Wall clock time and date at job start Mon Mar 30 2020 01:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46909 * 2 1 4 4 C 1.50703 * 109.47093 * 240.00530 * 2 1 3 5 5 O 1.21277 * 119.99977 * 239.99787 * 4 2 1 6 6 N 1.34776 * 120.00012 * 59.99855 * 4 2 1 7 7 C 1.46497 * 120.00166 * 180.02562 * 6 4 2 8 8 C 1.52991 * 109.47395 * 275.00110 * 7 6 4 9 9 C 1.53006 * 109.47413 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46970 * 59.99962 * 9 8 7 11 11 C 1.52997 * 109.47068 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.46816 * 300.00280 * 10 9 8 13 13 C 1.52998 * 109.47205 * 60.00318 * 12 10 9 14 14 N 1.46493 * 109.47215 * 120.00307 * 2 1 3 15 15 C 1.46500 * 120.00074 * 60.00062 * 14 2 1 16 16 C 1.36936 * 120.00134 * 239.99601 * 14 2 1 17 17 H 1.08001 * 120.00227 * 338.04454 * 16 14 2 18 18 C 1.38813 * 119.99744 * 157.76274 * 16 14 2 19 19 N 1.31619 * 120.00362 * 348.28965 * 18 16 14 20 20 Si 1.86808 * 119.99701 * 168.28542 * 18 16 14 21 21 H 1.48502 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48495 * 109.46915 * 120.00294 * 20 18 16 23 23 H 1.48502 * 109.47046 * 240.00119 * 20 18 16 24 24 H 1.08999 * 109.47150 * 59.99366 * 1 2 3 25 25 H 1.08996 * 109.47298 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46786 * 299.99566 * 1 2 3 27 27 H 0.97005 * 120.00234 * 359.97438 * 6 4 2 28 28 H 1.09008 * 109.47142 * 35.00122 * 7 6 4 29 29 H 1.09005 * 109.47370 * 299.99762 * 8 7 6 30 30 H 1.08997 * 109.47394 * 59.99826 * 8 7 6 31 31 H 1.08995 * 109.46987 * 300.00188 * 9 8 7 32 32 H 1.08997 * 109.47268 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46991 * 59.99758 * 10 9 8 34 34 H 1.08998 * 109.46757 * 180.02562 * 11 10 9 35 35 H 1.08997 * 109.47157 * 299.99864 * 11 10 9 36 36 H 1.08995 * 109.46999 * 60.00157 * 11 10 9 37 37 H 1.08998 * 109.46914 * 299.99525 * 12 10 9 38 38 H 1.09009 * 109.46501 * 180.02562 * 12 10 9 39 39 H 1.09002 * 109.46631 * 179.97438 * 13 12 10 40 40 H 1.08995 * 109.47357 * 59.99589 * 13 12 10 41 41 H 1.08993 * 109.47481 * 264.80960 * 15 14 2 42 42 H 1.09006 * 109.46659 * 24.81097 * 15 14 2 43 43 H 1.09000 * 109.47174 * 144.80674 * 15 14 2 44 44 H 0.97000 * 120.00133 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6963 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 2.1945 -0.9405 -3.6508 8 6 3.5972 -0.4357 -3.9949 9 6 4.1069 -1.1577 -5.2440 10 6 3.1629 -0.8787 -6.4152 11 6 3.6723 -1.6011 -7.6640 12 6 1.7602 -1.3835 -6.0710 13 6 1.2505 -0.6615 -4.8221 14 7 2.0183 -0.6906 1.1961 15 6 1.6644 -2.0932 1.4278 16 6 2.8057 -0.0252 2.0975 17 1 3.3558 0.8518 1.7899 18 6 2.8922 -0.4746 3.4080 19 7 2.0529 -1.3885 3.8471 20 14 4.1999 0.2176 4.5483 21 1 5.0111 1.2243 3.8177 22 1 3.5474 0.8615 5.7165 23 1 5.0804 -0.8825 5.0172 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.1487 0.5387 -2.5436 28 1 2.2308 -2.0134 -3.4615 29 1 3.5610 0.6371 -4.1844 30 1 4.2698 -0.6349 -3.1607 31 1 4.1432 -2.2304 -5.0542 32 1 5.1061 -0.7977 -5.4894 33 1 3.1265 0.1941 -6.6050 34 1 3.0000 -1.4019 -8.4985 35 1 4.6717 -1.2418 -7.9094 36 1 3.7082 -2.6737 -7.4740 37 1 1.7965 -2.4562 -5.8813 38 1 1.0877 -1.1851 -6.9058 39 1 0.2510 -1.0209 -4.5773 40 1 1.2142 0.4112 -5.0119 41 1 0.7898 -2.1450 2.0762 42 1 1.4396 -2.5733 0.4754 43 1 2.5006 -2.6050 1.9042 44 1 2.1131 -1.7022 4.7630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972301.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:40 Heat of formation + Delta-G solvation = -60.331888 kcal Electronic energy + Delta-G solvation = -21469.457631 eV Core-core repulsion = 18420.544948 eV Total energy + Delta-G solvation = -3048.912683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08515 -39.39883 -37.24379 -35.53262 -34.02548 -32.15958 -31.70602 -30.61295 -28.05663 -26.90982 -25.66694 -23.76187 -23.48679 -21.91095 -21.13028 -20.37258 -18.92528 -17.79007 -17.40347 -16.72511 -16.21233 -15.78580 -15.27681 -15.19560 -15.08220 -15.05575 -14.61194 -14.27468 -14.05721 -13.59503 -13.21253 -13.14913 -13.12110 -13.05172 -12.82251 -12.68092 -12.52332 -12.35047 -12.19600 -12.05907 -11.99702 -11.89024 -11.80225 -11.58052 -11.22765 -11.04573 -10.81263 -10.44834 -9.89393 -8.81394 -7.83142 -5.32281 1.44333 1.47041 1.57071 1.85232 2.29035 2.53941 3.31453 3.61001 3.72462 3.79257 3.92615 4.12746 4.17321 4.24924 4.36665 4.45016 4.47828 4.51471 4.59412 4.64170 4.81668 4.83033 4.87310 4.93022 5.00696 5.03138 5.06198 5.15873 5.19401 5.23215 5.30602 5.36591 5.39555 5.41582 5.46288 5.59300 5.60378 5.65959 5.72205 6.27775 6.74276 7.11603 7.49114 7.83328 8.27289 9.20375 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.004054 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.026670 B = 6904.475355 C = 7295.737129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.148 3.852 3 H 0.099 0.901 4 C 0.496 3.504 5 O -0.577 6.577 6 N -0.716 5.716 7 C 0.144 3.856 8 C -0.125 4.125 9 C -0.109 4.109 10 C -0.089 4.089 11 C -0.146 4.146 12 C -0.109 4.109 13 C -0.115 4.115 14 N -0.594 5.594 15 C 0.199 3.801 16 C -0.267 4.267 17 H 0.073 0.927 18 C -0.054 4.054 19 N -0.937 5.937 20 Si 0.973 3.027 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.295 1.295 24 H 0.095 0.905 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.413 0.587 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.028 0.972 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.007 0.993 42 H 0.014 0.986 43 H 0.002 0.998 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 5.006 -23.276 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.037 3.963 3 H 0.117 0.883 4 C 0.282 3.718 5 O -0.455 6.455 6 N -0.370 5.370 7 C 0.039 3.961 8 C -0.163 4.163 9 C -0.147 4.147 10 C -0.107 4.107 11 C -0.203 4.203 12 C -0.147 4.147 13 C -0.153 4.153 14 N -0.315 5.315 15 C 0.054 3.946 16 C -0.397 4.397 17 H 0.091 0.909 18 C -0.249 4.249 19 N -0.584 5.584 20 Si 0.801 3.199 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.222 1.222 24 H 0.113 0.887 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.249 0.751 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.025 0.975 42 H 0.033 0.967 43 H 0.021 0.979 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.298 4.224 -23.021 23.518 hybrid contribution 0.669 0.052 1.282 1.447 sum -1.629 4.276 -21.740 22.216 Atomic orbital electron populations 1.22071 0.93556 1.01465 1.02852 1.20590 0.95366 0.96083 0.84303 0.88294 1.22314 0.79087 0.84360 0.86082 1.90613 1.39248 1.28400 1.87265 1.46116 1.53878 1.32512 1.04488 1.20963 0.94148 0.96184 0.84759 1.21856 0.95970 1.01047 0.97457 1.21545 0.99365 0.99741 0.94044 1.21154 0.94374 1.00955 0.94248 1.21812 1.01326 1.00142 0.97045 1.21557 0.96397 0.99635 0.97089 1.21756 0.98019 1.02503 0.93058 1.43812 1.58453 1.08303 1.20981 1.20272 0.96770 0.83742 0.93839 1.19623 1.19811 1.10423 0.89838 0.90912 1.25809 1.00757 1.00049 0.98238 1.70263 1.38000 1.34289 1.15824 0.85118 0.78620 0.77496 0.78665 1.18968 1.21172 1.22240 0.88685 0.94323 0.92711 0.75059 0.93128 0.90506 0.95310 0.93238 0.91398 0.90100 0.91492 0.92503 0.93221 0.92732 0.89544 0.90824 0.89464 0.97476 0.96722 0.97931 0.94259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.09 71.98 0.65 -4.03 16 2 C 0.15 6.05 3.12 44.25 0.14 6.19 16 3 H 0.10 3.75 7.86 -2.39 -0.02 3.74 16 4 C 0.50 19.40 6.82 87.66 0.60 20.00 16 5 O -0.58 -28.56 14.27 -3.02 -0.04 -28.60 16 6 N -0.72 -19.39 4.97 -442.54 -2.20 -21.59 16 7 C 0.14 3.57 2.45 44.99 0.11 3.68 16 8 C -0.12 -3.04 5.49 30.59 0.17 -2.87 16 9 C -0.11 -2.16 5.20 30.60 0.16 -2.00 16 10 C -0.09 -1.28 2.72 -10.79 -0.03 -1.31 16 11 C -0.15 -1.81 9.19 71.98 0.66 -1.14 16 12 C -0.11 -1.54 5.20 30.59 0.16 -1.38 16 13 C -0.12 -1.83 5.39 30.59 0.16 -1.67 16 14 N -0.59 -31.97 2.59 -706.99 -1.83 -33.80 16 15 C 0.20 11.22 7.46 127.77 0.95 12.17 16 16 C -0.27 -15.41 9.60 84.03 0.81 -14.60 16 17 H 0.07 4.01 7.81 -2.91 -0.02 3.99 16 18 C -0.05 -3.14 5.13 84.86 0.44 -2.71 16 19 N -0.94 -57.95 10.59 21.65 0.23 -57.72 16 20 Si 0.97 46.86 29.57 68.60 2.03 48.89 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 24 H 0.09 2.17 7.56 -2.39 -0.02 2.15 16 25 H 0.04 1.39 7.67 -2.39 -0.02 1.37 16 26 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.41 8.03 8.02 -92.70 -0.74 7.28 16 28 H 0.05 1.60 7.58 -2.38 -0.02 1.58 16 29 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.01 0.42 7.36 -2.39 -0.02 0.40 16 42 H 0.01 0.77 6.43 -2.38 -0.02 0.75 16 43 H 0.00 0.12 7.26 -2.39 -0.02 0.10 16 44 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -74.58 341.90 3.37 -71.21 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.21 Total: 11.30 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 4.98 Total: 10.32 kcal Atomic # 7 Polarization: -109.32 SS G_CDS: -3.80 Total: -113.12 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -0.04 Total: -28.60 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -74.58 3.37 -71.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972301.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.874 kcal (2) G-P(sol) polarization free energy of solvation -74.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds