Wall clock time and date at job start Mon Mar 30 2020 01:34:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53003 * 109.46779 * 2 1
4 4 C 1.52997 * 109.47215 * 179.97438 * 3 2 1
5 5 C 1.52995 * 109.47046 * 59.99923 * 4 3 2
6 6 N 1.46506 * 109.47011 * 60.00013 * 5 4 3
7 7 C 1.34773 * 119.99968 * 154.99680 * 6 5 4
8 8 O 1.21283 * 120.00360 * 359.73034 * 7 6 5
9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 5
10 10 N 1.46895 * 109.47182 * 179.72734 * 9 7 6
11 11 C 1.46899 * 110.99967 * 293.94974 * 10 9 7
12 12 C 1.46907 * 111.00018 * 170.00113 * 10 9 7
13 13 C 1.50693 * 109.47341 * 190.00071 * 12 10 9
14 14 H 1.08002 * 119.99863 * 359.97438 * 13 12 10
15 15 C 1.37873 * 120.00237 * 179.97438 * 13 12 10
16 16 N 1.31514 * 119.99722 * 359.97438 * 15 13 12
17 17 Si 1.86799 * 120.00103 * 180.02562 * 15 13 12
18 18 H 1.48499 * 109.47456 * 90.00121 * 17 15 13
19 19 H 1.48504 * 109.46870 * 209.99872 * 17 15 13
20 20 H 1.48504 * 109.47270 * 329.99650 * 17 15 13
21 21 C 1.53000 * 109.47680 * 300.00245 * 5 4 3
22 22 C 1.52998 * 109.47334 * 240.00226 * 2 1 3
23 23 H 1.09002 * 109.47355 * 60.00450 * 1 2 3
24 24 H 1.09008 * 109.47024 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47649 * 299.99638 * 1 2 3
26 26 H 1.09002 * 109.47051 * 120.00005 * 2 1 3
27 27 H 1.09005 * 109.47186 * 59.99985 * 3 2 1
28 28 H 1.08992 * 109.47335 * 299.99825 * 3 2 1
29 29 H 1.09002 * 109.47084 * 300.00292 * 4 3 2
30 30 H 1.08998 * 109.47332 * 180.02562 * 4 3 2
31 31 H 1.08995 * 109.47536 * 180.02562 * 5 4 3
32 32 H 0.96998 * 119.99507 * 335.00535 * 6 5 4
33 33 H 1.09001 * 109.46564 * 299.73030 * 9 7 6
34 34 H 1.08998 * 109.47012 * 59.72084 * 9 7 6
35 35 H 1.08998 * 109.47218 * 60.00734 * 11 10 9
36 36 H 1.09004 * 109.47214 * 180.02562 * 11 10 9
37 37 H 1.08996 * 109.47566 * 300.00424 * 11 10 9
38 38 H 1.08998 * 109.46578 * 309.99766 * 12 10 9
39 39 H 1.08996 * 109.46890 * 69.99467 * 12 10 9
40 40 H 0.97000 * 119.99749 * 180.02562 * 16 15 13
41 41 H 1.08996 * 109.47804 * 179.97438 * 21 5 4
42 42 H 1.09002 * 109.46963 * 299.99945 * 21 5 4
43 43 H 1.08998 * 109.47303 * 299.99964 * 22 2 1
44 44 H 1.09002 * 109.47232 * 59.99889 * 22 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 3.5699 1.4427 0.0006
5 6 4.0804 0.7213 -1.2482
6 7 3.5925 1.4117 -2.4447
7 6 4.2698 1.3089 -3.6054
8 8 5.2859 0.6488 -3.6582
9 6 3.7682 2.0196 -4.8361
10 7 4.6786 1.7567 -5.9585
11 6 5.9967 2.3597 -5.7196
12 6 4.1042 2.2314 -7.2245
13 6 4.9406 1.7319 -8.3742
14 1 5.8120 1.1230 -8.1835
15 6 4.5934 2.0521 -9.6696
16 7 3.5320 2.7932 -9.9017
17 14 5.6298 1.4323 -11.0947
18 1 5.1140 0.1148 -11.5457
19 1 5.5587 2.4022 -12.2170
20 1 7.0407 1.2873 -10.6545
21 6 3.5705 -0.7213 -1.2484
22 6 2.0400 -0.7212 -1.2492
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3634 0.5138 0.8900
26 1 1.8933 -0.5138 0.8900
27 1 1.6765 1.9564 0.8900
28 1 1.6766 1.9563 -0.8899
29 1 3.9329 0.9289 0.8908
30 1 3.9332 2.4703 0.0011
31 1 5.1704 0.7209 -1.2476
32 1 2.7821 1.9429 -2.4015
33 1 2.7710 1.6563 -5.0842
34 1 3.7271 3.0919 -4.6450
35 1 6.4299 1.9385 -4.8124
36 1 6.6508 2.1503 -6.5661
37 1 5.8874 3.4379 -5.6034
38 1 3.0863 1.8550 -7.3253
39 1 4.0910 3.3213 -7.2314
40 1 3.2876 3.0182 -10.8131
41 1 3.9339 -1.2351 -2.1383
42 1 3.9335 -1.2350 -0.3582
43 1 1.6768 -1.7488 -1.2493
44 1 1.6767 -0.2073 -2.1392
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000078637585.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:34:47
Heat of formation + Delta-G solvation = -54.315270 kcal
Electronic energy + Delta-G solvation = -21120.650638 eV
Core-core repulsion = 18071.998855 eV
Total energy + Delta-G solvation = -3048.651783 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.16702 -38.33916 -35.86417 -34.19334 -32.47360 -31.35023 -30.99436 -28.16528
-26.89636 -26.14153 -24.04687 -22.85757 -21.56689 -21.01697 -20.01504 -19.11697
-17.05808 -16.14950 -15.89636 -15.57022 -14.93325 -14.66937 -14.41827 -14.33328
-14.00285 -13.70416 -13.62755 -13.14085 -13.03401 -12.42565 -12.36417 -12.12431
-11.80411 -11.77295 -11.64470 -11.43194 -11.29789 -10.99001 -10.82674 -10.70512
-10.64311 -10.49671 -10.33825 -10.20187 -9.93197 -9.41598 -9.03819 -8.81494
-8.40400 -7.18350 -6.00317 -4.00641 3.06230 3.35367 3.35860 3.41235
3.46704 4.46526 4.46627 4.49546 4.53548 4.86732 5.01601 5.09398
5.14252 5.20239 5.30217 5.35007 5.35920 5.36510 5.43201 5.52481
5.60689 5.75063 5.80224 5.83139 5.86413 5.90291 5.92207 6.05324
6.09839 6.22182 6.26666 6.36751 6.45365 6.69617 6.96638 7.26821
7.33839 7.69330 7.85961 8.09564 8.22861 8.54878 8.66221 9.07589
9.63368 11.10837
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.033297 B = 0.003547 C = 0.003428
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 840.714697 B = 7892.133650 C = 8165.727972
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.092 4.092
3 C -0.115 4.115
4 C -0.126 4.126
5 C 0.148 3.852
6 N -0.734 5.734
7 C 0.515 3.485
8 O -0.519 6.519
9 C 0.036 3.964
10 N -0.523 5.523
11 C 0.034 3.966
12 C 0.193 3.807
13 C -0.504 4.504
14 H 0.065 0.935
15 C 0.054 3.946
16 N -0.901 5.901
17 Si 0.899 3.101
18 H -0.280 1.280
19 H -0.288 1.288
20 H -0.273 1.273
21 C -0.131 4.131
22 C -0.113 4.113
23 H 0.055 0.945
24 H 0.053 0.947
25 H 0.052 0.948
26 H 0.068 0.932
27 H 0.063 0.937
28 H 0.062 0.938
29 H 0.075 0.925
30 H 0.068 0.932
31 H 0.085 0.915
32 H 0.395 0.605
33 H 0.095 0.905
34 H 0.049 0.951
35 H 0.064 0.936
36 H 0.073 0.927
37 H 0.003 0.997
38 H 0.030 0.970
39 H -0.008 1.008
40 H 0.261 0.739
41 H 0.070 0.930
42 H 0.066 0.934
43 H 0.060 0.940
44 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.292 -2.164 22.164 22.890
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.111 4.111
3 C -0.153 4.153
4 C -0.164 4.164
5 C 0.043 3.957
6 N -0.389 5.389
7 C 0.302 3.698
8 O -0.394 6.394
9 C -0.095 4.095
10 N -0.247 5.247
11 C -0.115 4.115
12 C 0.068 3.932
13 C -0.543 4.543
14 H 0.083 0.917
15 C -0.147 4.147
16 N -0.541 5.541
17 Si 0.727 3.273
18 H -0.206 1.206
19 H -0.214 1.214
20 H -0.198 1.198
21 C -0.169 4.169
22 C -0.151 4.151
23 H 0.074 0.926
24 H 0.072 0.928
25 H 0.071 0.929
26 H 0.087 0.913
27 H 0.082 0.918
28 H 0.081 0.919
29 H 0.093 0.907
30 H 0.086 0.914
31 H 0.103 0.897
32 H 0.230 0.770
33 H 0.113 0.887
34 H 0.067 0.933
35 H 0.083 0.917
36 H 0.092 0.908
37 H 0.022 0.978
38 H 0.048 0.952
39 H 0.010 0.990
40 H 0.070 0.930
41 H 0.089 0.911
42 H 0.085 0.915
43 H 0.078 0.922
44 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -4.565 -3.074 21.912 22.592
hybrid contribution -0.177 0.874 -0.781 1.185
sum -4.742 -2.200 21.130 21.767
Atomic orbital electron populations
1.21840 0.95341 1.01684 1.01696 1.21156 0.95337 0.95934 0.98642
1.21599 0.95192 0.96612 1.01895 1.21817 0.96082 1.01005 0.97535
1.20817 0.99360 0.91431 0.84104 1.46190 1.29696 1.53271 1.09719
1.20977 0.83757 0.80968 0.84137 1.90636 1.24261 1.40034 1.84430
1.21952 0.98872 0.97675 0.91050 1.61848 1.01977 1.59434 1.01464
1.22356 0.92216 0.94569 1.02317 1.19787 0.95636 0.93460 0.84341
1.21166 1.11561 1.31495 0.90054 0.91688 1.24981 0.95438 0.95304
0.98942 1.69958 1.25659 1.37907 1.20570 0.86472 0.80693 0.78485
0.81624 1.20613 1.21361 1.19801 1.21925 0.95821 0.96661 1.02542
1.21568 0.95466 1.00259 0.97775 0.92582 0.92769 0.92891 0.91347
0.91813 0.91947 0.90677 0.91362 0.89724 0.77000 0.88691 0.93291
0.91723 0.90807 0.97814 0.95220 0.99044 0.92972 0.91093 0.91518
0.92167 0.91649
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16
2 C -0.09 -0.69 2.72 -90.62 -0.25 -0.94 16
3 C -0.12 -0.82 5.03 -26.73 -0.13 -0.95 16
4 C -0.13 -0.99 5.61 -26.74 -0.15 -1.14 16
5 C 0.15 1.59 2.78 -67.93 -0.19 1.40 16
6 N -0.73 -8.84 4.23 -53.80 -0.23 -9.06 16
7 C 0.51 8.59 7.52 -10.98 -0.08 8.51 16
8 O -0.52 -10.61 13.97 5.56 0.08 -10.54 16
9 C 0.04 0.66 5.45 -4.98 -0.03 0.63 16
10 N -0.52 -12.05 4.49 -245.83 -1.10 -13.15 16
11 C 0.03 0.74 9.03 60.06 0.54 1.28 16
12 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16
13 C -0.50 -14.60 8.46 -34.45 -0.29 -14.89 16
14 H 0.06 1.90 7.12 -52.49 -0.37 1.52 16
15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16
16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16
17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16
18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16
19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16
21 C -0.13 -1.38 5.60 -26.70 -0.15 -1.53 16
22 C -0.11 -1.05 5.05 -26.71 -0.13 -1.18 16
23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
24 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16
25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
28 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16
29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.08 1.08 7.57 -51.93 -0.39 0.68 16
32 H 0.40 3.85 6.87 -40.82 -0.28 3.57 16
33 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16
34 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16
35 H 0.06 1.36 5.88 -51.93 -0.31 1.05 16
36 H 0.07 1.71 6.76 -51.93 -0.35 1.36 16
37 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16
38 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16
39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16
40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16
44 H 0.06 0.67 7.61 -51.93 -0.39 0.28 16
LS Contribution 341.75 15.07 5.15 5.15
Total: -1.00 -32.43 341.75 -8.92 -41.35
By element:
Atomic # 1 Polarization: 6.22 SS G_CDS: -7.89 Total: -1.67 kcal
Atomic # 6 Polarization: -2.30 SS G_CDS: -0.64 Total: -2.94 kcal
Atomic # 7 Polarization: -47.86 SS G_CDS: -0.60 Total: -48.46 kcal
Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.54 kcal
Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -32.43 -8.92 -41.35 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000078637585.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.967 kcal
(2) G-P(sol) polarization free energy of solvation -32.428 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.395 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.315 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds