Wall clock time and date at job start Mon Mar 30 2020 01:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 110.05893 * 2 1 4 4 C 1.53867 * 110.03180 * 238.57934 * 2 1 3 5 5 C 1.54269 * 106.60063 * 240.71484 * 4 2 1 6 6 C 1.54883 * 104.19479 * 336.39376 * 5 4 2 7 7 C 1.54270 * 110.03038 * 121.41517 * 2 1 3 8 8 H 1.09000 * 110.59943 * 24.15835 * 7 2 1 9 9 N 1.46504 * 110.48522 * 261.56904 * 7 2 1 10 10 C 1.34777 * 119.99854 * 158.76932 * 9 7 2 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00097 * 180.27545 * 10 9 7 13 13 C 1.46500 * 120.00431 * 179.72742 * 12 10 9 14 14 C 1.52999 * 109.47528 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47306 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47245 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00090 * 0.02562 * 16 15 14 18 18 C 1.37872 * 120.00007 * 179.97438 * 16 15 14 19 19 N 1.31522 * 120.00198 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00191 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47030 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47169 * 120.00087 * 20 18 16 23 23 H 1.48498 * 109.47035 * 240.00354 * 20 18 16 24 24 H 1.09000 * 109.47102 * 298.58480 * 1 2 3 25 25 H 1.08998 * 109.47214 * 58.58524 * 1 2 3 26 26 H 1.08996 * 109.47126 * 178.58744 * 1 2 3 27 27 H 1.08992 * 109.46992 * 181.41755 * 3 2 1 28 28 H 1.08996 * 109.46451 * 301.41664 * 3 2 1 29 29 H 1.08995 * 109.47175 * 61.41314 * 3 2 1 30 30 H 1.08997 * 110.03268 * 121.43465 * 4 2 1 31 31 H 1.09000 * 110.03341 * 0.02562 * 4 2 1 32 32 H 1.08996 * 110.49014 * 217.71112 * 5 4 2 33 33 H 1.09009 * 110.59583 * 95.12588 * 5 4 2 34 34 H 1.09007 * 110.75854 * 279.62180 * 6 5 4 35 35 H 1.09001 * 110.91663 * 156.33114 * 6 5 4 36 36 H 0.97000 * 120.00410 * 338.77657 * 9 7 2 37 37 H 0.97000 * 120.00112 * 359.73180 * 12 10 9 38 38 H 1.09009 * 109.46712 * 300.00517 * 13 12 10 39 39 H 1.08998 * 109.47207 * 59.99494 * 13 12 10 40 40 H 1.09003 * 109.46366 * 299.99640 * 14 13 12 41 41 H 1.08993 * 109.47533 * 59.99613 * 14 13 12 42 42 H 1.09000 * 109.46924 * 300.00089 * 15 14 13 43 43 H 1.09007 * 109.47220 * 59.99210 * 15 14 13 44 44 H 0.96995 * 120.00094 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0548 1.4372 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8875 -1.9407 -0.7034 6 6 3.3136 -1.5008 0.7192 7 6 2.0584 -0.7555 1.2369 8 1 1.3151 -1.4658 1.5989 9 7 2.4231 0.1879 2.2968 10 6 2.4946 -0.2304 3.5760 11 8 2.2570 -1.3909 3.8503 12 7 2.8247 0.6387 4.5518 13 6 2.8966 0.1854 5.9430 14 6 3.2880 1.3596 6.8425 15 6 3.3638 0.8860 8.2953 16 6 3.7500 2.0423 9.1812 17 1 3.9235 3.0176 8.7510 18 6 3.8806 1.8554 10.5409 19 7 3.6688 0.6679 11.0649 20 14 4.3586 3.2890 11.6391 21 1 4.5382 4.5085 10.8109 22 1 3.2873 3.5244 12.6400 23 1 5.6297 2.9738 12.3392 24 1 -0.3633 0.4917 0.9024 25 1 -0.3633 0.5356 -0.8770 26 1 -0.3633 -1.0273 -0.0253 27 1 3.1444 1.4261 -0.0254 28 1 1.6762 1.9621 -0.8770 29 1 1.7175 1.9472 0.9023 30 1 2.6867 -0.0955 -1.8323 31 1 1.2229 -1.1190 -1.8326 32 1 3.7637 -2.1038 -1.3308 33 1 2.2790 -2.8440 -0.6571 34 1 4.1710 -0.8291 0.6753 35 1 3.5344 -2.3660 1.3443 36 1 2.6129 1.1137 2.0780 37 1 3.0145 1.5644 4.3329 38 1 1.9241 -0.1991 6.2506 39 1 3.6433 -0.6040 6.0298 40 1 4.2605 1.7443 6.5349 41 1 2.5412 2.1486 6.7556 42 1 2.3917 0.5008 8.6031 43 1 4.1110 0.0970 8.3818 44 1 3.7611 0.5363 12.0214 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078322808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:17 Heat of formation + Delta-G solvation = -85.023867 kcal Electronic energy + Delta-G solvation = -20517.560074 eV Core-core repulsion = 17467.576667 eV Total energy + Delta-G solvation = -3049.983408 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45135 -39.74833 -36.94918 -35.20540 -34.76857 -33.15180 -32.84386 -29.14817 -28.34174 -27.84918 -25.48907 -24.70053 -22.32911 -22.21725 -21.28643 -20.02811 -19.05679 -18.49391 -17.41334 -16.78406 -16.53119 -16.23633 -15.99413 -15.63002 -15.33524 -14.90719 -14.30937 -14.27512 -14.19760 -13.82226 -13.73904 -13.56881 -13.12179 -12.83073 -12.75305 -12.54363 -12.48222 -12.33154 -11.98849 -11.86499 -11.67016 -11.64319 -11.50494 -11.42341 -11.31499 -11.28304 -11.11882 -10.55939 -10.32095 -9.72023 -8.19301 -6.30880 1.41965 1.42250 1.55485 1.73617 2.15412 2.42262 3.14510 3.32590 3.49256 3.67068 3.87395 4.17117 4.23274 4.31508 4.33816 4.39846 4.44145 4.51912 4.56332 4.72162 4.78506 4.89499 4.95986 4.97228 4.99407 5.02103 5.09814 5.13892 5.17161 5.20904 5.32777 5.36914 5.37623 5.47460 5.52186 5.55104 5.66278 5.71294 5.84659 6.03343 6.22939 6.86750 7.12681 7.38799 7.60542 8.93196 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044355 B = 0.002778 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.123296 B =10077.347660 C =10312.470482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.147 4.147 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.137 4.137 7 C 0.162 3.838 8 H 0.064 0.936 9 N -0.725 5.725 10 C 0.695 3.305 11 O -0.641 6.641 12 N -0.731 5.731 13 C 0.150 3.850 14 C -0.099 4.099 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.258 1.258 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.410 0.590 37 H 0.411 0.589 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.068 0.932 41 H 0.068 0.932 42 H -0.008 1.008 43 H -0.008 1.008 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.101 2.578 -28.544 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.204 4.204 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.175 4.175 7 C 0.057 3.943 8 H 0.082 0.918 9 N -0.384 5.384 10 C 0.394 3.606 11 O -0.523 6.523 12 N -0.387 5.387 13 C 0.025 3.975 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.085 0.915 18 C -0.202 4.202 19 N -0.577 5.577 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.251 0.749 37 H 0.247 0.753 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.010 0.990 43 H 0.010 0.990 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.326 1.470 -28.142 28.376 hybrid contribution 0.333 0.780 1.162 1.439 sum -2.993 2.249 -26.980 27.238 Atomic orbital electron populations 1.21923 0.93710 1.01924 1.02109 1.21377 0.96032 0.96319 0.93291 1.21943 1.01556 0.94179 1.02770 1.22249 0.99915 0.96479 0.95952 1.22273 1.00365 0.98416 0.94667 1.22876 0.97875 0.99692 0.97106 1.21808 0.96286 0.90294 0.85944 0.91767 1.45309 1.74516 1.14560 1.04009 1.16264 0.77988 0.84511 0.81795 1.90881 1.59009 1.19115 1.83298 1.45029 1.74403 1.13083 1.06169 1.21060 1.00068 0.97235 0.79104 1.21582 1.01467 0.96344 0.94350 1.18947 0.95096 0.95719 0.91688 1.21709 1.46458 0.96763 0.92790 0.91465 1.26045 0.95376 0.98633 1.00173 1.70126 1.50793 1.24170 1.12564 0.85347 0.77713 0.79253 0.78407 1.18121 1.20590 1.20579 0.93673 0.90660 0.92830 0.91582 0.90408 0.92294 0.89935 0.90387 0.90181 0.91727 0.90789 0.93733 0.74931 0.75291 0.93680 0.93681 0.91331 0.91319 0.98989 0.98994 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.16 71.98 0.59 -1.27 16 2 C -0.07 -0.92 0.91 -51.46 -0.05 -0.97 16 3 C -0.15 -1.45 7.08 71.98 0.51 -0.94 16 4 C -0.11 -1.15 6.11 31.32 0.19 -0.96 16 5 C -0.12 -1.63 6.83 31.67 0.22 -1.41 16 6 C -0.14 -2.68 6.57 31.88 0.21 -2.47 16 7 C 0.16 3.35 2.55 46.07 0.12 3.46 16 8 H 0.06 1.71 7.38 -2.39 -0.02 1.70 16 9 N -0.73 -15.93 4.97 -452.67 -2.25 -18.18 16 10 C 0.69 21.97 8.56 179.06 1.53 23.50 16 11 O -0.64 -26.73 16.05 -4.01 -0.06 -26.80 16 12 N -0.73 -21.39 5.56 -478.53 -2.66 -24.05 16 13 C 0.15 5.57 5.67 86.38 0.49 6.06 16 14 C -0.10 -3.90 5.27 30.59 0.16 -3.74 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -30.31 9.11 25.60 0.23 -30.08 16 17 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 19 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 20 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.60 6.61 -2.39 -0.02 0.58 16 30 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 31 H 0.08 0.71 7.67 -2.39 -0.02 0.69 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.41 6.41 5.77 -92.71 -0.53 5.88 16 37 H 0.41 8.96 8.49 -92.71 -0.79 8.18 16 38 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 44 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 Total: -1.00 -72.57 349.73 1.79 -70.77 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -0.36 Total: 16.91 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 4.81 Total: -7.25 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -4.62 Total: -99.68 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -72.57 1.79 -70.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078322808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.249 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds