Wall clock time and date at job start Mon Mar 30 2020 01:34:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.53000 * 109.47038 * 2 1
4 4 C 1.52998 * 109.46816 * 180.02562 * 3 2 1
5 5 C 1.53005 * 109.47270 * 59.99994 * 4 3 2
6 6 N 1.46499 * 109.46977 * 59.99941 * 5 4 3
7 7 C 1.46501 * 119.99991 * 0.82585 * 6 5 4
8 8 C 1.34775 * 120.00178 * 180.82363 * 6 5 4
9 9 O 1.21283 * 119.99918 * 0.28178 * 8 6 5
10 10 C 1.50702 * 120.00157 * 179.97438 * 8 6 5
11 11 N 1.46502 * 109.47045 * 180.02562 * 10 8 6
12 12 C 1.46499 * 120.00017 * 270.00226 * 11 10 8
13 13 C 1.36932 * 119.99910 * 90.00146 * 11 10 8
14 14 H 1.08004 * 120.00028 * 24.94376 * 13 11 10
15 15 C 1.38816 * 120.00100 * 204.94606 * 13 11 10
16 16 N 1.31616 * 119.99855 * 5.28216 * 15 13 11
17 17 Si 1.86804 * 120.00114 * 185.28254 * 15 13 11
18 18 H 1.48496 * 109.46854 * 59.99837 * 17 15 13
19 19 H 1.48499 * 109.46791 * 179.97438 * 17 15 13
20 20 H 1.48494 * 109.46874 * 299.99921 * 17 15 13
21 21 C 1.52992 * 109.46979 * 300.00165 * 5 4 3
22 22 C 1.52994 * 109.47461 * 60.00110 * 21 5 4
23 23 H 1.09008 * 109.47028 * 60.00089 * 1 2 3
24 24 H 1.08995 * 109.47345 * 179.97438 * 1 2 3
25 25 H 1.08997 * 109.47026 * 300.00319 * 1 2 3
26 26 H 1.08998 * 109.46530 * 120.00113 * 2 1 3
27 27 H 1.08998 * 109.47214 * 60.00433 * 3 2 1
28 28 H 1.08998 * 109.47091 * 299.99753 * 3 2 1
29 29 H 1.08996 * 109.47354 * 300.00218 * 4 3 2
30 30 H 1.09004 * 109.47418 * 180.02562 * 4 3 2
31 31 H 1.09000 * 109.46901 * 179.97438 * 5 4 3
32 32 H 1.09000 * 109.47429 * 264.05451 * 7 6 5
33 33 H 1.09007 * 109.47518 * 24.05915 * 7 6 5
34 34 H 1.09006 * 109.47262 * 144.05263 * 7 6 5
35 35 H 1.08994 * 109.46939 * 300.00268 * 10 8 6
36 36 H 1.08999 * 109.46866 * 60.00234 * 10 8 6
37 37 H 1.09004 * 109.47152 * 95.00906 * 12 11 10
38 38 H 1.08998 * 109.47061 * 215.00623 * 12 11 10
39 39 H 1.09003 * 109.47185 * 335.01075 * 12 11 10
40 40 H 0.97004 * 120.00178 * 179.97438 * 16 15 13
41 41 H 1.09007 * 109.47274 * 180.02562 * 21 5 4
42 42 H 1.09006 * 109.47173 * 299.99367 * 21 5 4
43 43 H 1.09008 * 109.47315 * 180.02562 * 22 21 5
44 44 H 1.08996 * 109.47483 * 59.99566 * 22 21 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 3.5700 1.4424 -0.0006
5 6 4.0795 0.7213 -1.2502
6 7 3.5907 1.4122 -2.4461
7 6 2.7635 2.6138 -2.3112
8 6 3.9020 0.9423 -3.6703
9 8 4.5826 -0.0553 -3.7820
10 6 3.3987 1.6526 -4.9005
11 7 3.8698 0.9505 -6.0969
12 6 5.1498 1.3197 -6.7064
13 6 3.1138 -0.0508 -6.6453
14 1 2.0458 -0.0704 -6.4856
15 6 3.7200 -1.0408 -7.4065
16 7 5.0312 -1.0769 -7.5154
17 14 2.6750 -2.3217 -8.2764
18 1 1.7574 -1.6475 -9.2296
19 1 3.5564 -3.2593 -9.0175
20 1 1.8805 -3.0760 -7.2740
21 6 3.5695 -0.7210 -1.2502
22 6 2.0395 -0.7210 -1.2497
23 1 -0.3633 0.5139 -0.8901
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3633 0.5139 0.8899
26 1 1.8933 -0.5139 0.8900
27 1 1.6768 1.9563 0.8900
28 1 1.6767 1.9563 -0.8900
29 1 3.9337 0.9285 0.8890
30 1 3.9335 2.4701 -0.0002
31 1 5.1695 0.7217 -1.2509
32 1 1.7106 2.3391 -2.3750
33 1 2.9589 3.0831 -1.3469
34 1 3.0057 3.3133 -3.1113
35 1 2.3088 1.6650 -4.8924
36 1 3.7737 2.6760 -4.9080
37 1 5.9343 0.6633 -6.3299
38 1 5.0793 1.2177 -7.7893
39 1 5.3881 2.3529 -6.4536
40 1 5.4549 -1.7688 -8.0470
41 1 3.9328 -1.2350 -2.1402
42 1 3.9332 -1.2351 -0.3605
43 1 1.6761 -1.7488 -1.2492
44 1 1.6758 -0.2071 -2.1393
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000068972793.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:34:03
Heat of formation + Delta-G solvation = -2.261036 kcal
Electronic energy + Delta-G solvation = -22368.736382 eV
Core-core repulsion = 19322.341840 eV
Total energy + Delta-G solvation = -3046.394542 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.20138 -37.66250 -35.02670 -34.39901 -31.89168 -30.98253 -30.80852 -27.31961
-26.85957 -25.71700 -25.02610 -22.55494 -21.98082 -20.75582 -19.69422 -18.13098
-16.69830 -16.25998 -15.80652 -15.36069 -14.65957 -14.45529 -14.33236 -13.99967
-13.46878 -13.25040 -13.16770 -12.78104 -12.52359 -12.34504 -12.10629 -11.86692
-11.71081 -11.58292 -11.43422 -11.32445 -11.05736 -10.78525 -10.75417 -10.60142
-10.27932 -10.17669 -10.06105 -9.98096 -9.84708 -9.81448 -8.74518 -8.38670
-7.97741 -6.63925 -5.61517 -3.10187 3.43759 3.49646 3.50455 3.59788
3.68362 4.57585 4.72030 4.78816 4.83371 5.12179 5.29210 5.32898
5.41369 5.50383 5.54080 5.58452 5.65915 5.67386 5.69418 5.72812
5.79249 5.82393 5.85305 5.94000 6.00443 6.08135 6.17898 6.22879
6.28819 6.35671 6.42800 6.46147 6.59709 6.72758 6.82220 7.21185
7.48567 7.84220 7.94005 8.12779 8.49132 9.22202 9.33811 9.93330
10.42082 11.42944
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.023009 B = 0.005803 C = 0.005223
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1216.634430 B = 4824.347437 C = 5359.927627
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.089 4.089
3 C -0.140 4.140
4 C -0.123 4.123
5 C 0.152 3.848
6 N -0.626 5.626
7 C 0.077 3.923
8 C 0.473 3.527
9 O -0.504 6.504
10 C 0.135 3.865
11 N -0.575 5.575
12 C 0.166 3.834
13 C -0.258 4.258
14 H 0.066 0.934
15 C 0.012 3.988
16 N -0.898 5.898
17 Si 0.904 3.096
18 H -0.284 1.284
19 H -0.290 1.290
20 H -0.284 1.284
21 C -0.136 4.136
22 C -0.107 4.107
23 H 0.054 0.946
24 H 0.051 0.949
25 H 0.049 0.951
26 H 0.062 0.938
27 H 0.056 0.944
28 H 0.090 0.910
29 H 0.069 0.931
30 H 0.065 0.935
31 H 0.064 0.936
32 H 0.052 0.948
33 H 0.073 0.927
34 H 0.062 0.938
35 H 0.069 0.931
36 H 0.063 0.937
37 H 0.034 0.966
38 H 0.048 0.952
39 H -0.007 1.007
40 H 0.252 0.748
41 H 0.089 0.911
42 H 0.057 0.943
43 H 0.054 0.946
44 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.277 7.860 15.607 18.568
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.108 4.108
3 C -0.177 4.177
4 C -0.161 4.161
5 C 0.049 3.951
6 N -0.366 5.366
7 C -0.066 4.066
8 C 0.259 3.741
9 O -0.376 6.376
10 C 0.003 3.997
11 N -0.295 5.295
12 C 0.022 3.978
13 C -0.387 4.387
14 H 0.084 0.916
15 C -0.187 4.187
16 N -0.542 5.542
17 Si 0.734 3.266
18 H -0.210 1.210
19 H -0.216 1.216
20 H -0.210 1.210
21 C -0.175 4.175
22 C -0.144 4.144
23 H 0.073 0.927
24 H 0.070 0.930
25 H 0.069 0.931
26 H 0.081 0.919
27 H 0.074 0.926
28 H 0.108 0.892
29 H 0.088 0.912
30 H 0.084 0.916
31 H 0.082 0.918
32 H 0.070 0.930
33 H 0.091 0.909
34 H 0.081 0.919
35 H 0.087 0.913
36 H 0.081 0.919
37 H 0.052 0.948
38 H 0.066 0.934
39 H 0.011 0.989
40 H 0.062 0.938
41 H 0.108 0.892
42 H 0.076 0.924
43 H 0.073 0.927
44 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -5.747 7.172 15.342 17.885
hybrid contribution -0.474 -0.904 -0.145 1.031
sum -6.222 6.268 15.197 17.577
Atomic orbital electron populations
1.21819 0.95652 1.01472 1.01364 1.21118 0.95027 0.96120 0.98516
1.22230 0.95099 0.97162 1.03160 1.21796 0.96401 1.00411 0.97488
1.20819 0.97568 0.92130 0.84620 1.48495 1.53873 1.28404 1.05826
1.21960 0.94502 0.87824 1.02296 1.23500 0.80274 0.86023 0.84289
1.90650 1.36665 1.24654 1.85595 1.21024 0.98717 0.94953 0.85025
1.43795 1.22099 1.40278 1.23299 1.20853 0.87210 0.92244 0.97491
1.19059 0.89786 1.02498 1.27379 0.91583 1.25144 0.95437 0.97152
1.00996 1.70055 1.07517 1.34419 1.42187 0.86362 0.79344 0.81651
0.79266 1.21011 1.21590 1.20992 1.21929 0.95706 0.96699 1.03139
1.21469 0.95697 0.99712 0.97539 0.92701 0.92957 0.93144 0.91946
0.92564 0.89230 0.91205 0.91597 0.91847 0.92956 0.90861 0.91899
0.91278 0.91883 0.94777 0.93367 0.98892 0.93759 0.89247 0.92385
0.92689 0.91709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16
2 C -0.09 -1.00 2.72 -90.61 -0.25 -1.24 16
3 C -0.14 -1.40 4.55 -26.73 -0.12 -1.52 16
4 C -0.12 -1.32 4.91 -26.73 -0.13 -1.45 16
5 C 0.15 2.25 2.95 -67.93 -0.20 2.05 16
6 N -0.63 -9.94 2.25 -173.93 -0.39 -10.33 16
7 C 0.08 0.89 8.00 59.85 0.48 1.37 16
8 C 0.47 10.01 7.45 -10.98 -0.08 9.93 16
9 O -0.50 -13.31 14.47 5.56 0.08 -13.23 16
10 C 0.14 2.83 4.82 -5.19 -0.03 2.80 16
11 N -0.57 -15.15 2.41 -182.50 -0.44 -15.59 16
12 C 0.17 4.35 8.99 59.85 0.54 4.89 16
13 C -0.26 -7.38 9.67 -15.06 -0.15 -7.53 16
14 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16
15 C 0.01 0.35 5.24 -17.43 -0.09 0.26 16
16 N -0.90 -27.62 10.44 55.49 0.58 -27.04 16
17 Si 0.90 22.77 29.56 -169.99 -5.02 17.75 16
18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
20 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
21 C -0.14 -2.16 5.23 -26.74 -0.14 -2.30 16
22 C -0.11 -1.53 5.04 -26.73 -0.13 -1.66 16
23 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16
24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16
25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16
27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
28 H 0.09 0.91 3.66 -51.93 -0.19 0.72 16
29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.07 0.63 6.89 -51.93 -0.36 0.28 16
31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16
32 H 0.05 0.57 6.70 -51.93 -0.35 0.22 16
33 H 0.07 0.68 4.95 -51.92 -0.26 0.43 16
34 H 0.06 0.68 6.69 -51.93 -0.35 0.34 16
35 H 0.07 1.34 8.00 -51.93 -0.42 0.93 16
36 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16
37 H 0.03 1.00 7.35 -51.93 -0.38 0.61 16
38 H 0.05 1.32 7.25 -51.93 -0.38 0.94 16
39 H -0.01 -0.17 7.84 -51.93 -0.41 -0.58 16
40 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16
41 H 0.09 1.83 6.10 -51.93 -0.32 1.51 16
42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16
43 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16
44 H 0.06 1.05 7.60 -51.93 -0.39 0.66 16
LS Contribution 328.80 15.07 4.95 4.95
Total: -1.00 -33.85 328.80 -7.71 -41.56
By element:
Atomic # 1 Polarization: 4.97 SS G_CDS: -7.51 Total: -2.54 kcal
Atomic # 6 Polarization: 4.43 SS G_CDS: 0.04 Total: 4.47 kcal
Atomic # 7 Polarization: -52.71 SS G_CDS: -0.25 Total: -52.96 kcal
Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal
Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal
Total LS contribution 4.95 Total: 4.95 kcal
Total: -33.85 -7.71 -41.56 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000068972793.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal
(2) G-P(sol) polarization free energy of solvation -33.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.454 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.261 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds