Wall clock time and date at job start Mon Mar 30 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00093 * 2 1 4 4 H 1.48510 * 109.46794 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47037 * 299.99371 * 3 2 1 6 6 H 1.48494 * 109.47159 * 59.99882 * 3 2 1 7 7 C 1.38816 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99845 * 163.07112 * 7 2 1 9 9 N 1.36937 * 120.00077 * 343.05941 * 7 2 1 10 10 C 1.46930 * 120.63157 * 331.84677 * 9 7 2 11 11 C 1.53189 * 108.77521 * 233.62791 * 10 9 7 12 12 C 1.53045 * 109.31186 * 305.36349 * 11 10 9 13 13 C 1.53001 * 109.45730 * 181.38429 * 12 11 10 14 14 C 1.53006 * 109.46743 * 174.99900 * 13 12 11 15 15 N 1.46898 * 109.46779 * 179.97438 * 14 13 12 16 16 C 1.47020 * 110.99672 * 46.32192 * 15 14 13 17 17 C 1.53099 * 109.25344 * 182.34456 * 16 15 14 18 18 O 1.43014 * 109.29610 * 303.21914 * 17 16 15 19 19 C 1.43013 * 113.73619 * 58.64998 * 18 17 16 20 20 C 1.47010 * 110.99797 * 170.00065 * 15 14 13 21 21 C 1.53038 * 109.53516 * 61.36724 * 12 11 10 22 22 C 1.46925 * 120.62923 * 151.86609 * 9 7 2 23 23 H 0.97007 * 119.99793 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.58707 * 113.83869 * 10 9 7 25 25 H 1.09004 * 109.69926 * 353.48219 * 10 9 7 26 26 H 1.09003 * 109.50072 * 185.41346 * 11 10 9 27 27 H 1.09003 * 109.49827 * 65.31612 * 11 10 9 28 28 H 1.08991 * 109.46209 * 301.35701 * 12 11 10 29 29 H 1.09004 * 109.47416 * 55.00291 * 13 12 11 30 30 H 1.08996 * 109.47317 * 295.00038 * 13 12 11 31 31 H 1.09003 * 109.46691 * 60.00572 * 14 13 12 32 32 H 1.08996 * 109.47326 * 300.00132 * 14 13 12 33 33 H 1.09007 * 109.47124 * 62.43636 * 16 15 14 34 34 H 1.08996 * 109.54852 * 302.30221 * 16 15 14 35 35 H 1.09006 * 109.50612 * 183.26354 * 17 16 15 36 36 H 1.09002 * 109.50433 * 63.18090 * 17 16 15 37 37 H 1.09001 * 109.50930 * 61.26726 * 19 18 17 38 38 H 1.09004 * 109.50452 * 181.35214 * 19 18 17 39 39 H 1.09001 * 109.50670 * 57.67502 * 20 15 14 40 40 H 1.09002 * 109.50892 * 297.54657 * 20 15 14 41 41 H 1.09001 * 109.50057 * 58.58973 * 21 12 11 42 42 H 1.09000 * 109.49632 * 178.68381 * 21 12 11 43 43 H 1.09003 * 109.58468 * 246.15739 * 22 9 7 44 44 H 1.08996 * 109.58778 * 6.44250 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0550 -1.2226 -0.2718 9 7 1.3700 -2.3622 0.3466 10 6 0.2262 -2.3397 1.2686 11 6 0.4982 -3.3178 2.4157 12 6 0.8132 -4.6998 1.8386 13 6 1.0516 -5.6876 2.9824 14 6 1.2431 -7.0937 2.4104 15 7 1.4726 -8.0420 3.5085 16 6 0.5039 -7.8344 4.5949 17 6 0.8150 -8.8014 5.7403 18 8 0.7950 -10.1429 5.2449 19 6 1.7275 -10.3797 4.1867 20 6 1.4250 -9.4295 3.0250 21 6 2.0684 -4.6165 0.9670 22 6 1.8142 -3.6531 -0.1966 23 1 -0.4850 0.8401 -0.0004 24 1 -0.6769 -2.6410 0.7378 25 1 0.0965 -1.3341 1.6687 26 1 -0.3822 -3.3826 3.0551 27 1 1.3479 -2.9654 3.0005 28 1 -0.0268 -5.0407 1.2335 29 1 0.1918 -5.6820 3.6525 30 1 1.9446 -5.3953 3.5347 31 1 2.1029 -7.0993 1.7403 32 1 0.3500 -7.3860 1.8580 33 1 -0.5038 -8.0218 4.2238 34 1 0.5746 -6.8083 4.9555 35 1 0.0648 -8.6914 6.5234 36 1 1.8013 -8.5783 6.1472 37 1 2.7406 -10.2023 4.5478 38 1 1.6378 -11.4114 3.8467 39 1 2.1681 -9.5669 2.2395 40 1 0.4322 -9.6431 2.6291 41 1 2.9033 -4.2519 1.5654 42 1 2.3055 -5.6056 0.5752 43 1 1.0405 -4.0615 -0.8468 44 1 2.7334 -3.5133 -0.7655 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064344390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:27 Heat of formation + Delta-G solvation = -50.000859 kcal Electronic energy + Delta-G solvation = -21214.884663 eV Core-core repulsion = 18166.419967 eV Total energy + Delta-G solvation = -3048.464696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.65212 -39.46689 -37.22692 -35.38269 -33.15930 -32.14234 -31.65041 -30.35888 -28.03232 -26.18374 -25.05294 -24.16102 -23.41836 -21.95735 -21.08032 -20.64260 -18.71701 -17.53011 -17.08063 -16.85424 -16.28046 -16.01723 -15.90518 -15.72284 -15.30416 -15.12026 -14.99352 -14.78907 -14.29517 -13.83442 -13.63030 -13.26446 -13.07383 -12.98346 -12.88942 -12.57928 -12.36444 -12.26745 -12.17057 -11.88872 -11.81223 -11.80046 -11.56116 -11.40976 -10.99252 -10.90370 -10.63919 -10.53261 -9.36779 -8.67271 -7.87669 -5.33439 1.45008 1.46622 1.57647 2.50725 2.75729 2.98903 3.26460 3.71985 3.79260 3.91335 3.98370 4.04036 4.16829 4.20695 4.24452 4.28874 4.39827 4.53189 4.59741 4.60259 4.67213 4.72582 4.75627 4.78728 4.84443 4.89189 4.93060 5.00227 5.05479 5.09021 5.12243 5.29418 5.38095 5.40640 5.47555 5.56158 5.66233 5.79719 5.98131 6.00417 6.19007 6.39239 7.14903 7.87146 8.38854 9.18479 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.049062 B = 0.003352 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.574226 B = 8352.328010 C = 8558.978821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.053 4.053 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.292 1.292 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.613 5.613 10 C 0.177 3.823 11 C -0.122 4.122 12 C -0.070 4.070 13 C -0.102 4.102 14 C 0.061 3.939 15 N -0.545 5.545 16 C 0.011 3.989 17 C 0.063 3.937 18 O -0.407 6.407 19 C 0.063 3.937 20 C 0.016 3.984 21 C -0.113 4.113 22 C 0.138 3.862 23 H 0.249 0.751 24 H -0.009 1.009 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.030 0.970 33 H 0.033 0.967 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.097 0.903 40 H 0.035 0.965 41 H 0.052 0.948 42 H 0.080 0.920 43 H 0.010 0.990 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.642 -19.373 9.603 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.248 4.248 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.161 4.161 12 C -0.089 4.089 13 C -0.139 4.139 14 C -0.066 4.066 15 N -0.270 5.270 16 C -0.117 4.117 17 C -0.014 4.014 18 O -0.326 6.326 19 C -0.014 4.014 20 C -0.112 4.112 21 C -0.152 4.152 22 C 0.013 3.987 23 H 0.058 0.942 24 H 0.009 0.991 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.115 0.885 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.115 0.885 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.027 0.973 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.911 -19.316 9.847 21.876 hybrid contribution -0.636 1.394 -0.860 1.757 sum 2.275 -17.922 8.987 20.177 Atomic orbital electron populations 1.70203 1.06725 1.25734 1.55602 1.25826 0.96079 1.01579 1.01351 0.85202 0.78637 0.79769 0.76821 1.19051 1.21865 1.21577 1.19569 0.92815 0.86198 1.40732 0.91720 1.44353 1.36011 1.02408 1.50870 1.20574 0.87572 0.97600 0.89171 1.22029 1.00470 0.95756 0.97850 1.20920 0.97564 0.94167 0.96261 1.21639 1.02069 0.92947 0.97265 1.22160 1.00467 0.91332 0.92660 1.62326 1.50359 1.03913 1.10434 1.22926 0.93710 1.01728 0.93382 1.22787 1.02734 0.80650 0.95237 1.87945 1.61586 1.29788 1.53272 1.22791 0.92794 0.99592 0.86218 1.22848 1.01260 0.88338 0.98787 1.21939 0.97361 0.98872 0.97048 1.21093 0.96900 0.86221 0.94519 0.94151 0.99059 0.93201 0.91732 0.93224 0.92608 0.91399 0.91461 0.89900 0.95146 0.94823 0.88474 0.87024 0.92006 0.91977 0.86721 0.88464 0.94683 0.92878 0.90150 0.97253 0.93138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.62 11.19 21.65 0.24 -56.37 16 2 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 3 Si 0.97 45.61 29.59 68.60 2.03 47.64 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 7 C -0.26 -14.87 9.58 84.03 0.81 -14.06 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.61 -31.71 2.99 -699.09 -2.09 -33.80 16 10 C 0.18 8.75 5.30 86.36 0.46 9.21 16 11 C -0.12 -4.58 5.36 30.67 0.16 -4.42 16 12 C -0.07 -2.18 2.15 -10.77 -0.02 -2.21 16 13 C -0.10 -2.47 3.95 30.60 0.12 -2.35 16 14 C 0.06 1.33 5.03 86.31 0.43 1.76 16 15 N -0.54 -11.08 4.87 -895.19 -4.36 -15.44 16 16 C 0.01 0.20 4.94 86.31 0.43 0.63 16 17 C 0.06 1.07 7.01 72.02 0.50 1.57 16 18 O -0.41 -8.17 10.83 -148.98 -1.61 -9.78 16 19 C 0.06 0.99 7.01 72.01 0.50 1.49 16 20 C 0.02 0.27 5.63 86.31 0.49 0.76 16 21 C -0.11 -3.72 5.14 30.67 0.16 -3.56 16 22 C 0.14 5.83 6.52 86.36 0.56 6.39 16 23 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.05 2.80 6.06 -2.38 -0.01 2.79 16 26 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 1.55 6.28 -2.38 -0.01 1.54 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.08 1.78 6.53 -2.39 -0.02 1.77 16 32 H 0.03 0.68 8.08 -2.39 -0.02 0.66 16 33 H 0.03 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.10 1.77 6.05 -2.39 -0.01 1.75 16 35 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 2.15 6.50 -2.39 -0.02 2.14 16 43 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 Total: -1.00 -65.67 330.96 0.16 -65.51 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 0.94 Total: 9.65 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.02 Total: -7.40 kcal Atomic # 7 Polarization: -99.40 SS G_CDS: -6.21 Total: -105.62 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -1.61 Total: -9.78 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -65.67 0.16 -65.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064344390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.508 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds