 1 2.1029 -7.0993 1.7403 32 1 0.3500 -7.3860 1.8580 33 1 -0.5038 -8.0218 4.2238 34 1 0.5746 -6.8083 4.9555 35 1 0.0648 -8.6914 6.5234 36 1 1.8013 -8.5783 6.1472 37 1 2.7406 -10.2023 4.5478 38 1 1.6378 -11.4114 3.8467 39 1 2.1681 -9.5669 2.2395 40 1 0.4322 -9.6431 2.6291 41 1 2.9033 -4.2519 1.5654 42 1 2.3055 -5.6056 0.5752 43 1 1.0405 -4.0615 -0.8468 44 1 2.7334 -3.5133 -0.7655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064344390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:28 Heat of formation + Delta-G solvation = -30.497623 kcal Electronic energy + Delta-G solvation = -21214.038940 eV Core-core repulsion = 18166.419967 eV Total energy + Delta-G solvation = -3047.618972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.81861 -37.99183 -36.13183 -33.76705 -31.59323 -31.16826 -30.02475 -28.95858 -26.78831 -24.57297 -24.22691 -22.70398 -21.84336 -20.78570 -20.05531 -19.04852 -16.90980 -16.53073 -16.31052 -15.38532 -15.27432 -15.05832 -14.77403 -14.29296 -13.99964 -13.66955 -13.46051 -13.19815 -12.87005 -12.52606 -12.31132 -12.10910 -11.96781 -11.60894 -11.29890 -11.19636 -11.04263 -10.80661 -10.69959 -10.61975 -10.33494 -10.13348 -10.08415 -9.90409 -9.79126 -9.38809 -9.30285 -8.50792 -8.43585 -6.61732 -5.75378 -3.17514 3.38550 3.46347 3.48830 3.55463 3.71577 4.52478 4.64665 4.77426 4.82190 4.92969 5.03034 5.15559 5.20503 5.32061 5.37232 5.40778 5.43201 5.52702 5.56483 5.58945 5.65722 5.75089 5.81436 5.86032 6.09742 6.17009 6.21767 6.32736 6.42700 6.58911 6.66881 6.75725 6.80748 6.87953 6.88612 6.91488 6.94551 7.06754 7.43327 7.70731 7.83052 8.49241 9.25564 9.89498 10.46778 11.32991 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049062 B = 0.003352 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.574226 B = 8352.328010 C = 8558.978821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.171 3.829 11 C -0.134 4.134 12 C -0.077 4.077 13 C -0.116 4.116 14 C 0.055 3.945 15 N -0.538 5.538 16 C 0.011 3.989 17 C 0.063 3.937 18 O -0.389 6.389 19 C 0.064 3.936 20 C 0.017 3.983 21 C -0.127 4.127 22 C 0.144 3.856 23 H 0.252 0.748 24 H 0.015 0.985 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.041 0.959 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.041 0.959 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.014 0.986 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.591 -17.875 8.719 19.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.045 3.955 11 C -0.173 4.173 12 C -0.096 4.096 13 C -0.153 4.153 14 C -0.072 4.072 15 N -0.263 5.263 16 C -0.117 4.117 17 C -0.014 4.014 18 O -0.307 6.307 19 C -0.013 4.013 20 C -0.112 4.112 21 C -0.166 4.166 22 C 0.018 3.982 23 H 0.062 0.938 24 H 0.033 0.967 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.842 -17.784 8.959 19.998 hybrid contribution -0.296 0.969 -0.539 1.148 sum 1.546 -16.815 8.420 18.869 Atomic orbital electron populations 1.70048 1.05263 1.25269 1.54259 1.25045 0.95286 0.98384 1.01098 0.86239 0.79387 0.84031 0.77238 1.20264 1.21773 1.21597 1.19242 0.92542 0.84908 1.41258 0.91741 1.44061 1.35920 1.01516 1.50094 1.20750 0.88526 0.98146 0.88032 1.22214 0.99827 0.95521 0.99770 1.21014 0.98128 0.95057 0.95390 1.21827 1.01720 0.93134 0.98647 1.22281 1.00511 0.91945 0.92433 1.62311 1.50129 1.03295 1.10595 1.22896 0.94266 1.01259 0.93259 1.22701 1.02008 0.81388 0.95305 1.87965 1.60954 1.29128 1.52698 1.22654 0.93011 0.98702 0.86922 1.22779 1.01201 0.89079 0.98118 1.22083 0.97230 0.98584 0.98672 1.20902 0.97338 0.87050 0.92903 0.93770 0.96703 0.89649 0.93631 0.92759 0.92247 0.92326 0.91360 0.90067 0.94913 0.94073 0.88719 0.88571 0.92282 0.92293 0.88629 0.89641 0.94063 0.92403 0.93336 0.96794 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 11.19 55.49 0.62 -25.95 16 2 C 0.00 0.00 4.92 -17.43 -0.09 -0.08 16 3 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 7 C -0.25 -6.98 9.58 -15.06 -0.14 -7.12 16 8 H 0.06 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -15.14 2.99 -172.32 -0.52 -15.66 16 10 C 0.17 4.14 5.30 -3.71 -0.02 4.12 16 11 C -0.13 -2.57 5.36 -26.61 -0.14 -2.71 16 12 C -0.08 -1.27 2.15 -90.58 -0.19 -1.46 16 13 C -0.12 -1.55 3.95 -26.73 -0.11 -1.66 16 14 C 0.06 0.68 5.03 -3.82 -0.02 0.66 16 15 N -0.54 -6.14 4.87 -234.30 -1.14 -7.28 16 16 C 0.01 0.12 4.94 -3.71 -0.02 0.10 16 17 C 0.06 0.60 7.01 37.21 0.26 0.86 16 18 O -0.39 -4.31 10.83 -35.23 -0.38 -4.69 16 19 C 0.06 0.58 7.01 37.21 0.26 0.84 16 20 C 0.02 0.16 5.63 -3.71 -0.02 0.14 16 21 C -0.13 -2.19 5.14 -26.61 -0.14 -2.33 16 22 C 0.14 3.08 6.52 -3.71 -0.02 3.06 16 23 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 2.32 6.06 -51.93 -0.31 2.00 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.75 6.28 -51.93 -0.33 0.42 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.01 6.53 -51.93 -0.34 0.67 16 32 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.98 6.05 -51.93 -0.31 0.66 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.72 6.50 -51.93 -0.34 0.39 16 43 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 LS Contribution 330.96 15.07 4.99 4.99 Total: -1.00 -30.30 330.96 -9.78 -40.08 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.93 Total: -2.80 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -0.39 Total: -5.57 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -1.04 Total: -48.89 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.38 Total: -4.69 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.30 -9.78 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064344390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.582 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds