Wall clock time and date at job start Mon Mar 30 2020 01:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46909 * 2 1 4 4 C 1.50703 * 109.47093 * 240.00530 * 2 1 3 5 5 O 1.21277 * 119.99977 * 239.99787 * 4 2 1 6 6 N 1.34776 * 120.00012 * 59.99855 * 4 2 1 7 7 C 1.46497 * 120.00166 * 180.02562 * 6 4 2 8 8 C 1.52991 * 109.47395 * 275.00110 * 7 6 4 9 9 C 1.53006 * 109.47413 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46970 * 59.99962 * 9 8 7 11 11 C 1.52997 * 109.47068 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46816 * 300.00280 * 10 9 8 13 13 C 1.52998 * 109.47205 * 60.00318 * 12 10 9 14 14 N 1.46493 * 109.47215 * 120.00307 * 2 1 3 15 15 C 1.46500 * 120.00074 * 60.00062 * 14 2 1 16 16 C 1.36936 * 120.00134 * 239.99601 * 14 2 1 17 17 H 1.08001 * 120.00227 * 338.04454 * 16 14 2 18 18 C 1.38813 * 119.99744 * 157.76274 * 16 14 2 19 19 N 1.31619 * 120.00362 * 348.28965 * 18 16 14 20 20 Si 1.86808 * 119.99701 * 168.28542 * 18 16 14 21 21 H 1.48502 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46915 * 120.00294 * 20 18 16 23 23 H 1.48502 * 109.47046 * 240.00119 * 20 18 16 24 24 H 1.08999 * 109.47150 * 59.99366 * 1 2 3 25 25 H 1.08996 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46786 * 299.99566 * 1 2 3 27 27 H 0.97005 * 120.00234 * 359.97438 * 6 4 2 28 28 H 1.09008 * 109.47142 * 35.00122 * 7 6 4 29 29 H 1.09005 * 109.47370 * 299.99762 * 8 7 6 30 30 H 1.08997 * 109.47394 * 59.99826 * 8 7 6 31 31 H 1.08995 * 109.46987 * 300.00188 * 9 8 7 32 32 H 1.08997 * 109.47268 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46991 * 59.99758 * 10 9 8 34 34 H 1.08998 * 109.46757 * 180.02562 * 11 10 9 35 35 H 1.08997 * 109.47157 * 299.99864 * 11 10 9 36 36 H 1.08995 * 109.46999 * 60.00157 * 11 10 9 37 37 H 1.08998 * 109.46914 * 299.99525 * 12 10 9 38 38 H 1.09009 * 109.46501 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.46631 * 179.97438 * 13 12 10 40 40 H 1.08995 * 109.47357 * 59.99589 * 13 12 10 41 41 H 1.08993 * 109.47481 * 264.80960 * 15 14 2 42 42 H 1.09006 * 109.46659 * 24.81097 * 15 14 2 43 43 H 1.09000 * 109.47174 * 144.80674 * 15 14 2 44 44 H 0.97000 * 120.00133 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6963 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9405 -3.6508 8 6 3.5972 -0.4357 -3.9949 9 6 4.1069 -1.1577 -5.2440 10 6 3.1629 -0.8787 -6.4152 11 6 3.6723 -1.6011 -7.6640 12 6 1.7602 -1.3835 -6.0710 13 6 1.2505 -0.6615 -4.8221 14 7 2.0183 -0.6906 1.1961 15 6 1.6644 -2.0932 1.4278 16 6 2.8057 -0.0252 2.0975 17 1 3.3558 0.8518 1.7899 18 6 2.8922 -0.4746 3.4080 19 7 2.0529 -1.3885 3.8471 20 14 4.1999 0.2176 4.5483 21 1 5.0111 1.2243 3.8177 22 1 3.5474 0.8615 5.7165 23 1 5.0804 -0.8825 5.0172 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.1487 0.5387 -2.5436 28 1 2.2308 -2.0134 -3.4615 29 1 3.5610 0.6371 -4.1844 30 1 4.2698 -0.6349 -3.1607 31 1 4.1432 -2.2304 -5.0542 32 1 5.1061 -0.7977 -5.4894 33 1 3.1265 0.1941 -6.6050 34 1 3.0000 -1.4019 -8.4985 35 1 4.6717 -1.2418 -7.9094 36 1 3.7082 -2.6737 -7.4740 37 1 1.7965 -2.4562 -5.8813 38 1 1.0877 -1.1851 -6.9058 39 1 0.2510 -1.0209 -4.5773 40 1 1.2142 0.4112 -5.0119 41 1 0.7898 -2.1450 2.0762 42 1 1.4396 -2.5733 0.4754 43 1 2.5006 -2.6050 1.9042 44 1 2.1131 -1.7022 4.7630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:41 Heat of formation + Delta-G solvation = -39.472544 kcal Electronic energy + Delta-G solvation = -21468.553102 eV Core-core repulsion = 18420.544948 eV Total energy + Delta-G solvation = -3048.008154 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.74332 -38.22617 -35.39232 -34.23912 -32.17675 -30.91070 -30.81728 -28.91061 -26.04331 -25.80540 -23.95160 -22.81691 -21.97359 -20.75227 -20.05967 -19.03594 -16.87177 -16.42150 -15.81440 -15.04168 -14.82859 -14.41102 -14.34322 -14.15249 -13.67811 -13.62091 -13.03631 -12.77078 -12.57299 -12.36132 -12.29002 -12.27998 -11.70429 -11.60099 -11.25465 -11.20126 -11.00987 -10.82442 -10.77808 -10.71714 -10.54780 -10.39991 -10.24884 -10.16356 -9.95150 -9.80293 -8.95566 -8.56464 -8.44584 -6.70107 -5.65267 -3.11628 3.41705 3.43352 3.48768 3.51099 3.64666 4.54300 4.56166 4.57044 4.75190 4.97002 5.10883 5.28981 5.35507 5.40921 5.43019 5.44883 5.48401 5.52685 5.60249 5.66577 5.70222 5.79779 5.90798 5.98040 6.02681 6.03402 6.06543 6.14536 6.17870 6.29300 6.35846 6.41737 6.59565 6.88524 6.94982 7.07725 7.62350 7.81720 7.92447 8.05515 8.44515 8.98254 9.29929 9.91494 10.39951 11.38739 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.004054 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.026670 B = 6904.475355 C = 7295.737129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.158 3.842 3 H 0.086 0.914 4 C 0.492 3.508 5 O -0.526 6.526 6 N -0.741 5.741 7 C 0.146 3.854 8 C -0.129 4.129 9 C -0.111 4.111 10 C -0.094 4.094 11 C -0.147 4.147 12 C -0.110 4.110 13 C -0.125 4.125 14 N -0.574 5.574 15 C 0.172 3.828 16 C -0.255 4.255 17 H 0.068 0.932 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.906 3.094 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.065 0.935 27 H 0.393 0.607 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.025 0.975 42 H 0.006 0.994 43 H 0.040 0.960 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 2.909 -20.726 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.044 3.956 3 H 0.104 0.896 4 C 0.278 3.722 5 O -0.399 6.399 6 N -0.395 5.395 7 C 0.041 3.959 8 C -0.168 4.168 9 C -0.149 4.149 10 C -0.112 4.112 11 C -0.205 4.205 12 C -0.148 4.148 13 C -0.163 4.163 14 N -0.294 5.294 15 C 0.028 3.972 16 C -0.385 4.385 17 H 0.085 0.915 18 C -0.195 4.195 19 N -0.549 5.549 20 Si 0.737 3.263 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.226 0.774 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.024 0.976 43 H 0.059 0.941 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.634 2.063 -20.390 20.559 hybrid contribution 0.471 0.682 0.608 1.028 sum -1.163 2.745 -19.782 20.005 Atomic orbital electron populations 1.22224 0.96429 1.01731 1.00894 1.20251 0.93340 0.95999 0.85971 0.89575 1.22731 0.79604 0.85075 0.84830 1.90622 1.36783 1.26095 1.86426 1.46419 1.55000 1.32477 1.05557 1.20825 0.92677 0.98100 0.84331 1.21919 0.97160 0.99829 0.97866 1.21557 0.98341 1.00923 0.94104 1.21176 0.95019 1.00103 0.94923 1.21830 1.00797 1.00619 0.97229 1.21537 0.95984 1.00338 0.96932 1.21795 0.98974 1.00949 0.94587 1.43646 1.57843 1.08535 1.19379 1.20717 0.99274 0.82829 0.94417 1.19253 1.19527 1.10436 0.89265 0.91464 1.24976 0.98617 0.99307 0.96580 1.70109 1.36344 1.32773 1.15713 0.86155 0.81272 0.78236 0.80678 1.20359 1.21746 1.21603 0.93854 0.92965 0.91546 0.77353 0.90015 0.92145 0.91263 0.91808 0.92014 0.91288 0.92883 0.92803 0.92673 0.91733 0.91829 0.91438 0.91648 0.95651 0.97595 0.94142 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.09 37.16 0.34 -2.36 16 2 C 0.16 3.29 3.12 -69.09 -0.22 3.07 16 3 H 0.09 1.70 7.86 -51.93 -0.41 1.29 16 4 C 0.49 9.71 6.82 -10.98 -0.07 9.63 16 5 O -0.53 -12.63 14.27 5.56 0.08 -12.55 16 6 N -0.74 -10.71 4.97 -53.81 -0.27 -10.98 16 7 C 0.15 1.90 2.45 -67.94 -0.17 1.73 16 8 C -0.13 -1.63 5.49 -26.73 -0.15 -1.77 16 9 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 10 C -0.09 -0.81 2.72 -90.62 -0.25 -1.05 16 11 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 12 C -0.11 -0.95 5.20 -26.73 -0.14 -1.08 16 13 C -0.12 -1.20 5.39 -26.73 -0.14 -1.35 16 14 N -0.57 -15.16 2.59 -174.82 -0.45 -15.62 16 15 C 0.17 4.66 7.46 59.85 0.45 5.10 16 16 C -0.26 -7.28 9.60 -15.06 -0.14 -7.42 16 17 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 18 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 19 N -0.90 -27.16 10.59 55.49 0.59 -26.57 16 20 Si 0.91 22.49 29.57 -169.99 -5.03 17.46 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 24 H 0.04 0.58 7.56 -51.93 -0.39 0.19 16 25 H 0.05 0.97 7.67 -51.93 -0.40 0.57 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.39 4.55 8.02 -40.82 -0.33 4.22 16 28 H 0.08 1.28 7.58 -51.92 -0.39 0.88 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.03 0.71 7.36 -51.93 -0.38 0.33 16 42 H 0.01 0.14 6.43 -51.93 -0.33 -0.19 16 43 H 0.04 1.20 7.26 -51.93 -0.38 0.82 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 341.90 15.07 5.15 5.15 Total: -1.00 -32.87 341.90 -8.36 -41.23 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.05 Total: -0.57 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.38 Total: 2.45 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.13 Total: -53.16 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.87 -8.36 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.757 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds