Wall clock time and date at job start Mon Mar 30 2020 01:34:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09000 * 109.46912 * 2 1
4 4 C 1.50694 * 109.47364 * 120.00538 * 2 1 3
5 5 O 1.21281 * 120.00434 * 119.99521 * 4 2 1
6 6 N 1.34781 * 119.99624 * 299.99983 * 4 2 1
7 7 C 1.46507 * 119.99951 * 179.97438 * 6 4 2
8 8 C 1.52993 * 109.46975 * 275.00216 * 7 6 4
9 9 C 1.53007 * 109.47089 * 179.97438 * 8 7 6
10 10 C 1.53006 * 109.46820 * 59.99543 * 9 8 7
11 11 C 1.52998 * 109.46859 * 179.97438 * 10 9 8
12 12 C 1.52998 * 109.47086 * 300.00363 * 10 9 8
13 13 C 1.52995 * 109.46728 * 154.99904 * 7 6 4
14 14 N 1.46502 * 109.46923 * 240.00465 * 2 1 3
15 15 C 1.46499 * 119.99931 * 299.99687 * 14 2 1
16 16 C 1.36942 * 119.99883 * 120.00147 * 14 2 1
17 17 H 1.07992 * 119.99759 * 336.39867 * 16 14 2
18 18 C 1.38815 * 119.99656 * 156.40308 * 16 14 2
19 19 N 1.31618 * 120.00066 * 330.48071 * 18 16 14
20 20 Si 1.86800 * 119.99672 * 150.76457 * 18 16 14
21 21 H 1.48504 * 109.46943 * 179.72314 * 20 18 16
22 22 H 1.48500 * 109.47084 * 299.71603 * 20 18 16
23 23 H 1.48500 * 109.47264 * 59.72167 * 20 18 16
24 24 H 1.08996 * 109.47514 * 299.99824 * 1 2 3
25 25 H 1.09006 * 109.47301 * 60.00033 * 1 2 3
26 26 H 1.09006 * 109.47177 * 179.97438 * 1 2 3
27 27 H 0.96998 * 120.00350 * 0.02562 * 6 4 2
28 28 H 1.09002 * 109.46688 * 35.00190 * 7 6 4
29 29 H 1.09002 * 109.47392 * 299.99544 * 8 7 6
30 30 H 1.08996 * 109.47739 * 60.00174 * 8 7 6
31 31 H 1.09002 * 109.46730 * 300.00070 * 9 8 7
32 32 H 1.08993 * 109.47015 * 179.97438 * 9 8 7
33 33 H 1.08998 * 109.46573 * 60.00842 * 10 9 8
34 34 H 1.08998 * 109.47101 * 179.97438 * 11 10 9
35 35 H 1.08993 * 109.47625 * 300.00704 * 11 10 9
36 36 H 1.09009 * 109.46967 * 60.00650 * 11 10 9
37 37 H 1.08992 * 109.47428 * 299.99546 * 12 10 9
38 38 H 1.09009 * 109.46668 * 180.02562 * 12 10 9
39 39 H 1.08993 * 109.47681 * 299.99830 * 13 7 6
40 40 H 1.09002 * 109.47302 * 60.00662 * 13 7 6
41 41 H 1.08997 * 109.47473 * 272.70278 * 15 14 2
42 42 H 1.08993 * 109.47355 * 32.70582 * 15 14 2
43 43 H 1.09003 * 109.47161 * 152.70287 * 15 14 2
44 44 H 0.97001 * 119.99888 * 353.98916 * 19 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7105 1.2303
5 8 2.7296 -1.6966 1.1190
6 7 1.7068 -0.2501 2.4545
7 6 2.1947 -0.9411 3.6507
8 6 1.2502 -2.0946 3.9941
9 6 1.7601 -2.8167 5.2430
10 6 1.8123 -1.8340 6.4146
11 6 2.3215 -2.5562 7.6636
12 6 2.7568 -0.6805 6.0710
13 6 2.2463 0.0419 4.8219
14 7 2.0183 -0.6905 -1.1963
15 6 1.6644 -2.0931 -1.4281
16 6 2.8056 -0.0249 -2.0976
17 1 2.7649 1.0525 -2.1578
18 6 3.6559 -0.7353 -2.9339
19 7 4.1595 -1.8849 -2.5376
20 14 4.0914 -0.0557 -4.6185
21 1 5.0139 -0.9938 -5.3073
22 1 2.8537 0.1019 -5.4238
23 1 4.7529 1.2648 -4.4637
24 1 -0.3634 0.5138 0.8899
25 1 -0.3634 0.5138 -0.8900
26 1 -0.3634 -1.0277 -0.0005
27 1 1.1488 0.5384 2.5436
28 1 3.1938 -1.3336 3.4613
29 1 0.2510 -1.7021 4.1834
30 1 1.2133 -2.7949 3.1597
31 1 2.7591 -3.2092 5.0532
32 1 1.0869 -3.6382 5.4879
33 1 0.8132 -1.4416 6.6043
34 1 2.3591 -1.8561 8.4981
35 1 1.6484 -3.3778 7.9081
36 1 3.3205 -2.9491 7.4742
37 1 3.7557 -1.0730 5.8814
38 1 2.7942 0.0194 6.9060
39 1 2.9192 0.8637 4.5773
40 1 1.2472 0.4344 5.0113
41 1 2.3893 -2.7377 -0.9312
42 1 0.6699 -2.2880 -1.0270
43 1 1.6706 -2.2972 -2.4989
44 1 4.0079 -2.1940 -1.6308
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000068972302.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:34:44
Heat of formation + Delta-G solvation = -42.604322 kcal
Electronic energy + Delta-G solvation = -21613.936665 eV
Core-core repulsion = 18565.792707 eV
Total energy + Delta-G solvation = -3048.143958 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-39.72676 -38.22604 -35.60083 -34.22491 -32.32280 -30.88348 -30.80482 -28.80651
-26.11683 -25.90221 -23.83002 -22.81920 -21.86351 -20.72670 -20.04198 -19.05972
-17.39100 -16.49633 -15.87876 -14.99009 -14.52645 -14.44226 -14.36855 -14.22152
-13.57455 -13.48974 -13.25059 -12.98611 -12.69429 -12.49678 -12.28413 -12.27276
-11.84376 -11.68824 -11.37444 -11.21363 -10.99443 -10.84268 -10.77308 -10.75743
-10.49157 -10.41270 -10.33524 -10.16379 -9.96675 -9.50624 -8.90946 -8.55557
-8.23999 -6.84062 -5.97152 -3.11717 3.45773 3.54203 3.55797 3.67896
3.76676 4.56661 4.57596 4.65803 4.75773 4.98149 5.11370 5.27156
5.29741 5.37143 5.42017 5.44386 5.47138 5.51613 5.56925 5.66839
5.69753 5.80194 5.87455 5.91658 5.92800 6.02736 6.04012 6.14127
6.15110 6.19909 6.34233 6.41563 6.49424 6.60177 6.77722 6.97936
7.11932 7.40960 7.96424 8.12062 8.65724 8.99760 9.22801 9.93793
10.31739 11.30331
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.035739 B = 0.004086 C = 0.004006
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 783.262837 B = 6851.155741 C = 6987.131507
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.154 3.846
3 H 0.086 0.914
4 C 0.487 3.513
5 O -0.523 6.523
6 N -0.742 5.742
7 C 0.144 3.856
8 C -0.127 4.127
9 C -0.112 4.112
10 C -0.093 4.093
11 C -0.147 4.147
12 C -0.110 4.110
13 C -0.125 4.125
14 N -0.573 5.573
15 C 0.138 3.862
16 C -0.369 4.369
17 H 0.059 0.941
18 C -0.017 4.017
19 N -0.905 5.905
20 Si 1.062 2.938
21 H -0.286 1.286
22 H -0.293 1.293
23 H -0.293 1.293
24 H 0.047 0.953
25 H 0.064 0.936
26 H 0.052 0.948
27 H 0.391 0.609
28 H 0.082 0.918
29 H 0.059 0.941
30 H 0.067 0.933
31 H 0.064 0.936
32 H 0.061 0.939
33 H 0.068 0.932
34 H 0.052 0.948
35 H 0.053 0.947
36 H 0.054 0.946
37 H 0.064 0.936
38 H 0.063 0.937
39 H 0.067 0.933
40 H 0.064 0.936
41 H 0.027 0.973
42 H 0.011 0.989
43 H 0.047 0.953
44 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.754 3.100 17.904 19.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.041 3.959
3 H 0.104 0.896
4 C 0.273 3.727
5 O -0.396 6.396
6 N -0.396 5.396
7 C 0.039 3.961
8 C -0.166 4.166
9 C -0.150 4.150
10 C -0.112 4.112
11 C -0.205 4.205
12 C -0.148 4.148
13 C -0.163 4.163
14 N -0.294 5.294
15 C -0.006 4.006
16 C -0.497 4.497
17 H 0.077 0.923
18 C -0.222 4.222
19 N -0.543 5.543
20 Si 0.892 3.108
21 H -0.212 1.212
22 H -0.220 1.220
23 H -0.221 1.221
24 H 0.066 0.934
25 H 0.083 0.917
26 H 0.071 0.929
27 H 0.224 0.776
28 H 0.100 0.900
29 H 0.078 0.922
30 H 0.086 0.914
31 H 0.082 0.918
32 H 0.080 0.920
33 H 0.087 0.913
34 H 0.071 0.929
35 H 0.072 0.928
36 H 0.073 0.927
37 H 0.083 0.917
38 H 0.082 0.918
39 H 0.085 0.915
40 H 0.083 0.917
41 H 0.045 0.955
42 H 0.029 0.971
43 H 0.066 0.934
44 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges -6.378 2.002 16.311 17.628
hybrid contribution -0.994 0.746 1.659 2.073
sum -7.373 2.748 17.971 19.617
Atomic orbital electron populations
1.22159 0.96389 1.01664 1.01048 1.20557 0.93537 0.96833 0.84944
0.89580 1.23061 0.79676 0.85312 0.84698 1.90640 1.36540 1.26096
1.86335 1.46567 1.55117 1.32306 1.05625 1.20836 0.98617 0.92211
0.84426 1.21899 0.98883 0.97986 0.97792 1.21562 1.01696 0.97591
0.94113 1.21169 0.99336 0.95745 0.94913 1.21832 1.01264 1.00165
0.97217 1.21547 0.99317 0.97036 0.96925 1.21801 1.01685 0.98180
0.94610 1.43865 1.57666 1.09695 1.18131 1.20967 0.95240 0.85176
0.99262 1.19952 1.21715 0.92496 1.15561 0.92313 1.25803 0.93773
0.97777 1.04816 1.70680 1.38612 1.23396 1.21612 0.83591 0.75957
0.75007 0.76242 1.21179 1.22047 1.22051 0.93403 0.91714 0.92926
0.77558 0.90026 0.92237 0.91447 0.91773 0.92031 0.91330 0.92871
0.92797 0.92655 0.91699 0.91824 0.91458 0.91708 0.95516 0.97080
0.93433 0.90897
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.56 9.06 37.16 0.34 -2.22 16
2 C 0.15 3.24 3.13 -69.08 -0.22 3.02 16
3 H 0.09 1.76 7.87 -51.93 -0.41 1.35 16
4 C 0.49 10.02 7.02 -10.99 -0.08 9.94 16
5 O -0.52 -13.22 14.33 5.56 0.08 -13.14 16
6 N -0.74 -11.27 4.97 -53.81 -0.27 -11.54 16
7 C 0.14 2.00 2.45 -67.93 -0.17 1.83 16
8 C -0.13 -1.64 5.49 -26.73 -0.15 -1.79 16
9 C -0.11 -1.21 5.20 -26.72 -0.14 -1.35 16
10 C -0.09 -0.84 2.72 -90.62 -0.25 -1.09 16
11 C -0.15 -1.17 9.19 37.16 0.34 -0.82 16
12 C -0.11 -1.02 5.21 -26.70 -0.14 -1.16 16
13 C -0.12 -1.29 5.40 -26.71 -0.14 -1.44 16
14 N -0.57 -15.00 2.46 -174.82 -0.43 -15.43 16
15 C 0.14 3.61 7.87 59.85 0.47 4.08 16
16 C -0.37 -10.60 9.39 -15.06 -0.14 -10.75 16
17 H 0.06 1.66 7.95 -52.49 -0.42 1.24 16
18 C -0.02 -0.50 4.62 -17.43 -0.08 -0.58 16
19 N -0.90 -28.68 12.72 55.49 0.71 -27.98 16
20 Si 1.06 25.86 30.01 -169.99 -5.10 20.76 16
21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
24 H 0.05 0.62 7.56 -51.93 -0.39 0.23 16
25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16
26 H 0.05 0.92 6.67 -51.93 -0.35 0.57 16
27 H 0.39 4.76 8.02 -40.82 -0.33 4.43 16
28 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16
29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16
30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16
31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16
33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16
34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16
35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16
37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16
39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16
40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
41 H 0.03 0.76 5.79 -51.93 -0.30 0.46 16
42 H 0.01 0.25 6.43 -51.93 -0.33 -0.09 16
43 H 0.05 1.30 7.28 -51.93 -0.38 0.92 16
44 H 0.28 9.22 6.39 -40.82 -0.26 8.96 16
LS Contribution 339.95 15.07 5.12 5.12
Total: -1.00 -33.90 339.95 -8.09 -41.99
By element:
Atomic # 1 Polarization: 10.40 SS G_CDS: -7.85 Total: 2.55 kcal
Atomic # 6 Polarization: -1.98 SS G_CDS: -0.35 Total: -2.33 kcal
Atomic # 7 Polarization: -54.96 SS G_CDS: 0.01 Total: -54.95 kcal
Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal
Atomic # 14 Polarization: 25.86 SS G_CDS: -5.10 Total: 20.76 kcal
Total LS contribution 5.12 Total: 5.12 kcal
Total: -33.90 -8.09 -41.99 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068972302.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.619 kcal
(2) G-P(sol) polarization free energy of solvation -33.897 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.515 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal
(6) G-S(sol) free energy of system = (1) + (5) -42.604 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds