Wall clock time and date at job start Mon Mar 30 2020 01:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 C 1.52998 * 109.46816 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47270 * 59.99994 * 4 3 2 6 6 N 1.46499 * 109.46977 * 59.99941 * 5 4 3 7 7 C 1.46501 * 119.99991 * 0.82585 * 6 5 4 8 8 C 1.34775 * 120.00178 * 180.82363 * 6 5 4 9 9 O 1.21283 * 119.99918 * 0.28178 * 8 6 5 10 10 C 1.50702 * 120.00157 * 179.97438 * 8 6 5 11 11 N 1.46502 * 109.47045 * 180.02562 * 10 8 6 12 12 C 1.46499 * 120.00017 * 270.00226 * 11 10 8 13 13 C 1.36932 * 119.99910 * 90.00146 * 11 10 8 14 14 H 1.08004 * 120.00028 * 24.94376 * 13 11 10 15 15 C 1.38816 * 120.00100 * 204.94606 * 13 11 10 16 16 N 1.31616 * 119.99855 * 5.28216 * 15 13 11 17 17 Si 1.86804 * 120.00114 * 185.28254 * 15 13 11 18 18 H 1.48496 * 109.46854 * 59.99837 * 17 15 13 19 19 H 1.48499 * 109.46791 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.46874 * 299.99921 * 17 15 13 21 21 C 1.52992 * 109.46979 * 300.00165 * 5 4 3 22 22 C 1.52994 * 109.47461 * 60.00110 * 21 5 4 23 23 H 1.09008 * 109.47028 * 60.00089 * 1 2 3 24 24 H 1.08995 * 109.47345 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47026 * 300.00319 * 1 2 3 26 26 H 1.08998 * 109.46530 * 120.00113 * 2 1 3 27 27 H 1.08998 * 109.47214 * 60.00433 * 3 2 1 28 28 H 1.08998 * 109.47091 * 299.99753 * 3 2 1 29 29 H 1.08996 * 109.47354 * 300.00218 * 4 3 2 30 30 H 1.09004 * 109.47418 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46901 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.47429 * 264.05451 * 7 6 5 33 33 H 1.09007 * 109.47518 * 24.05915 * 7 6 5 34 34 H 1.09006 * 109.47262 * 144.05263 * 7 6 5 35 35 H 1.08994 * 109.46939 * 300.00268 * 10 8 6 36 36 H 1.08999 * 109.46866 * 60.00234 * 10 8 6 37 37 H 1.09004 * 109.47152 * 95.00906 * 12 11 10 38 38 H 1.08998 * 109.47061 * 215.00623 * 12 11 10 39 39 H 1.09003 * 109.47185 * 335.01075 * 12 11 10 40 40 H 0.97004 * 120.00178 * 179.97438 * 16 15 13 41 41 H 1.09007 * 109.47274 * 180.02562 * 21 5 4 42 42 H 1.09006 * 109.47173 * 299.99367 * 21 5 4 43 43 H 1.09008 * 109.47315 * 180.02562 * 22 21 5 44 44 H 1.08996 * 109.47483 * 59.99566 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0795 0.7213 -1.2502 6 7 3.5907 1.4122 -2.4461 7 6 2.7635 2.6138 -2.3112 8 6 3.9020 0.9423 -3.6703 9 8 4.5826 -0.0553 -3.7820 10 6 3.3987 1.6526 -4.9005 11 7 3.8698 0.9505 -6.0969 12 6 5.1498 1.3197 -6.7064 13 6 3.1138 -0.0508 -6.6453 14 1 2.0458 -0.0704 -6.4856 15 6 3.7200 -1.0408 -7.4065 16 7 5.0312 -1.0769 -7.5154 17 14 2.6750 -2.3217 -8.2764 18 1 1.7574 -1.6475 -9.2296 19 1 3.5564 -3.2593 -9.0175 20 1 1.8805 -3.0760 -7.2740 21 6 3.5695 -0.7210 -1.2502 22 6 2.0395 -0.7210 -1.2497 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9285 0.8890 30 1 3.9335 2.4701 -0.0002 31 1 5.1695 0.7217 -1.2509 32 1 1.7106 2.3391 -2.3750 33 1 2.9589 3.0831 -1.3469 34 1 3.0057 3.3133 -3.1113 35 1 2.3088 1.6650 -4.8924 36 1 3.7737 2.6760 -4.9080 37 1 5.9343 0.6633 -6.3299 38 1 5.0793 1.2177 -7.7893 39 1 5.3881 2.3529 -6.4536 40 1 5.4549 -1.7688 -8.0470 41 1 3.9328 -1.2350 -2.1402 42 1 3.9332 -1.2351 -0.3605 43 1 1.6761 -1.7488 -1.2492 44 1 1.6758 -0.2071 -2.1393 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:02 Heat of formation + Delta-G solvation = -23.247700 kcal Electronic energy + Delta-G solvation = -22369.646432 eV Core-core repulsion = 19322.341840 eV Total energy + Delta-G solvation = -3047.304592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.47730 -39.12651 -36.95110 -35.74682 -33.45065 -32.61971 -31.90832 -28.87628 -28.10083 -27.85510 -26.14556 -23.81651 -23.57837 -22.03281 -20.86058 -19.55860 -18.79234 -17.68627 -17.15869 -16.86247 -16.46007 -15.83801 -15.36239 -15.28510 -14.99576 -14.93603 -14.55229 -14.03742 -13.92780 -13.78760 -13.42514 -13.14041 -13.03531 -12.91066 -12.77707 -12.65604 -12.54359 -12.34197 -12.29181 -12.21669 -12.08580 -11.88916 -11.82371 -11.09993 -11.06251 -11.00649 -10.68732 -10.28724 -9.33772 -8.74615 -7.81286 -5.32288 1.41562 1.45843 1.51530 2.03069 2.27927 2.50732 3.35582 3.71280 3.73280 3.84504 3.85678 4.12017 4.25071 4.31873 4.39738 4.48852 4.53792 4.57311 4.60259 4.66188 4.68459 4.79200 4.83095 4.84977 4.87661 4.96988 5.03592 5.13774 5.16538 5.21802 5.29989 5.31580 5.33019 5.44463 5.50100 5.60486 5.62678 5.76217 5.96291 6.30553 6.70422 7.15021 7.62230 7.87636 8.28315 9.22300 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.023009 B = 0.005803 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.634430 B = 4824.347437 C = 5359.927627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.113 4.113 5 C 0.148 3.852 6 N -0.613 5.613 7 C 0.066 3.934 8 C 0.471 3.529 9 O -0.570 6.570 10 C 0.132 3.868 11 N -0.595 5.595 12 C 0.183 3.817 13 C -0.263 4.263 14 H 0.073 0.927 15 C -0.051 4.051 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.266 1.266 19 H -0.295 1.295 20 H -0.283 1.283 21 C -0.135 4.135 22 C -0.102 4.102 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.066 0.934 33 H 0.106 0.894 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.099 0.901 37 H -0.009 1.009 38 H 0.025 0.975 39 H 0.032 0.968 40 H 0.245 0.755 41 H 0.033 0.967 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 10.190 18.061 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.174 4.174 4 C -0.150 4.150 5 C 0.045 3.955 6 N -0.350 5.350 7 C -0.076 4.076 8 C 0.258 3.742 9 O -0.447 6.447 10 C 0.002 3.998 11 N -0.316 5.316 12 C 0.038 3.962 13 C -0.393 4.393 14 H 0.091 0.909 15 C -0.247 4.247 16 N -0.581 5.581 17 Si 0.796 3.204 18 H -0.191 1.191 19 H -0.221 1.221 20 H -0.210 1.210 21 C -0.174 4.174 22 C -0.140 4.140 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.009 0.991 38 H 0.043 0.957 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.063 0.937 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.086 9.575 17.859 21.818 hybrid contribution 0.206 -1.552 -0.780 1.750 sum -7.880 8.023 17.078 20.449 Atomic orbital electron populations 1.21795 0.94548 1.01507 1.02214 1.21088 0.95888 0.96731 0.96523 1.22246 0.94181 0.96281 1.04653 1.21775 0.97033 1.01072 0.95143 1.20930 0.96563 0.91975 0.86045 1.48291 1.52927 1.29148 1.04609 1.22358 0.94420 0.86069 1.04713 1.23216 0.79742 0.85170 0.86121 1.90650 1.39832 1.27448 1.86819 1.21221 0.99689 0.95723 0.83201 1.43951 1.21685 1.40211 1.25706 1.20528 0.86396 0.93378 0.95898 1.19447 0.90441 1.02644 1.26763 0.90929 1.25967 0.96583 0.99506 1.02597 1.70275 1.09201 1.35103 1.43526 0.85334 0.77795 0.79003 0.78235 1.19138 1.22098 1.20959 1.21849 0.96991 0.97403 1.01121 1.21419 0.94309 0.99544 0.98679 0.93101 0.93480 0.90965 0.91088 0.89567 0.89168 0.89753 0.89403 0.93995 0.91554 0.87616 0.90711 0.89434 0.88307 0.99081 0.95669 0.94924 0.94615 0.94863 0.90813 0.93702 0.94018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.19 71.98 0.66 -1.75 16 2 C -0.08 -1.61 2.72 -10.79 -0.03 -1.64 16 3 C -0.14 -2.10 4.55 30.59 0.14 -1.96 16 4 C -0.11 -1.97 4.91 30.60 0.15 -1.82 16 5 C 0.15 4.23 2.95 44.99 0.13 4.37 16 6 N -0.61 -18.62 2.25 -822.57 -1.85 -20.47 16 7 C 0.07 1.25 8.00 127.77 1.02 2.28 16 8 C 0.47 20.07 7.45 87.66 0.65 20.73 16 9 O -0.57 -31.75 14.47 -3.04 -0.04 -31.80 16 10 C 0.13 5.38 4.82 85.63 0.41 5.80 16 11 N -0.59 -31.71 2.41 -731.30 -1.76 -33.48 16 12 C 0.18 9.81 8.99 127.77 1.15 10.96 16 13 C -0.26 -15.32 9.67 84.04 0.81 -14.51 16 14 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 15 C -0.05 -3.10 5.24 84.86 0.45 -2.66 16 16 N -0.94 -60.21 10.44 21.65 0.23 -59.99 16 17 Si 0.97 48.07 29.56 68.60 2.03 50.10 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 20 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 21 C -0.14 -4.39 5.23 30.59 0.16 -4.23 16 22 C -0.10 -2.88 5.04 30.59 0.15 -2.73 16 23 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.09 1.40 3.66 -2.39 -0.01 1.39 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.21 6.89 -2.39 -0.02 1.20 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.16 6.70 -2.39 -0.02 1.15 16 33 H 0.11 1.39 4.95 -2.38 -0.01 1.38 16 34 H 0.07 1.30 6.69 -2.38 -0.02 1.28 16 35 H 0.09 3.22 8.00 -2.39 -0.02 3.20 16 36 H 0.10 3.28 7.13 -2.39 -0.02 3.26 16 37 H -0.01 -0.57 7.35 -2.39 -0.02 -0.59 16 38 H 0.02 1.41 7.25 -2.39 -0.02 1.40 16 39 H 0.03 1.44 7.84 -2.39 -0.02 1.42 16 40 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 41 H 0.03 1.46 6.10 -2.38 -0.01 1.44 16 42 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.04 1.35 7.60 -2.39 -0.02 1.33 16 Total: -1.00 -79.75 328.80 5.42 -74.34 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.96 Total: 8.45 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 5.86 Total: 12.84 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -3.39 Total: -113.93 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.04 Total: -31.80 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Total: -79.75 5.42 -74.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.088 kcal (2) G-P(sol) polarization free energy of solvation -79.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds