Wall clock time and date at job start Mon Mar 30 2020 01:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46912 * 2 1 4 4 C 1.50694 * 109.47364 * 120.00538 * 2 1 3 5 5 O 1.21281 * 120.00434 * 119.99521 * 4 2 1 6 6 N 1.34781 * 119.99624 * 299.99983 * 4 2 1 7 7 C 1.46507 * 119.99951 * 179.97438 * 6 4 2 8 8 C 1.52993 * 109.46975 * 275.00216 * 7 6 4 9 9 C 1.53007 * 109.47089 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46820 * 59.99543 * 9 8 7 11 11 C 1.52998 * 109.46859 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47086 * 300.00363 * 10 9 8 13 13 C 1.52995 * 109.46728 * 154.99904 * 7 6 4 14 14 N 1.46502 * 109.46923 * 240.00465 * 2 1 3 15 15 C 1.46499 * 119.99931 * 299.99687 * 14 2 1 16 16 C 1.36942 * 119.99883 * 120.00147 * 14 2 1 17 17 H 1.07992 * 119.99759 * 336.39867 * 16 14 2 18 18 C 1.38815 * 119.99656 * 156.40308 * 16 14 2 19 19 N 1.31618 * 120.00066 * 330.48071 * 18 16 14 20 20 Si 1.86800 * 119.99672 * 150.76457 * 18 16 14 21 21 H 1.48504 * 109.46943 * 179.72314 * 20 18 16 22 22 H 1.48500 * 109.47084 * 299.71603 * 20 18 16 23 23 H 1.48500 * 109.47264 * 59.72167 * 20 18 16 24 24 H 1.08996 * 109.47514 * 299.99824 * 1 2 3 25 25 H 1.09006 * 109.47301 * 60.00033 * 1 2 3 26 26 H 1.09006 * 109.47177 * 179.97438 * 1 2 3 27 27 H 0.96998 * 120.00350 * 0.02562 * 6 4 2 28 28 H 1.09002 * 109.46688 * 35.00190 * 7 6 4 29 29 H 1.09002 * 109.47392 * 299.99544 * 8 7 6 30 30 H 1.08996 * 109.47739 * 60.00174 * 8 7 6 31 31 H 1.09002 * 109.46730 * 300.00070 * 9 8 7 32 32 H 1.08993 * 109.47015 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.46573 * 60.00842 * 10 9 8 34 34 H 1.08998 * 109.47101 * 179.97438 * 11 10 9 35 35 H 1.08993 * 109.47625 * 300.00704 * 11 10 9 36 36 H 1.09009 * 109.46967 * 60.00650 * 11 10 9 37 37 H 1.08992 * 109.47428 * 299.99546 * 12 10 9 38 38 H 1.09009 * 109.46668 * 180.02562 * 12 10 9 39 39 H 1.08993 * 109.47681 * 299.99830 * 13 7 6 40 40 H 1.09002 * 109.47302 * 60.00662 * 13 7 6 41 41 H 1.08997 * 109.47473 * 272.70278 * 15 14 2 42 42 H 1.08993 * 109.47355 * 32.70582 * 15 14 2 43 43 H 1.09003 * 109.47161 * 152.70287 * 15 14 2 44 44 H 0.97001 * 119.99888 * 353.98916 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1947 -0.9411 3.6507 8 6 1.2502 -2.0946 3.9941 9 6 1.7601 -2.8167 5.2430 10 6 1.8123 -1.8340 6.4146 11 6 2.3215 -2.5562 7.6636 12 6 2.7568 -0.6805 6.0710 13 6 2.2463 0.0419 4.8219 14 7 2.0183 -0.6905 -1.1963 15 6 1.6644 -2.0931 -1.4281 16 6 2.8056 -0.0249 -2.0976 17 1 2.7649 1.0525 -2.1578 18 6 3.6559 -0.7353 -2.9339 19 7 4.1595 -1.8849 -2.5376 20 14 4.0914 -0.0557 -4.6185 21 1 5.0139 -0.9938 -5.3073 22 1 2.8537 0.1019 -5.4238 23 1 4.7529 1.2648 -4.4637 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.1488 0.5384 2.5436 28 1 3.1938 -1.3336 3.4613 29 1 0.2510 -1.7021 4.1834 30 1 1.2133 -2.7949 3.1597 31 1 2.7591 -3.2092 5.0532 32 1 1.0869 -3.6382 5.4879 33 1 0.8132 -1.4416 6.6043 34 1 2.3591 -1.8561 8.4981 35 1 1.6484 -3.3778 7.9081 36 1 3.3205 -2.9491 7.4742 37 1 3.7557 -1.0730 5.8814 38 1 2.7942 0.0194 6.9060 39 1 2.9192 0.8637 4.5773 40 1 1.2472 0.4344 5.0113 41 1 2.3893 -2.7377 -0.9312 42 1 0.6699 -2.2880 -1.0270 43 1 1.6706 -2.2972 -2.4989 44 1 4.0079 -2.1940 -1.6308 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972302.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:43 Heat of formation + Delta-G solvation = -64.818919 kcal Electronic energy + Delta-G solvation = -21614.899963 eV Core-core repulsion = 18565.792707 eV Total energy + Delta-G solvation = -3049.107255 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.13490 -39.46066 -37.48235 -35.58546 -34.16756 -32.14042 -31.75596 -30.53671 -28.16710 -26.95742 -25.53836 -23.78383 -23.46143 -21.97056 -21.16415 -20.45845 -19.48177 -17.96809 -17.40286 -16.39338 -16.12517 -15.88231 -15.43358 -15.25302 -15.17768 -15.15818 -14.79862 -14.41745 -14.13749 -13.66592 -13.43330 -13.21250 -13.12380 -13.09456 -12.77304 -12.72226 -12.46776 -12.42468 -12.14670 -12.08632 -11.90743 -11.88909 -11.64920 -11.58573 -11.27245 -11.09987 -10.66821 -10.40832 -9.95009 -8.98688 -8.25625 -5.38390 1.57960 1.66795 1.81181 1.85797 2.28130 2.68440 3.21441 3.48728 3.67088 3.73854 3.87709 4.04861 4.12171 4.21623 4.27700 4.35763 4.42349 4.45569 4.53741 4.56825 4.59303 4.78908 4.81379 4.85874 4.90009 4.95408 4.98738 5.01152 5.10342 5.13334 5.18298 5.22465 5.26787 5.34595 5.38046 5.41132 5.56290 5.66406 5.79031 6.34945 6.67177 7.03066 7.46218 7.78051 8.16449 8.97844 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035739 B = 0.004086 C = 0.004006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.262837 B = 6851.155741 C = 6987.131507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.144 3.856 3 H 0.093 0.907 4 C 0.487 3.513 5 O -0.580 6.580 6 N -0.717 5.717 7 C 0.142 3.858 8 C -0.120 4.120 9 C -0.110 4.110 10 C -0.088 4.088 11 C -0.146 4.146 12 C -0.110 4.110 13 C -0.115 4.115 14 N -0.592 5.592 15 C 0.159 3.841 16 C -0.371 4.371 17 H 0.065 0.935 18 C -0.077 4.077 19 N -0.939 5.939 20 Si 1.118 2.882 21 H -0.296 1.296 22 H -0.275 1.275 23 H -0.272 1.272 24 H 0.094 0.906 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.412 0.588 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.091 0.909 41 H -0.010 1.010 42 H 0.039 0.961 43 H 0.023 0.977 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 5.561 19.768 22.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.033 3.967 3 H 0.110 0.890 4 C 0.273 3.727 5 O -0.458 6.458 6 N -0.371 5.371 7 C 0.038 3.962 8 C -0.159 4.159 9 C -0.148 4.148 10 C -0.106 4.106 11 C -0.203 4.203 12 C -0.148 4.148 13 C -0.153 4.153 14 N -0.314 5.314 15 C 0.013 3.987 16 C -0.501 4.501 17 H 0.083 0.917 18 C -0.274 4.274 19 N -0.580 5.580 20 Si 0.942 3.058 21 H -0.223 1.223 22 H -0.201 1.201 23 H -0.198 1.198 24 H 0.113 0.887 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.249 0.751 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.009 0.991 42 H 0.057 0.943 43 H 0.042 0.958 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.518 4.538 18.252 20.647 hybrid contribution -0.405 0.027 1.223 1.288 sum -8.923 4.564 19.475 21.902 Atomic orbital electron populations 1.22030 0.92419 1.01848 1.03488 1.20855 0.96182 0.96241 0.83414 0.88951 1.22754 0.79109 0.84591 0.86265 1.90646 1.39194 1.28664 1.87261 1.46209 1.54038 1.32332 1.04549 1.20960 0.96744 0.93620 0.84914 1.21821 0.99811 0.96900 0.97384 1.21559 1.00726 0.98386 0.94130 1.21146 1.00162 0.95051 0.94228 1.21815 1.00888 1.00598 0.97030 1.21572 0.98582 0.97535 0.97068 1.21763 1.03368 0.97065 0.93104 1.44042 1.57550 1.09521 1.20284 1.20631 0.95575 0.85199 0.97271 1.20324 1.20782 0.92974 1.15974 0.91700 1.27356 0.93968 0.97632 1.08440 1.70837 1.41465 1.25412 1.20269 0.82858 0.76287 0.74909 0.71784 1.22283 1.20063 1.19752 0.88734 0.91510 0.93789 0.75121 0.94075 0.90015 0.95348 0.93682 0.91031 0.89728 0.91406 0.92259 0.93464 0.93159 0.89411 0.91378 0.89043 0.99137 0.94270 0.95831 0.93495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.06 71.98 0.65 -3.62 16 2 C 0.14 5.94 3.13 44.24 0.14 6.08 16 3 H 0.09 3.65 7.87 -2.39 -0.02 3.63 16 4 C 0.49 20.19 7.02 87.65 0.62 20.80 16 5 O -0.58 -30.91 14.33 -3.03 -0.04 -30.96 16 6 N -0.72 -20.83 4.97 -442.54 -2.20 -23.03 16 7 C 0.14 3.86 2.45 44.99 0.11 3.97 16 8 C -0.12 -3.04 5.49 30.59 0.17 -2.87 16 9 C -0.11 -2.30 5.20 30.60 0.16 -2.14 16 10 C -0.09 -1.35 2.72 -10.79 -0.03 -1.37 16 11 C -0.15 -1.94 9.19 71.98 0.66 -1.28 16 12 C -0.11 -1.75 5.21 30.61 0.16 -1.59 16 13 C -0.12 -2.07 5.40 30.61 0.17 -1.90 16 14 N -0.59 -31.54 2.46 -707.01 -1.74 -33.28 16 15 C 0.16 8.61 7.87 127.77 1.01 9.61 16 16 C -0.37 -21.60 9.39 84.03 0.79 -20.81 16 17 H 0.07 3.62 7.95 -2.91 -0.02 3.60 16 18 C -0.08 -4.61 4.62 84.86 0.39 -4.22 16 19 N -0.94 -62.25 12.72 21.65 0.28 -61.98 16 20 Si 1.12 52.72 30.01 68.60 2.06 54.77 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H 0.09 2.01 7.56 -2.39 -0.02 1.99 16 25 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 26 H 0.04 1.43 6.67 -2.38 -0.02 1.42 16 27 H 0.41 8.59 8.02 -92.71 -0.74 7.85 16 28 H 0.04 1.47 7.58 -2.39 -0.02 1.45 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H -0.01 -0.59 5.79 -2.39 -0.01 -0.60 16 42 H 0.04 1.84 6.43 -2.39 -0.02 1.82 16 43 H 0.02 1.33 7.28 -2.39 -0.02 1.32 16 44 H 0.25 17.93 6.39 -92.71 -0.59 17.34 16 Total: -1.00 -79.14 339.95 3.73 -75.41 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.39 Total: 18.40 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 4.99 Total: 0.65 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -3.66 Total: -118.28 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.04 Total: -30.96 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 2.06 Total: 54.77 kcal Total: -79.14 3.73 -75.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972302.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.592 kcal (2) G-P(sol) polarization free energy of solvation -79.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds