Wall clock time and date at job start Mon Mar 30 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46912 * 2 1 4 4 C 1.50694 * 109.47364 * 120.00538 * 2 1 3 5 5 O 1.21281 * 120.00434 * 119.99521 * 4 2 1 6 6 N 1.34781 * 119.99624 * 299.99983 * 4 2 1 7 7 C 1.46507 * 119.99951 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.46975 * 275.00216 * 7 6 4 9 9 C 1.53007 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46820 * 59.99543 * 9 8 7 11 11 C 1.52998 * 109.46859 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47086 * 300.00363 * 10 9 8 13 13 C 1.52995 * 109.46728 * 154.99904 * 7 6 4 14 14 N 1.46502 * 109.46923 * 240.00465 * 2 1 3 15 15 C 1.46499 * 119.99931 * 299.99687 * 14 2 1 16 16 C 1.36942 * 119.99883 * 120.00147 * 14 2 1 17 17 H 1.07992 * 119.99759 * 336.39867 * 16 14 2 18 18 C 1.38815 * 119.99656 * 156.40308 * 16 14 2 19 19 N 1.31618 * 120.00066 * 330.48071 * 18 16 14 20 20 Si 1.86800 * 119.99672 * 150.76457 * 18 16 14 21 21 H 1.48504 * 109.46943 * 179.72314 * 20 18 16 22 22 H 1.48500 * 109.47084 * 299.71603 * 20 18 16 23 23 H 1.48500 * 109.47264 * 59.72167 * 20 18 16 24 24 H 1.08996 * 109.47514 * 299.99824 * 1 2 3 25 25 H 1.09006 * 109.47301 * 60.00033 * 1 2 3 26 26 H 1.09006 * 109.47177 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00350 * 0.02562 * 6 4 2 28 28 H 1.09002 * 109.46688 * 35.00190 * 7 6 4 29 29 H 1.09002 * 109.47392 * 299.99544 * 8 7 6 30 30 H 1.08996 * 109.47739 * 60.00174 * 8 7 6 31 31 H 1.09002 * 109.46730 * 300.00070 * 9 8 7 32 32 H 1.08993 * 109.47015 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46573 * 60.00842 * 10 9 8 34 34 H 1.08998 * 109.47101 * 179.97438 * 11 10 9 35 35 H 1.08993 * 109.47625 * 300.00704 * 11 10 9 36 36 H 1.09009 * 109.46967 * 60.00650 * 11 10 9 37 37 H 1.08992 * 109.47428 * 299.99546 * 12 10 9 38 38 H 1.09009 * 109.46668 * 180.02562 * 12 10 9 39 39 H 1.08993 * 109.47681 * 299.99830 * 13 7 6 40 40 H 1.09002 * 109.47302 * 60.00662 * 13 7 6 41 41 H 1.08997 * 109.47473 * 272.70278 * 15 14 2 42 42 H 1.08993 * 109.47355 * 32.70582 * 15 14 2 43 43 H 1.09003 * 109.47161 * 152.70287 * 15 14 2 44 44 H 0.97001 * 119.99888 * 353.98916 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.2502 -2.0946 3.9941 9 6 1.7601 -2.8167 5.2430 10 6 1.8123 -1.8340 6.4146 11 6 2.3215 -2.5562 7.6636 12 6 2.7568 -0.6805 6.0710 13 6 2.2463 0.0419 4.8219 14 7 2.0183 -0.6905 -1.1963 15 6 1.6644 -2.0931 -1.4281 16 6 2.8056 -0.0249 -2.0976 17 1 2.7649 1.0525 -2.1578 18 6 3.6559 -0.7353 -2.9339 19 7 4.1595 -1.8849 -2.5376 20 14 4.0914 -0.0557 -4.6185 21 1 5.0139 -0.9938 -5.3073 22 1 2.8537 0.1019 -5.4238 23 1 4.7529 1.2648 -4.4637 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.1488 0.5384 2.5436 28 1 3.1938 -1.3336 3.4613 29 1 0.2510 -1.7021 4.1834 30 1 1.2133 -2.7949 3.1597 31 1 2.7591 -3.2092 5.0532 32 1 1.0869 -3.6382 5.4879 33 1 0.8132 -1.4416 6.6043 34 1 2.3591 -1.8561 8.4981 35 1 1.6484 -3.3778 7.9081 36 1 3.3205 -2.9491 7.4742 37 1 3.7557 -1.0730 5.8814 38 1 2.7942 0.0194 6.9060 39 1 2.9192 0.8637 4.5773 40 1 1.2472 0.4344 5.0113 41 1 2.3893 -2.7377 -0.9312 42 1 0.6699 -2.2880 -1.0270 43 1 1.6706 -2.2972 -2.4989 44 1 4.0079 -2.1940 -1.6308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:44 Heat of formation + Delta-G solvation = -42.604322 kcal Electronic energy + Delta-G solvation = -21613.936665 eV Core-core repulsion = 18565.792707 eV Total energy + Delta-G solvation = -3048.143958 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.72676 -38.22604 -35.60083 -34.22491 -32.32280 -30.88348 -30.80482 -28.80651 -26.11683 -25.90221 -23.83002 -22.81920 -21.86351 -20.72670 -20.04198 -19.05972 -17.39100 -16.49633 -15.87876 -14.99009 -14.52645 -14.44226 -14.36855 -14.22152 -13.57455 -13.48974 -13.25059 -12.98611 -12.69429 -12.49678 -12.28413 -12.27276 -11.84376 -11.68824 -11.37444 -11.21363 -10.99443 -10.84268 -10.77308 -10.75743 -10.49157 -10.41270 -10.33524 -10.16379 -9.96675 -9.50624 -8.90946 -8.55557 -8.23999 -6.84062 -5.97152 -3.11717 3.45773 3.54203 3.55797 3.67896 3.76676 4.56661 4.57596 4.65803 4.75773 4.98149 5.11370 5.27156 5.29741 5.37143 5.42017 5.44386 5.47138 5.51613 5.56925 5.66839 5.69753 5.80194 5.87455 5.91658 5.92800 6.02736 6.04012 6.14127 6.15110 6.19909 6.34233 6.41563 6.49424 6.60177 6.77722 6.97936 7.11932 7.40960 7.96424 8.12062 8.65724 8.99760 9.22801 9.93793 10.31739 11.30331 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.004086 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.262837 B = 6851.155741 C = 6987.131507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.086 0.914 4 C 0.487 3.513 5 O -0.523 6.523 6 N -0.742 5.742 7 C 0.144 3.856 8 C -0.127 4.127 9 C -0.112 4.112 10 C -0.093 4.093 11 C -0.147 4.147 12 C -0.110 4.110 13 C -0.125 4.125 14 N -0.573 5.573 15 C 0.138 3.862 16 C -0.369 4.369 17 H 0.059 0.941 18 C -0.017 4.017 19 N -0.905 5.905 20 Si 1.062 2.938 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.293 1.293 24 H 0.047 0.953 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.391 0.609 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.027 0.973 42 H 0.011 0.989 43 H 0.047 0.953 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 3.100 17.904 19.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.041 3.959 3 H 0.104 0.896 4 C 0.273 3.727 5 O -0.396 6.396 6 N -0.396 5.396 7 C 0.039 3.961 8 C -0.166 4.166 9 C -0.150 4.150 10 C -0.112 4.112 11 C -0.205 4.205 12 C -0.148 4.148 13 C -0.163 4.163 14 N -0.294 5.294 15 C -0.006 4.006 16 C -0.497 4.497 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.543 5.543 20 Si 0.892 3.108 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.221 1.221 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.224 0.776 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.029 0.971 43 H 0.066 0.934 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.378 2.002 16.311 17.628 hybrid contribution -0.994 0.746 1.659 2.073 sum -7.373 2.748 17.971 19.617 Atomic orbital electron populations 1.22159 0.96389 1.01664 1.01048 1.20557 0.93537 0.96833 0.84944 0.89580 1.23061 0.79676 0.85312 0.84698 1.90640 1.36540 1.26096 1.86335 1.46567 1.55117 1.32306 1.05625 1.20836 0.98617 0.92211 0.84426 1.21899 0.98883 0.97986 0.97792 1.21562 1.01696 0.97591 0.94113 1.21169 0.99336 0.95745 0.94913 1.21832 1.01264 1.00165 0.97217 1.21547 0.99317 0.97036 0.96925 1.21801 1.01685 0.98180 0.94610 1.43865 1.57666 1.09695 1.18131 1.20967 0.95240 0.85176 0.99262 1.19952 1.21715 0.92496 1.15561 0.92313 1.25803 0.93773 0.97777 1.04816 1.70680 1.38612 1.23396 1.21612 0.83591 0.75957 0.75007 0.76242 1.21179 1.22047 1.22051 0.93403 0.91714 0.92926 0.77558 0.90026 0.92237 0.91447 0.91773 0.92031 0.91330 0.92871 0.92797 0.92655 0.91699 0.91824 0.91458 0.91708 0.95516 0.97080 0.93433 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.06 37.16 0.34 -2.22 16 2 C 0.15 3.24 3.13 -69.08 -0.22 3.02 16 3 H 0.09 1.76 7.87 -51.93 -0.41 1.35 16 4 C 0.49 10.02 7.02 -10.99 -0.08 9.94 16 5 O -0.52 -13.22 14.33 5.56 0.08 -13.14 16 6 N -0.74 -11.27 4.97 -53.81 -0.27 -11.54 16 7 C 0.14 2.00 2.45 -67.93 -0.17 1.83 16 8 C -0.13 -1.64 5.49 -26.73 -0.15 -1.79 16 9 C -0.11 -1.21 5.20 -26.72 -0.14 -1.35 16 10 C -0.09 -0.84 2.72 -90.62 -0.25 -1.09 16 11 C -0.15 -1.17 9.19 37.16 0.34 -0.82 16 12 C -0.11 -1.02 5.21 -26.70 -0.14 -1.16 16 13 C -0.12 -1.29 5.40 -26.71 -0.14 -1.44 16 14 N -0.57 -15.00 2.46 -174.82 -0.43 -15.43 16 15 C 0.14 3.61 7.87 59.85 0.47 4.08 16 16 C -0.37 -10.60 9.39 -15.06 -0.14 -10.75 16 17 H 0.06 1.66 7.95 -52.49 -0.42 1.24 16 18 C -0.02 -0.50 4.62 -17.43 -0.08 -0.58 16 19 N -0.90 -28.68 12.72 55.49 0.71 -27.98 16 20 Si 1.06 25.86 30.01 -169.99 -5.10 20.76 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.05 0.62 7.56 -51.93 -0.39 0.23 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.92 6.67 -51.93 -0.35 0.57 16 27 H 0.39 4.76 8.02 -40.82 -0.33 4.43 16 28 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.76 5.79 -51.93 -0.30 0.46 16 42 H 0.01 0.25 6.43 -51.93 -0.33 -0.09 16 43 H 0.05 1.30 7.28 -51.93 -0.38 0.92 16 44 H 0.28 9.22 6.39 -40.82 -0.26 8.96 16 LS Contribution 339.95 15.07 5.12 5.12 Total: -1.00 -33.90 339.95 -8.09 -41.99 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.85 Total: 2.55 kcal Atomic # 6 Polarization: -1.98 SS G_CDS: -0.35 Total: -2.33 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.01 Total: -54.95 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.08 Total: -13.14 kcal Atomic # 14 Polarization: 25.86 SS G_CDS: -5.10 Total: 20.76 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.90 -8.09 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.619 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds