Wall clock time and date at job start Mon Mar 30 2020 01:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 110.05743 * 2 1 4 4 C 1.54264 * 110.03090 * 121.41431 * 2 1 3 5 5 C 1.54897 * 104.19493 * 142.89700 * 4 2 1 6 6 C 1.54889 * 102.74591 * 322.05796 * 5 4 2 7 7 C 1.53873 * 110.03450 * 238.58504 * 2 1 3 8 8 H 1.08994 * 110.03428 * 359.97438 * 7 2 1 9 9 N 1.46498 * 110.07352 * 121.40919 * 7 2 1 10 10 C 1.34774 * 119.99698 * 203.64239 * 9 7 2 11 11 O 1.21595 * 120.00451 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00100 * 180.02562 * 10 9 7 13 13 C 1.46505 * 120.00171 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46855 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.46613 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.46914 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00162 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00177 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99792 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00011 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46793 * 90.00753 * 20 18 16 22 22 H 1.48501 * 109.47060 * 210.00509 * 20 18 16 23 23 H 1.48502 * 109.47342 * 330.00541 * 20 18 16 24 24 H 1.08997 * 109.47390 * 300.03744 * 1 2 3 25 25 H 1.09000 * 109.47137 * 60.04144 * 1 2 3 26 26 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47405 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47417 * 299.96456 * 3 2 1 29 29 H 1.09006 * 109.46959 * 59.96026 * 3 2 1 30 30 H 1.08998 * 110.49036 * 24.22157 * 4 2 1 31 31 H 1.09000 * 110.49063 * 261.57197 * 4 2 1 32 32 H 1.09000 * 110.75568 * 80.37108 * 5 4 2 33 33 H 1.09002 * 110.75327 * 203.73969 * 5 4 2 34 34 H 1.08998 * 110.48466 * 156.62292 * 6 5 4 35 35 H 1.08999 * 110.48474 * 279.26336 * 6 5 4 36 36 H 0.96998 * 120.00347 * 23.64411 * 9 7 2 37 37 H 0.96998 * 119.99945 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.46936 * 299.99891 * 13 12 10 39 39 H 1.08999 * 109.46875 * 59.99738 * 13 12 10 40 40 H 1.09004 * 109.46998 * 299.99696 * 14 13 12 41 41 H 1.08998 * 109.46812 * 60.00313 * 14 13 12 42 42 H 1.08996 * 109.47171 * 299.99942 * 15 14 13 43 43 H 1.09004 * 109.47227 * 60.00225 * 15 14 13 44 44 H 0.97001 * 120.00215 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0583 -0.7554 1.2369 5 6 3.3137 -1.5007 0.7192 6 6 2.8874 -1.9406 -0.7035 7 6 2.0571 -0.7535 -1.2337 8 1 1.2230 -1.1196 -1.8322 9 7 2.9030 0.1305 -2.0393 10 6 3.0812 -0.1193 -3.3517 11 8 2.5394 -1.0781 -3.8672 12 7 3.8599 0.6937 -4.0928 13 6 4.0531 0.4225 -5.5195 14 6 4.9723 1.4874 -6.1211 15 6 5.1746 1.2038 -7.6109 16 6 6.0795 2.2530 -8.2036 17 1 6.4716 3.0428 -7.5801 18 6 6.4079 2.2040 -9.5418 19 7 5.9310 1.2420 -10.3011 20 14 7.5302 3.5042 -10.2764 21 1 8.9422 3.0572 -10.1686 22 1 7.1830 3.7075 -11.7058 23 1 7.3575 4.7813 -9.5386 24 1 -0.3634 0.5144 0.8896 25 1 -0.3633 0.5132 -0.8904 26 1 -0.3634 -1.0276 0.0005 27 1 3.1446 1.4261 0.0005 28 1 1.6971 1.9546 -0.8903 29 1 1.6960 1.9549 0.8897 30 1 1.3142 -1.4660 1.5967 31 1 2.3296 -0.0536 2.0255 32 1 4.1709 -0.8290 0.6752 33 1 3.5325 -2.3678 1.3424 34 1 3.7637 -2.1037 -1.3309 35 1 2.2771 -2.8425 -0.6570 36 1 3.3350 0.8956 -1.6282 37 1 4.2924 1.4584 -3.6816 38 1 4.5056 -0.5612 -5.6443 39 1 3.0890 0.4461 -6.0276 40 1 4.5193 2.4710 -5.9963 41 1 5.9364 1.4642 -5.6130 42 1 5.6277 0.2203 -7.7353 43 1 4.2106 1.2267 -8.1193 44 1 6.1616 1.2077 -11.2427 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078322803.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:15 Heat of formation + Delta-G solvation = -61.333380 kcal Electronic energy + Delta-G solvation = -20577.620265 eV Core-core repulsion = 17528.664153 eV Total energy + Delta-G solvation = -3048.956111 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50832 -38.71002 -35.33709 -33.66686 -33.15564 -32.50392 -31.04897 -28.30245 -27.53404 -26.30245 -24.64775 -23.01270 -21.29942 -20.62075 -20.05096 -19.15802 -17.89907 -16.73070 -16.26300 -15.63552 -15.15689 -15.09616 -14.45745 -14.15908 -14.04299 -13.88159 -13.74964 -13.36698 -13.20572 -12.47548 -12.26439 -12.10199 -11.87467 -11.79181 -11.51776 -11.36201 -11.11448 -10.88969 -10.87264 -10.83563 -10.76876 -10.69317 -10.57296 -10.00511 -9.83259 -9.41232 -9.10564 -9.07040 -8.52797 -8.35684 -6.00304 -4.03354 2.91260 3.31622 3.37923 3.40768 3.44312 4.14143 4.30943 4.39074 4.46213 4.57259 4.92666 5.00225 5.03121 5.08293 5.31258 5.35382 5.35412 5.44048 5.47840 5.54096 5.63347 5.67385 5.70890 5.77546 5.84942 5.85495 5.92889 5.98316 6.06287 6.12006 6.22462 6.58495 6.64271 6.65859 6.86308 7.05861 7.15762 7.65859 7.79078 7.98881 8.23342 8.39859 8.84523 9.03451 9.60683 11.11044 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.042300 B = 0.002811 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.780134 B = 9957.017195 C =10088.680981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.144 4.144 4 C -0.115 4.115 5 C -0.125 4.125 6 C -0.135 4.135 7 C 0.168 3.832 8 H 0.090 0.910 9 N -0.746 5.746 10 C 0.698 3.302 11 O -0.594 6.594 12 N -0.743 5.743 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.395 0.605 37 H 0.392 0.608 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 -1.763 25.257 26.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.152 4.152 5 C -0.162 4.162 6 C -0.174 4.174 7 C 0.062 3.938 8 H 0.108 0.892 9 N -0.405 5.405 10 C 0.397 3.603 11 O -0.472 6.472 12 N -0.397 5.397 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.663 -2.716 24.550 26.175 hybrid contribution 1.086 1.389 -0.169 1.771 sum -7.577 -1.327 24.382 25.566 Atomic orbital electron populations 1.21897 0.93687 1.02083 1.01972 1.21435 0.96078 0.95662 0.94487 1.21876 1.00686 0.95214 1.02359 1.22503 0.97473 0.98834 0.96436 1.22507 0.97540 0.99844 0.96351 1.22804 1.00509 0.97949 0.96135 1.21422 0.92800 0.88998 0.90555 0.89207 1.45538 1.54347 1.32599 1.07973 1.16089 0.80029 0.82997 0.81136 1.90909 1.53518 1.30901 1.71905 1.45393 1.52258 1.30870 1.11228 1.21489 1.00234 0.99875 0.77184 1.21887 0.97247 0.96530 1.00146 1.19027 0.97248 0.97287 0.87812 1.21211 1.29275 1.11312 0.94238 0.92670 1.25031 0.96295 0.95845 0.97317 1.69967 1.44713 1.32306 1.06302 0.86583 0.80962 0.81984 0.78391 1.20671 1.21209 1.19905 0.92401 0.92374 0.92278 0.92403 0.91892 0.92157 0.91248 0.91442 0.91636 0.91583 0.91033 0.90942 0.76836 0.77484 0.92034 0.92036 0.92809 0.92822 0.96257 0.96249 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.15 37.15 0.30 -0.70 16 2 C -0.08 -0.57 0.94 -153.40 -0.14 -0.72 16 3 C -0.14 -0.97 7.03 37.16 0.26 -0.70 16 4 C -0.11 -0.76 5.90 -25.07 -0.15 -0.91 16 5 C -0.12 -0.94 6.91 -24.73 -0.17 -1.11 16 6 C -0.14 -1.34 6.53 -25.07 -0.16 -1.51 16 7 C 0.17 1.75 2.86 -66.81 -0.19 1.56 16 8 H 0.09 1.14 7.14 -51.93 -0.37 0.77 16 9 N -0.75 -8.46 4.53 -57.58 -0.26 -8.72 16 10 C 0.70 10.98 8.56 -86.92 -0.74 10.23 16 11 O -0.59 -11.93 16.02 5.28 0.08 -11.84 16 12 N -0.74 -11.13 5.56 -65.22 -0.36 -11.49 16 13 C 0.14 2.48 5.67 -4.04 -0.02 2.46 16 14 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.36 6.86 -51.93 -0.36 0.00 16 28 H 0.06 0.47 7.78 -51.93 -0.40 0.06 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.43 7.85 -51.93 -0.41 0.02 16 31 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.86 8.04 -51.93 -0.42 0.44 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.39 3.49 5.76 -40.82 -0.24 3.26 16 37 H 0.39 4.70 8.49 -40.82 -0.35 4.35 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 349.27 15.07 5.26 5.26 Total: -1.00 -32.70 349.27 -9.25 -41.95 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.98 Total: 1.49 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.71 Total: -6.93 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.11 Total: -46.51 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.70 -9.25 -41.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078322803.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.379 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds