Wall clock time and date at job start Mon Mar 30 2020 01:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47358 * 179.97438 * 9 7 2 11 11 C 1.46847 * 110.99834 * 66.03965 * 10 9 7 12 12 C 1.53045 * 109.52047 * 185.84358 * 11 10 9 13 13 C 1.53120 * 109.27825 * 300.82234 * 12 11 10 14 14 C 1.53121 * 109.15871 * 57.65311 * 13 12 11 15 15 H 1.09001 * 109.50237 * 62.28935 * 14 13 12 16 16 C 1.53007 * 109.50050 * 182.36711 * 14 13 12 17 17 N 1.46896 * 109.46911 * 295.00152 * 16 14 13 18 18 C 1.47021 * 111.00072 * 293.63394 * 17 16 14 19 19 C 1.53103 * 109.25541 * 177.60904 * 18 17 16 20 20 O 1.43012 * 109.25870 * 56.85197 * 19 18 17 21 21 C 1.43008 * 113.73926 * 301.32580 * 20 19 18 22 22 C 1.47018 * 110.99986 * 170.00344 * 17 16 14 23 23 C 1.46839 * 111.00039 * 190.25575 * 10 9 7 24 24 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 26 26 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 27 27 H 1.08998 * 109.46487 * 305.85659 * 11 10 9 28 28 H 1.08991 * 109.46153 * 65.84343 * 11 10 9 29 29 H 1.09003 * 109.50287 * 60.76186 * 12 11 10 30 30 H 1.08996 * 109.50332 * 180.84168 * 12 11 10 31 31 H 1.08996 * 109.52651 * 177.56234 * 13 12 11 32 32 H 1.09005 * 109.52191 * 297.75247 * 13 12 11 33 33 H 1.08997 * 109.47145 * 55.00040 * 16 14 13 34 34 H 1.09004 * 109.46899 * 175.00278 * 16 14 13 35 35 H 1.09000 * 109.50561 * 297.54425 * 18 17 16 36 36 H 1.09000 * 109.50244 * 57.67497 * 18 17 16 37 37 H 1.09000 * 109.50493 * 296.91012 * 19 18 17 38 38 H 1.09007 * 109.53518 * 176.80816 * 19 18 17 39 39 H 1.09005 * 109.50922 * 298.73886 * 21 20 19 40 40 H 1.08996 * 109.54464 * 178.62808 * 21 20 19 41 41 H 1.08997 * 109.50289 * 302.32305 * 22 17 16 42 42 H 1.09000 * 109.50777 * 62.45645 * 22 17 16 43 43 H 1.09003 * 109.45934 * 294.17025 * 23 10 9 44 44 H 1.09000 * 109.46621 * 54.13950 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9709 -3.6539 1.2533 12 6 4.0512 -4.7339 1.1601 13 6 3.3890 -6.0904 0.9030 14 6 2.5594 -6.0093 -0.3814 15 1 3.2152 -5.7948 -1.2253 16 6 1.8468 -7.3431 -0.6143 17 7 2.8431 -8.3939 -0.8613 18 6 3.5540 -8.1591 -2.1266 19 6 4.6207 -9.2411 -2.3147 20 8 3.9992 -10.5285 -2.2737 21 6 3.2983 -10.7909 -1.0551 22 6 2.2181 -9.7246 -0.8541 23 6 1.5224 -4.8923 -0.2435 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6242 -2.5567 0.8904 26 1 0.6248 -2.5571 -0.8896 27 1 3.4400 -2.6846 1.4221 28 1 2.3002 -3.8820 2.0816 29 1 4.7304 -4.4994 0.3405 30 1 4.6092 -4.7722 2.0956 31 1 4.1572 -6.8558 0.7928 32 1 2.7392 -6.3432 1.7409 33 1 1.2589 -7.5997 0.2669 34 1 1.1878 -7.2569 -1.4783 35 1 2.8460 -8.1981 -2.9544 36 1 4.0303 -7.1791 -2.0999 37 1 5.3586 -9.1675 -1.5158 38 1 5.1123 -9.1047 -3.2780 39 1 3.9977 -10.7624 -0.2195 40 1 2.8329 -11.7751 -1.1068 41 1 1.7194 -9.8873 0.1013 42 1 1.4889 -9.7886 -1.6617 43 1 0.8584 -5.1143 0.5919 44 1 0.9394 -4.8225 -1.1619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069803150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:25 Heat of formation + Delta-G solvation = -72.311970 kcal Electronic energy + Delta-G solvation = -21370.292085 eV Core-core repulsion = 18320.859907 eV Total energy + Delta-G solvation = -3049.432178 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.82921 -39.79423 -37.14729 -35.58000 -33.70366 -32.50431 -32.08438 -29.03116 -28.23103 -25.82788 -25.07090 -24.91524 -23.57314 -22.20617 -21.30631 -20.51211 -18.87955 -17.58107 -17.13189 -16.88581 -16.28307 -15.99925 -15.87952 -15.85550 -15.63287 -15.32458 -15.06113 -14.83734 -14.49779 -14.05410 -13.65285 -13.49417 -13.33801 -12.95590 -12.84346 -12.72712 -12.51549 -12.45664 -12.28691 -11.93200 -11.87860 -11.59631 -11.44437 -11.37544 -11.14189 -10.75779 -10.63302 -10.56951 -9.40840 -9.13426 -8.70603 -6.41337 1.52442 1.61241 1.80824 2.54109 2.66348 2.95966 3.11156 3.20720 3.74588 3.85185 3.93857 3.95778 4.04691 4.16122 4.20863 4.26785 4.34589 4.37704 4.44600 4.51864 4.59660 4.60480 4.64430 4.70860 4.74222 4.79576 4.83047 4.89640 4.93597 4.97362 5.02211 5.12052 5.14917 5.19852 5.38237 5.49141 5.77291 5.90893 5.96824 5.97936 6.18775 6.38483 6.40390 6.62955 7.39613 8.67994 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.039486 B = 0.003555 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.934323 B = 7873.501797 C = 7947.519541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.038 4.038 3 Si 1.122 2.878 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.598 4.598 8 H 0.056 0.944 9 C 0.194 3.806 10 N -0.537 5.537 11 C 0.065 3.935 12 C -0.108 4.108 13 C -0.091 4.091 14 C -0.067 4.067 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.534 5.534 18 C 0.014 3.986 19 C 0.066 3.934 20 O -0.406 6.406 21 C 0.064 3.936 22 C 0.016 3.984 23 C 0.060 3.940 24 H 0.252 0.748 25 H -0.047 1.047 26 H -0.003 1.003 27 H 0.057 0.943 28 H 0.009 0.991 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.030 0.970 35 H 0.032 0.968 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.017 0.983 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -21.073 -0.552 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.235 4.235 3 Si 0.943 3.057 4 H -0.209 1.209 5 H -0.194 1.194 6 H -0.193 1.193 7 C -0.636 4.636 8 H 0.074 0.926 9 C 0.067 3.933 10 N -0.261 5.261 11 C -0.063 4.063 12 C -0.146 4.146 13 C -0.129 4.129 14 C -0.086 4.086 15 H 0.090 0.910 16 C -0.058 4.058 17 N -0.259 5.259 18 C -0.114 4.114 19 C -0.011 4.011 20 O -0.325 6.325 21 C -0.013 4.013 22 C -0.112 4.112 23 C -0.069 4.069 24 H 0.061 0.939 25 H -0.029 1.029 26 H 0.015 0.985 27 H 0.075 0.925 28 H 0.027 0.973 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.048 0.952 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.082 0.918 40 H 0.133 0.867 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.036 0.964 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.126 -19.504 -0.704 21.545 hybrid contribution -1.790 -1.253 0.132 2.189 sum 7.335 -20.757 -0.572 22.023 Atomic orbital electron populations 1.70931 1.07973 1.29548 1.49117 1.27475 0.96515 1.06801 0.92745 0.82877 0.74033 0.70753 0.78085 1.20862 1.19425 1.19285 1.22282 0.94882 0.92122 1.54360 0.92617 1.19519 0.90827 0.90614 0.92338 1.61855 1.26613 1.02455 1.35175 1.21983 0.95652 0.99749 0.88947 1.21598 0.96737 0.94021 1.02264 1.21411 0.99209 0.96394 0.95882 1.21054 0.96208 0.91791 0.99533 0.91018 1.22004 0.92806 0.90433 1.00544 1.62192 1.28200 1.02069 1.33402 1.22869 0.97472 1.00969 0.90131 1.22737 0.93762 0.81152 1.03411 1.87949 1.70455 1.35024 1.39097 1.22787 0.93410 0.98310 0.86789 1.22856 0.96846 0.89051 1.02399 1.22089 0.95704 0.89972 0.99089 0.93881 1.02917 0.98542 0.92477 0.97263 0.91832 0.90038 0.89520 0.92797 0.90079 0.95221 0.94955 0.89256 0.91730 0.87195 0.91786 0.86747 0.88355 0.94746 0.96429 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.65 21.45 0.29 -58.87 16 2 C -0.04 -2.26 5.46 84.65 0.46 -1.80 16 3 Si 1.12 50.98 29.90 68.60 2.05 53.03 16 4 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.60 -35.08 8.43 25.60 0.22 -34.87 16 8 H 0.06 3.22 7.14 -2.91 -0.02 3.20 16 9 C 0.19 10.66 4.03 85.56 0.35 11.00 16 10 N -0.54 -24.04 4.65 -900.94 -4.19 -28.22 16 11 C 0.06 2.59 5.30 86.33 0.46 3.05 16 12 C -0.11 -3.22 6.09 30.65 0.19 -3.03 16 13 C -0.09 -2.35 5.14 30.67 0.16 -2.19 16 14 C -0.07 -1.85 2.28 -10.74 -0.02 -1.88 16 15 H 0.07 2.10 6.31 -2.39 -0.02 2.09 16 16 C 0.07 1.61 4.35 86.31 0.38 1.99 16 17 N -0.53 -10.71 4.23 -895.17 -3.79 -14.50 16 18 C 0.01 0.27 5.44 86.31 0.47 0.74 16 19 C 0.07 1.14 7.01 72.02 0.50 1.64 16 20 O -0.41 -8.06 10.83 -148.98 -1.61 -9.67 16 21 C 0.06 0.97 7.01 72.02 0.50 1.47 16 22 C 0.02 0.28 5.65 86.31 0.49 0.76 16 23 C 0.06 2.20 4.74 86.33 0.41 2.61 16 24 H 0.25 16.17 7.22 -92.71 -0.67 15.50 16 25 H -0.05 -2.75 7.99 -2.39 -0.02 -2.77 16 26 H 0.00 -0.20 7.85 -2.39 -0.02 -0.22 16 27 H 0.06 2.55 6.72 -2.39 -0.02 2.53 16 28 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.09 1.96 7.83 -2.39 -0.02 1.94 16 32 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.08 1.76 8.04 -2.39 -0.02 1.74 16 34 H 0.03 0.71 8.12 -2.38 -0.02 0.70 16 35 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 1.83 6.29 -2.39 -0.02 1.82 16 37 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 42 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.05 2.06 8.01 -2.39 -0.02 2.04 16 Total: -1.00 -68.15 334.67 -1.65 -69.80 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: 1.04 Total: 8.92 kcal Atomic # 6 Polarization: -25.04 SS G_CDS: 4.55 Total: -20.49 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -7.68 Total: -101.59 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.61 Total: -9.67 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 2.05 Total: 53.03 kcal Total: -68.15 -1.65 -69.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069803150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.509 kcal (2) G-P(sol) polarization free energy of solvation -68.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds