Wall clock time and date at job start Mon Mar 30 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.05893 * 2 1 4 4 C 1.53867 * 110.03180 * 238.57934 * 2 1 3 5 5 C 1.54269 * 106.60063 * 240.71484 * 4 2 1 6 6 C 1.54883 * 104.19479 * 336.39376 * 5 4 2 7 7 C 1.54270 * 110.03038 * 121.41517 * 2 1 3 8 8 H 1.09000 * 110.59943 * 24.15835 * 7 2 1 9 9 N 1.46504 * 110.48522 * 261.56904 * 7 2 1 10 10 C 1.34777 * 119.99854 * 158.76932 * 9 7 2 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00097 * 180.27545 * 10 9 7 13 13 C 1.46500 * 120.00431 * 179.72742 * 12 10 9 14 14 C 1.52999 * 109.47528 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47306 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47245 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00007 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47169 * 120.00087 * 20 18 16 23 23 H 1.48498 * 109.47035 * 240.00354 * 20 18 16 24 24 H 1.09000 * 109.47102 * 298.58480 * 1 2 3 25 25 H 1.08998 * 109.47214 * 58.58524 * 1 2 3 26 26 H 1.08996 * 109.47126 * 178.58744 * 1 2 3 27 27 H 1.08992 * 109.46992 * 181.41755 * 3 2 1 28 28 H 1.08996 * 109.46451 * 301.41664 * 3 2 1 29 29 H 1.08995 * 109.47175 * 61.41314 * 3 2 1 30 30 H 1.08997 * 110.03268 * 121.43465 * 4 2 1 31 31 H 1.09000 * 110.03341 * 0.02562 * 4 2 1 32 32 H 1.08996 * 110.49014 * 217.71112 * 5 4 2 33 33 H 1.09009 * 110.59583 * 95.12588 * 5 4 2 34 34 H 1.09007 * 110.75854 * 279.62180 * 6 5 4 35 35 H 1.09001 * 110.91663 * 156.33114 * 6 5 4 36 36 H 0.97000 * 120.00410 * 338.77657 * 9 7 2 37 37 H 0.97000 * 120.00112 * 359.73180 * 12 10 9 38 38 H 1.09009 * 109.46712 * 300.00517 * 13 12 10 39 39 H 1.08998 * 109.47207 * 59.99494 * 13 12 10 40 40 H 1.09003 * 109.46366 * 299.99640 * 14 13 12 41 41 H 1.08993 * 109.47533 * 59.99613 * 14 13 12 42 42 H 1.09000 * 109.46924 * 300.00089 * 15 14 13 43 43 H 1.09007 * 109.47220 * 59.99210 * 15 14 13 44 44 H 0.96995 * 120.00094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8875 -1.9407 -0.7034 6 6 3.3136 -1.5008 0.7192 7 6 2.0584 -0.7555 1.2369 8 1 1.3151 -1.4658 1.5989 9 7 2.4231 0.1879 2.2968 10 6 2.4946 -0.2304 3.5760 11 8 2.2570 -1.3909 3.8503 12 7 2.8247 0.6387 4.5518 13 6 2.8966 0.1854 5.9430 14 6 3.2880 1.3596 6.8425 15 6 3.3638 0.8860 8.2953 16 6 3.7500 2.0423 9.1812 17 1 3.9235 3.0176 8.7510 18 6 3.8806 1.8554 10.5409 19 7 3.6688 0.6679 11.0649 20 14 4.3586 3.2890 11.6391 21 1 4.5382 4.5085 10.8109 22 1 3.2873 3.5244 12.6400 23 1 5.6297 2.9738 12.3392 24 1 -0.3633 0.4917 0.9024 25 1 -0.3633 0.5356 -0.8770 26 1 -0.3633 -1.0273 -0.0253 27 1 3.1444 1.4261 -0.0254 28 1 1.6762 1.9621 -0.8770 29 1 1.7175 1.9472 0.9023 30 1 2.6867 -0.0955 -1.8323 31 1 1.2229 -1.1190 -1.8326 32 1 3.7637 -2.1038 -1.3308 33 1 2.2790 -2.8440 -0.6571 34 1 4.1710 -0.8291 0.6753 35 1 3.5344 -2.3660 1.3443 36 1 2.6129 1.1137 2.0780 37 1 3.0145 1.5644 4.3329 38 1 1.9241 -0.1991 6.2506 39 1 3.6433 -0.6040 6.0298 40 1 4.2605 1.7443 6.5349 41 1 2.5412 2.1486 6.7556 42 1 2.3917 0.5008 8.6031 43 1 4.1110 0.0970 8.3818 44 1 3.7611 0.5363 12.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078322808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:17 Heat of formation + Delta-G solvation = -63.987932 kcal Electronic energy + Delta-G solvation = -20516.647888 eV Core-core repulsion = 17467.576667 eV Total energy + Delta-G solvation = -3049.071221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.43142 -38.73854 -35.34714 -33.76941 -33.17200 -32.50229 -31.06163 -27.99120 -27.73963 -26.34646 -24.63353 -23.00084 -21.24503 -20.64088 -20.17170 -19.17998 -17.92529 -16.61964 -16.18914 -15.50017 -15.37867 -14.94412 -14.48309 -14.40799 -14.10529 -13.76997 -13.61126 -13.45251 -13.18150 -12.50204 -12.27229 -12.16923 -11.91047 -11.77327 -11.63220 -11.32435 -11.14796 -10.90377 -10.86050 -10.77349 -10.72666 -10.69803 -10.54806 -10.01782 -9.83669 -9.41787 -9.09329 -9.06783 -8.53288 -8.36064 -6.00534 -4.03508 2.90259 3.30688 3.38116 3.41659 3.43620 4.14971 4.32368 4.38180 4.45871 4.56236 4.95076 4.98824 5.02584 5.05921 5.26289 5.33256 5.35256 5.38339 5.48326 5.56848 5.62345 5.68315 5.73518 5.76812 5.85150 5.86448 5.92350 6.01103 6.09179 6.11282 6.22338 6.58150 6.60895 6.65729 6.86081 7.05714 7.15210 7.65990 7.78913 7.98783 8.22666 8.39759 8.83873 9.03541 9.60621 11.10839 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044355 B = 0.002778 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.123296 B =10077.347660 C =10312.470482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.113 4.113 5 C -0.123 4.123 6 C -0.136 4.136 7 C 0.170 3.830 8 H 0.093 0.907 9 N -0.746 5.746 10 C 0.698 3.302 11 O -0.594 6.594 12 N -0.743 5.743 13 C 0.135 3.865 14 C -0.120 4.120 15 C 0.023 3.977 16 C -0.521 4.521 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.395 0.605 37 H 0.392 0.608 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 0.059 -26.490 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.161 4.161 6 C -0.175 4.175 7 C 0.064 3.936 8 H 0.111 0.889 9 N -0.405 5.405 10 C 0.398 3.602 11 O -0.472 6.472 12 N -0.397 5.397 13 C 0.012 3.988 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.232 0.768 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.711 -1.109 -26.025 26.312 hybrid contribution 0.471 1.624 0.553 1.779 sum -3.239 0.515 -25.472 25.683 Atomic orbital electron populations 1.21918 0.93825 1.02065 1.01885 1.21397 0.95997 0.95648 0.94658 1.21924 1.01190 0.95267 1.02011 1.22250 0.99537 0.96940 0.96402 1.22285 0.99658 0.97998 0.96207 1.22914 0.97977 1.00723 0.95925 1.21670 0.96439 0.90264 0.85258 0.88937 1.45446 1.75977 1.13553 1.05479 1.16079 0.78270 0.85214 0.80618 1.90907 1.56966 1.16944 1.82374 1.45389 1.74514 1.12196 1.07629 1.21491 1.01556 0.98289 0.77453 1.21884 1.00136 0.95860 0.97925 1.19033 0.97618 0.96809 0.87958 1.21245 1.46785 0.95858 0.92049 0.92617 1.25036 0.95498 0.95694 0.98294 1.69980 1.49599 1.21666 1.12045 0.86529 0.78130 0.82647 0.80637 1.19776 1.21012 1.21005 0.92435 0.92498 0.92320 0.92110 0.92021 0.92201 0.91481 0.91446 0.91532 0.91418 0.91349 0.90889 0.76832 0.77475 0.92030 0.92019 0.92814 0.92811 0.96247 0.96245 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 8.16 37.16 0.30 -0.74 16 2 C -0.08 -0.58 0.91 -153.39 -0.14 -0.72 16 3 C -0.15 -0.95 7.08 37.16 0.26 -0.68 16 4 C -0.11 -0.76 6.11 -25.62 -0.16 -0.91 16 5 C -0.12 -0.93 6.83 -25.07 -0.17 -1.11 16 6 C -0.14 -1.36 6.57 -24.74 -0.16 -1.52 16 7 C 0.17 1.78 2.55 -66.27 -0.17 1.61 16 8 H 0.09 1.18 7.38 -51.93 -0.38 0.80 16 9 N -0.75 -8.49 4.97 -57.05 -0.28 -8.77 16 10 C 0.70 11.01 8.56 -86.92 -0.74 10.27 16 11 O -0.59 -11.92 16.05 5.28 0.08 -11.84 16 12 N -0.74 -11.13 5.56 -65.22 -0.36 -11.50 16 13 C 0.14 2.48 5.67 -4.04 -0.02 2.45 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.53 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.66 9.11 -34.44 -0.31 -14.97 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.02 13.29 55.43 0.74 -26.29 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.39 6.61 -51.93 -0.34 0.04 16 30 H 0.07 0.40 7.67 -51.93 -0.40 0.01 16 31 H 0.07 0.41 7.67 -51.93 -0.40 0.01 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.39 3.48 5.77 -40.82 -0.24 3.25 16 37 H 0.39 4.70 8.49 -40.82 -0.35 4.35 16 38 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -32.72 349.73 -9.25 -41.98 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.99 Total: 1.44 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -1.69 Total: -6.87 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.09 Total: -46.56 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.72 -9.25 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078322808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.011 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds