Wall clock time and date at job start Mon Mar 30 2020 01:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 C 1.52998 * 109.46816 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47270 * 59.99994 * 4 3 2 6 6 N 1.46499 * 109.46977 * 59.99941 * 5 4 3 7 7 C 1.46501 * 119.99991 * 0.82585 * 6 5 4 8 8 C 1.34775 * 120.00178 * 180.82363 * 6 5 4 9 9 O 1.21283 * 119.99918 * 0.28178 * 8 6 5 10 10 C 1.50702 * 120.00157 * 179.97438 * 8 6 5 11 11 N 1.46502 * 109.47045 * 180.02562 * 10 8 6 12 12 C 1.46499 * 120.00017 * 270.00226 * 11 10 8 13 13 C 1.36932 * 119.99910 * 90.00146 * 11 10 8 14 14 H 1.08004 * 120.00028 * 24.94376 * 13 11 10 15 15 C 1.38816 * 120.00100 * 204.94606 * 13 11 10 16 16 N 1.31616 * 119.99855 * 5.28216 * 15 13 11 17 17 Si 1.86804 * 120.00114 * 185.28254 * 15 13 11 18 18 H 1.48496 * 109.46854 * 59.99837 * 17 15 13 19 19 H 1.48499 * 109.46791 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46874 * 299.99921 * 17 15 13 21 21 C 1.52992 * 109.46979 * 300.00165 * 5 4 3 22 22 C 1.52994 * 109.47461 * 60.00110 * 21 5 4 23 23 H 1.09008 * 109.47028 * 60.00089 * 1 2 3 24 24 H 1.08995 * 109.47345 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47026 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.46530 * 120.00113 * 2 1 3 27 27 H 1.08998 * 109.47214 * 60.00433 * 3 2 1 28 28 H 1.08998 * 109.47091 * 299.99753 * 3 2 1 29 29 H 1.08996 * 109.47354 * 300.00218 * 4 3 2 30 30 H 1.09004 * 109.47418 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46901 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47429 * 264.05451 * 7 6 5 33 33 H 1.09007 * 109.47518 * 24.05915 * 7 6 5 34 34 H 1.09006 * 109.47262 * 144.05263 * 7 6 5 35 35 H 1.08994 * 109.46939 * 300.00268 * 10 8 6 36 36 H 1.08999 * 109.46866 * 60.00234 * 10 8 6 37 37 H 1.09004 * 109.47152 * 95.00906 * 12 11 10 38 38 H 1.08998 * 109.47061 * 215.00623 * 12 11 10 39 39 H 1.09003 * 109.47185 * 335.01075 * 12 11 10 40 40 H 0.97004 * 120.00178 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.47274 * 180.02562 * 21 5 4 42 42 H 1.09006 * 109.47173 * 299.99367 * 21 5 4 43 43 H 1.09008 * 109.47315 * 180.02562 * 22 21 5 44 44 H 1.08996 * 109.47483 * 59.99566 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7213 -1.2502 6 7 3.5907 1.4122 -2.4461 7 6 2.7635 2.6138 -2.3112 8 6 3.9020 0.9423 -3.6703 9 8 4.5826 -0.0553 -3.7820 10 6 3.3987 1.6526 -4.9005 11 7 3.8698 0.9505 -6.0969 12 6 5.1498 1.3197 -6.7064 13 6 3.1138 -0.0508 -6.6453 14 1 2.0458 -0.0704 -6.4856 15 6 3.7200 -1.0408 -7.4065 16 7 5.0312 -1.0769 -7.5154 17 14 2.6750 -2.3217 -8.2764 18 1 1.7574 -1.6475 -9.2296 19 1 3.5564 -3.2593 -9.0175 20 1 1.8805 -3.0760 -7.2740 21 6 3.5695 -0.7210 -1.2502 22 6 2.0395 -0.7210 -1.2497 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 0.8890 30 1 3.9335 2.4701 -0.0002 31 1 5.1695 0.7217 -1.2509 32 1 1.7106 2.3391 -2.3750 33 1 2.9589 3.0831 -1.3469 34 1 3.0057 3.3133 -3.1113 35 1 2.3088 1.6650 -4.8924 36 1 3.7737 2.6760 -4.9080 37 1 5.9343 0.6633 -6.3299 38 1 5.0793 1.2177 -7.7893 39 1 5.3881 2.3529 -6.4536 40 1 5.4549 -1.7688 -8.0470 41 1 3.9328 -1.2350 -2.1402 42 1 3.9332 -1.2351 -0.3605 43 1 1.6761 -1.7488 -1.2492 44 1 1.6758 -0.2071 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:03 Heat of formation + Delta-G solvation = -2.261036 kcal Electronic energy + Delta-G solvation = -22368.736382 eV Core-core repulsion = 19322.341840 eV Total energy + Delta-G solvation = -3046.394542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20138 -37.66250 -35.02670 -34.39901 -31.89168 -30.98253 -30.80852 -27.31961 -26.85957 -25.71700 -25.02610 -22.55494 -21.98082 -20.75582 -19.69422 -18.13098 -16.69830 -16.25998 -15.80652 -15.36069 -14.65957 -14.45529 -14.33236 -13.99967 -13.46878 -13.25040 -13.16770 -12.78104 -12.52359 -12.34504 -12.10629 -11.86692 -11.71081 -11.58292 -11.43422 -11.32445 -11.05736 -10.78525 -10.75417 -10.60142 -10.27932 -10.17669 -10.06105 -9.98096 -9.84708 -9.81448 -8.74518 -8.38670 -7.97741 -6.63925 -5.61517 -3.10187 3.43759 3.49646 3.50455 3.59788 3.68362 4.57585 4.72030 4.78816 4.83371 5.12179 5.29210 5.32898 5.41369 5.50383 5.54080 5.58452 5.65915 5.67386 5.69418 5.72812 5.79249 5.82393 5.85305 5.94000 6.00443 6.08135 6.17898 6.22879 6.28819 6.35671 6.42800 6.46147 6.59709 6.72758 6.82220 7.21185 7.48567 7.84220 7.94005 8.12779 8.49132 9.22202 9.33811 9.93330 10.42082 11.42944 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.005803 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.634430 B = 4824.347437 C = 5359.927627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.123 4.123 5 C 0.152 3.848 6 N -0.626 5.626 7 C 0.077 3.923 8 C 0.473 3.527 9 O -0.504 6.504 10 C 0.135 3.865 11 N -0.575 5.575 12 C 0.166 3.834 13 C -0.258 4.258 14 H 0.066 0.934 15 C 0.012 3.988 16 N -0.898 5.898 17 Si 0.904 3.096 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C -0.136 4.136 22 C -0.107 4.107 23 H 0.054 0.946 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.048 0.952 39 H -0.007 1.007 40 H 0.252 0.748 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 7.860 15.607 18.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 C -0.177 4.177 4 C -0.161 4.161 5 C 0.049 3.951 6 N -0.366 5.366 7 C -0.066 4.066 8 C 0.259 3.741 9 O -0.376 6.376 10 C 0.003 3.997 11 N -0.295 5.295 12 C 0.022 3.978 13 C -0.387 4.387 14 H 0.084 0.916 15 C -0.187 4.187 16 N -0.542 5.542 17 Si 0.734 3.266 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.210 1.210 21 C -0.175 4.175 22 C -0.144 4.144 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.011 0.989 40 H 0.062 0.938 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.747 7.172 15.342 17.885 hybrid contribution -0.474 -0.904 -0.145 1.031 sum -6.222 6.268 15.197 17.577 Atomic orbital electron populations 1.21819 0.95652 1.01472 1.01364 1.21118 0.95027 0.96120 0.98516 1.22230 0.95099 0.97162 1.03160 1.21796 0.96401 1.00411 0.97488 1.20819 0.97568 0.92130 0.84620 1.48495 1.53873 1.28404 1.05826 1.21960 0.94502 0.87824 1.02296 1.23500 0.80274 0.86023 0.84289 1.90650 1.36665 1.24654 1.85595 1.21024 0.98717 0.94953 0.85025 1.43795 1.22099 1.40278 1.23299 1.20853 0.87210 0.92244 0.97491 1.19059 0.89786 1.02498 1.27379 0.91583 1.25144 0.95437 0.97152 1.00996 1.70055 1.07517 1.34419 1.42187 0.86362 0.79344 0.81651 0.79266 1.21011 1.21590 1.20992 1.21929 0.95706 0.96699 1.03139 1.21469 0.95697 0.99712 0.97539 0.92701 0.92957 0.93144 0.91946 0.92564 0.89230 0.91205 0.91597 0.91847 0.92956 0.90861 0.91899 0.91278 0.91883 0.94777 0.93367 0.98892 0.93759 0.89247 0.92385 0.92689 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 2 C -0.09 -1.00 2.72 -90.61 -0.25 -1.24 16 3 C -0.14 -1.40 4.55 -26.73 -0.12 -1.52 16 4 C -0.12 -1.32 4.91 -26.73 -0.13 -1.45 16 5 C 0.15 2.25 2.95 -67.93 -0.20 2.05 16 6 N -0.63 -9.94 2.25 -173.93 -0.39 -10.33 16 7 C 0.08 0.89 8.00 59.85 0.48 1.37 16 8 C 0.47 10.01 7.45 -10.98 -0.08 9.93 16 9 O -0.50 -13.31 14.47 5.56 0.08 -13.23 16 10 C 0.14 2.83 4.82 -5.19 -0.03 2.80 16 11 N -0.57 -15.15 2.41 -182.50 -0.44 -15.59 16 12 C 0.17 4.35 8.99 59.85 0.54 4.89 16 13 C -0.26 -7.38 9.67 -15.06 -0.15 -7.53 16 14 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 15 C 0.01 0.35 5.24 -17.43 -0.09 0.26 16 16 N -0.90 -27.62 10.44 55.49 0.58 -27.04 16 17 Si 0.90 22.77 29.56 -169.99 -5.02 17.75 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 21 C -0.14 -2.16 5.23 -26.74 -0.14 -2.30 16 22 C -0.11 -1.53 5.04 -26.73 -0.13 -1.66 16 23 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.91 3.66 -51.93 -0.19 0.72 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.63 6.89 -51.93 -0.36 0.28 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 0.57 6.70 -51.93 -0.35 0.22 16 33 H 0.07 0.68 4.95 -51.92 -0.26 0.43 16 34 H 0.06 0.68 6.69 -51.93 -0.35 0.34 16 35 H 0.07 1.34 8.00 -51.93 -0.42 0.93 16 36 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16 37 H 0.03 1.00 7.35 -51.93 -0.38 0.61 16 38 H 0.05 1.32 7.25 -51.93 -0.38 0.94 16 39 H -0.01 -0.17 7.84 -51.93 -0.41 -0.58 16 40 H 0.25 7.51 8.31 -40.82 -0.34 7.18 16 41 H 0.09 1.83 6.10 -51.93 -0.32 1.51 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.06 1.05 7.60 -51.93 -0.39 0.66 16 LS Contribution 328.80 15.07 4.95 4.95 Total: -1.00 -33.85 328.80 -7.71 -41.56 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -7.51 Total: -2.54 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 0.04 Total: 4.47 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.25 Total: -52.96 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.08 Total: -13.23 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.85 -7.71 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.303 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds