Wall clock time and date at job start Mon Mar 30 2020 01:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46847 * 110.99834 * 66.03965 * 10 9 7 12 12 C 1.53045 * 109.52047 * 185.84358 * 11 10 9 13 13 C 1.53120 * 109.27825 * 300.82234 * 12 11 10 14 14 C 1.53121 * 109.15871 * 57.65311 * 13 12 11 15 15 H 1.09001 * 109.50237 * 62.28935 * 14 13 12 16 16 C 1.53007 * 109.50050 * 182.36711 * 14 13 12 17 17 N 1.46896 * 109.46911 * 295.00152 * 16 14 13 18 18 C 1.47021 * 111.00072 * 293.63394 * 17 16 14 19 19 C 1.53103 * 109.25541 * 177.60904 * 18 17 16 20 20 O 1.43012 * 109.25870 * 56.85197 * 19 18 17 21 21 C 1.43008 * 113.73926 * 301.32580 * 20 19 18 22 22 C 1.47018 * 110.99986 * 170.00344 * 17 16 14 23 23 C 1.46839 * 111.00039 * 190.25575 * 10 9 7 24 24 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 26 26 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 27 27 H 1.08998 * 109.46487 * 305.85659 * 11 10 9 28 28 H 1.08991 * 109.46153 * 65.84343 * 11 10 9 29 29 H 1.09003 * 109.50287 * 60.76186 * 12 11 10 30 30 H 1.08996 * 109.50332 * 180.84168 * 12 11 10 31 31 H 1.08996 * 109.52651 * 177.56234 * 13 12 11 32 32 H 1.09005 * 109.52191 * 297.75247 * 13 12 11 33 33 H 1.08997 * 109.47145 * 55.00040 * 16 14 13 34 34 H 1.09004 * 109.46899 * 175.00278 * 16 14 13 35 35 H 1.09000 * 109.50561 * 297.54425 * 18 17 16 36 36 H 1.09000 * 109.50244 * 57.67497 * 18 17 16 37 37 H 1.09000 * 109.50493 * 296.91012 * 19 18 17 38 38 H 1.09007 * 109.53518 * 176.80816 * 19 18 17 39 39 H 1.09005 * 109.50922 * 298.73886 * 21 20 19 40 40 H 1.08996 * 109.54464 * 178.62808 * 21 20 19 41 41 H 1.08997 * 109.50289 * 302.32305 * 22 17 16 42 42 H 1.09000 * 109.50777 * 62.45645 * 22 17 16 43 43 H 1.09003 * 109.45934 * 294.17025 * 23 10 9 44 44 H 1.09000 * 109.46621 * 54.13950 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9709 -3.6539 1.2533 12 6 4.0512 -4.7339 1.1601 13 6 3.3890 -6.0904 0.9030 14 6 2.5594 -6.0093 -0.3814 15 1 3.2152 -5.7948 -1.2253 16 6 1.8468 -7.3431 -0.6143 17 7 2.8431 -8.3939 -0.8613 18 6 3.5540 -8.1591 -2.1266 19 6 4.6207 -9.2411 -2.3147 20 8 3.9992 -10.5285 -2.2737 21 6 3.2983 -10.7909 -1.0551 22 6 2.2181 -9.7246 -0.8541 23 6 1.5224 -4.8923 -0.2435 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6242 -2.5567 0.8904 26 1 0.6248 -2.5571 -0.8896 27 1 3.4400 -2.6846 1.4221 28 1 2.3002 -3.8820 2.0816 29 1 4.7304 -4.4994 0.3405 30 1 4.6092 -4.7722 2.0956 31 1 4.1572 -6.8558 0.7928 32 1 2.7392 -6.3432 1.7409 33 1 1.2589 -7.5997 0.2669 34 1 1.1878 -7.2569 -1.4783 35 1 2.8460 -8.1981 -2.9544 36 1 4.0303 -7.1791 -2.0999 37 1 5.3586 -9.1675 -1.5158 38 1 5.1123 -9.1047 -3.2780 39 1 3.9977 -10.7624 -0.2195 40 1 2.8329 -11.7751 -1.1068 41 1 1.7194 -9.8873 0.1013 42 1 1.4889 -9.7886 -1.6617 43 1 0.8584 -5.1143 0.5919 44 1 0.9394 -4.8225 -1.1619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069803150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:26 Heat of formation + Delta-G solvation = -50.503284 kcal Electronic energy + Delta-G solvation = -21369.346389 eV Core-core repulsion = 18320.859907 eV Total energy + Delta-G solvation = -3048.486483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.89609 -38.46145 -36.03785 -33.76574 -31.97589 -31.40143 -31.09208 -27.81324 -26.44287 -24.48231 -24.25299 -23.28196 -21.97322 -20.92461 -20.27061 -19.19174 -16.76293 -16.69235 -16.30941 -15.44496 -15.29808 -15.17109 -14.76986 -14.48852 -14.06293 -13.74408 -13.65706 -13.48568 -13.07100 -12.71976 -12.49777 -12.07296 -11.74321 -11.65384 -11.62290 -11.44889 -11.18094 -10.83036 -10.77694 -10.62950 -10.58056 -10.25290 -10.08635 -9.99843 -9.81692 -9.68142 -8.64171 -8.51788 -8.36621 -7.29200 -6.36098 -4.04662 3.44808 3.47310 3.52997 3.65738 3.69154 4.51529 4.60848 4.71018 4.78936 4.90786 4.94771 4.99556 5.11463 5.22745 5.26620 5.32698 5.40034 5.41507 5.53721 5.56263 5.57156 5.62384 5.75474 5.80811 5.83809 5.90540 6.05042 6.19592 6.22425 6.36645 6.42437 6.52091 6.72484 6.73713 6.81659 6.85106 6.92307 7.03085 7.12996 7.83514 8.03517 8.35064 8.60232 8.88147 9.66147 11.03003 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039486 B = 0.003555 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.934323 B = 7873.501797 C = 7947.519541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.072 2.928 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.587 4.587 8 H 0.057 0.943 9 C 0.183 3.817 10 N -0.529 5.529 11 C 0.065 3.935 12 C -0.118 4.118 13 C -0.100 4.100 14 C -0.078 4.078 15 H 0.077 0.923 16 C 0.062 3.938 17 N -0.532 5.532 18 C 0.014 3.986 19 C 0.064 3.936 20 O -0.389 6.389 21 C 0.065 3.935 22 C 0.017 3.983 23 C 0.061 3.939 24 H 0.266 0.734 25 H -0.021 1.021 26 H 0.019 0.981 27 H 0.082 0.918 28 H 0.016 0.984 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.035 0.965 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.019 0.981 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.861 -19.744 -0.886 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.900 3.100 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.625 4.625 8 H 0.075 0.925 9 C 0.058 3.942 10 N -0.253 5.253 11 C -0.063 4.063 12 C -0.156 4.156 13 C -0.138 4.138 14 C -0.097 4.097 15 H 0.095 0.905 16 C -0.066 4.066 17 N -0.257 5.257 18 C -0.114 4.114 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.012 4.012 22 C -0.111 4.111 23 C -0.068 4.068 24 H 0.076 0.924 25 H -0.004 1.004 26 H 0.037 0.963 27 H 0.101 0.899 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.077 0.923 40 H 0.113 0.887 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.341 -18.126 -1.040 19.584 hybrid contribution -1.207 -1.604 0.236 2.021 sum 6.134 -19.730 -0.804 20.677 Atomic orbital electron populations 1.70796 1.06906 1.30347 1.47126 1.25858 0.96493 1.02726 0.93958 0.83493 0.74795 0.75114 0.76553 1.20860 1.21366 1.21469 1.21973 0.94802 0.90949 1.54825 0.92463 1.19803 0.90718 0.89070 0.94642 1.61897 1.27419 1.02035 1.33948 1.21944 0.94985 0.99238 0.90135 1.21650 0.98188 0.94829 1.00965 1.21463 0.98945 0.97056 0.96352 1.21184 0.97290 0.92058 0.99210 0.90505 1.22174 0.92866 0.91229 1.00378 1.62191 1.28590 1.01726 1.33225 1.22858 0.97366 1.00629 0.90585 1.22680 0.94208 0.81977 1.02399 1.87966 1.70163 1.34587 1.38005 1.22641 0.93614 0.97679 0.87297 1.22777 0.96652 0.89863 1.01858 1.22000 0.94657 0.90504 0.99675 0.92378 1.00352 0.96347 0.89949 0.96607 0.91662 0.92491 0.91555 0.93137 0.90815 0.94685 0.94031 0.88865 0.92228 0.88516 0.92295 0.88684 0.89737 0.94119 0.96244 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.17 13.65 55.43 0.76 -27.42 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.59 -16.84 8.43 -34.44 -0.29 -17.13 16 8 H 0.06 1.64 7.14 -52.48 -0.37 1.26 16 9 C 0.18 4.84 4.03 -4.97 -0.02 4.82 16 10 N -0.53 -11.61 4.65 -236.12 -1.10 -12.71 16 11 C 0.07 1.31 5.30 -3.83 -0.02 1.28 16 12 C -0.12 -1.87 6.09 -26.65 -0.16 -2.04 16 13 C -0.10 -1.42 5.14 -26.61 -0.14 -1.56 16 14 C -0.08 -1.14 2.28 -90.53 -0.21 -1.34 16 15 H 0.08 1.18 6.31 -51.93 -0.33 0.85 16 16 C 0.06 0.75 4.35 -3.82 -0.02 0.74 16 17 N -0.53 -5.93 4.23 -234.29 -0.99 -6.92 16 18 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 19 C 0.06 0.62 7.01 37.21 0.26 0.88 16 20 O -0.39 -4.28 10.83 -35.23 -0.38 -4.66 16 21 C 0.06 0.58 7.01 37.21 0.26 0.84 16 22 C 0.02 0.16 5.65 -3.71 -0.02 0.14 16 23 C 0.06 1.11 4.74 -3.84 -0.02 1.09 16 24 H 0.27 8.18 7.22 -40.82 -0.29 7.88 16 25 H -0.02 -0.59 7.99 -51.93 -0.41 -1.01 16 26 H 0.02 0.51 7.85 -51.93 -0.41 0.11 16 27 H 0.08 1.81 6.72 -51.93 -0.35 1.46 16 28 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.88 7.83 -51.93 -0.41 0.47 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 34 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.03 6.29 -51.93 -0.33 0.70 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 42 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 1.15 8.01 -51.93 -0.42 0.74 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -31.21 334.67 -10.26 -41.48 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -8.02 Total: -3.34 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -0.49 Total: -11.87 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.33 Total: -47.05 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.38 Total: -4.66 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.21 -10.26 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069803150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.027 kcal (2) G-P(sol) polarization free energy of solvation -31.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds