Wall clock time and date at job start Mon Mar 30 2020 01:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46779 * 2 1 4 4 C 1.52997 * 109.47215 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47046 * 59.99923 * 4 3 2 6 6 N 1.46506 * 109.47011 * 60.00013 * 5 4 3 7 7 C 1.34773 * 119.99968 * 154.99680 * 6 5 4 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 6 5 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.46895 * 109.47182 * 179.72734 * 9 7 6 11 11 C 1.46899 * 110.99967 * 293.94974 * 10 9 7 12 12 C 1.46907 * 111.00018 * 170.00113 * 10 9 7 13 13 C 1.50693 * 109.47341 * 190.00071 * 12 10 9 14 14 H 1.08002 * 119.99863 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00237 * 179.97438 * 13 12 10 16 16 N 1.31514 * 119.99722 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47456 * 90.00121 * 17 15 13 19 19 H 1.48504 * 109.46870 * 209.99872 * 17 15 13 20 20 H 1.48504 * 109.47270 * 329.99650 * 17 15 13 21 21 C 1.53000 * 109.47680 * 300.00245 * 5 4 3 22 22 C 1.52998 * 109.47334 * 240.00226 * 2 1 3 23 23 H 1.09002 * 109.47355 * 60.00450 * 1 2 3 24 24 H 1.09008 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47649 * 299.99638 * 1 2 3 26 26 H 1.09002 * 109.47051 * 120.00005 * 2 1 3 27 27 H 1.09005 * 109.47186 * 59.99985 * 3 2 1 28 28 H 1.08992 * 109.47335 * 299.99825 * 3 2 1 29 29 H 1.09002 * 109.47084 * 300.00292 * 4 3 2 30 30 H 1.08998 * 109.47332 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47536 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99507 * 335.00535 * 6 5 4 33 33 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 34 34 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 35 35 H 1.08998 * 109.47218 * 60.00734 * 11 10 9 36 36 H 1.09004 * 109.47214 * 180.02562 * 11 10 9 37 37 H 1.08996 * 109.47566 * 300.00424 * 11 10 9 38 38 H 1.08998 * 109.46578 * 309.99766 * 12 10 9 39 39 H 1.08996 * 109.46890 * 69.99467 * 12 10 9 40 40 H 0.97000 * 119.99749 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.47804 * 179.97438 * 21 5 4 42 42 H 1.09002 * 109.46963 * 299.99945 * 21 5 4 43 43 H 1.08998 * 109.47303 * 299.99964 * 22 2 1 44 44 H 1.09002 * 109.47232 * 59.99889 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0804 0.7213 -1.2482 6 7 3.5925 1.4117 -2.4447 7 6 4.2698 1.3089 -3.6054 8 8 5.2859 0.6488 -3.6582 9 6 3.7682 2.0196 -4.8361 10 7 4.6786 1.7567 -5.9585 11 6 5.9967 2.3597 -5.7196 12 6 4.1042 2.2314 -7.2245 13 6 4.9406 1.7319 -8.3742 14 1 5.8120 1.1230 -8.1835 15 6 4.5934 2.0521 -9.6696 16 7 3.5320 2.7932 -9.9017 17 14 5.6298 1.4323 -11.0947 18 1 5.1140 0.1148 -11.5457 19 1 5.5587 2.4022 -12.2170 20 1 7.0407 1.2873 -10.6545 21 6 3.5705 -0.7213 -1.2484 22 6 2.0400 -0.7212 -1.2492 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 3.9329 0.9289 0.8908 30 1 3.9332 2.4703 0.0011 31 1 5.1704 0.7209 -1.2476 32 1 2.7821 1.9429 -2.4015 33 1 2.7710 1.6563 -5.0842 34 1 3.7271 3.0919 -4.6450 35 1 6.4299 1.9385 -4.8124 36 1 6.6508 2.1503 -6.5661 37 1 5.8874 3.4379 -5.6034 38 1 3.0863 1.8550 -7.3253 39 1 4.0910 3.3213 -7.2314 40 1 3.2876 3.0182 -10.8131 41 1 3.9339 -1.2351 -2.1383 42 1 3.9335 -1.2350 -0.3582 43 1 1.6768 -1.7488 -1.2493 44 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078637585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:47 Heat of formation + Delta-G solvation = -54.315270 kcal Electronic energy + Delta-G solvation = -21120.650638 eV Core-core repulsion = 18071.998855 eV Total energy + Delta-G solvation = -3048.651783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.16702 -38.33916 -35.86417 -34.19334 -32.47360 -31.35023 -30.99436 -28.16528 -26.89636 -26.14153 -24.04687 -22.85757 -21.56689 -21.01697 -20.01504 -19.11697 -17.05808 -16.14950 -15.89636 -15.57022 -14.93325 -14.66937 -14.41827 -14.33328 -14.00285 -13.70416 -13.62755 -13.14085 -13.03401 -12.42565 -12.36417 -12.12431 -11.80411 -11.77295 -11.64470 -11.43194 -11.29789 -10.99001 -10.82674 -10.70512 -10.64311 -10.49671 -10.33825 -10.20187 -9.93197 -9.41598 -9.03819 -8.81494 -8.40400 -7.18350 -6.00317 -4.00641 3.06230 3.35367 3.35860 3.41235 3.46704 4.46526 4.46627 4.49546 4.53548 4.86732 5.01601 5.09398 5.14252 5.20239 5.30217 5.35007 5.35920 5.36510 5.43201 5.52481 5.60689 5.75063 5.80224 5.83139 5.86413 5.90291 5.92207 6.05324 6.09839 6.22182 6.26666 6.36751 6.45365 6.69617 6.96638 7.26821 7.33839 7.69330 7.85961 8.09564 8.22861 8.54878 8.66221 9.07589 9.63368 11.10837 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033297 B = 0.003547 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.714697 B = 7892.133650 C = 8165.727972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.115 4.115 4 C -0.126 4.126 5 C 0.148 3.852 6 N -0.734 5.734 7 C 0.515 3.485 8 O -0.519 6.519 9 C 0.036 3.964 10 N -0.523 5.523 11 C 0.034 3.966 12 C 0.193 3.807 13 C -0.504 4.504 14 H 0.065 0.935 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.899 3.101 18 H -0.280 1.280 19 H -0.288 1.288 20 H -0.273 1.273 21 C -0.131 4.131 22 C -0.113 4.113 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.395 0.605 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.003 0.997 38 H 0.030 0.970 39 H -0.008 1.008 40 H 0.261 0.739 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.292 -2.164 22.164 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.153 4.153 4 C -0.164 4.164 5 C 0.043 3.957 6 N -0.389 5.389 7 C 0.302 3.698 8 O -0.394 6.394 9 C -0.095 4.095 10 N -0.247 5.247 11 C -0.115 4.115 12 C 0.068 3.932 13 C -0.543 4.543 14 H 0.083 0.917 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.727 3.273 18 H -0.206 1.206 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.169 4.169 22 C -0.151 4.151 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.230 0.770 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.022 0.978 38 H 0.048 0.952 39 H 0.010 0.990 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.078 0.922 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.565 -3.074 21.912 22.592 hybrid contribution -0.177 0.874 -0.781 1.185 sum -4.742 -2.200 21.130 21.767 Atomic orbital electron populations 1.21840 0.95341 1.01684 1.01696 1.21156 0.95337 0.95934 0.98642 1.21599 0.95192 0.96612 1.01895 1.21817 0.96082 1.01005 0.97535 1.20817 0.99360 0.91431 0.84104 1.46190 1.29696 1.53271 1.09719 1.20977 0.83757 0.80968 0.84137 1.90636 1.24261 1.40034 1.84430 1.21952 0.98872 0.97675 0.91050 1.61848 1.01977 1.59434 1.01464 1.22356 0.92216 0.94569 1.02317 1.19787 0.95636 0.93460 0.84341 1.21166 1.11561 1.31495 0.90054 0.91688 1.24981 0.95438 0.95304 0.98942 1.69958 1.25659 1.37907 1.20570 0.86472 0.80693 0.78485 0.81624 1.20613 1.21361 1.19801 1.21925 0.95821 0.96661 1.02542 1.21568 0.95466 1.00259 0.97775 0.92582 0.92769 0.92891 0.91347 0.91813 0.91947 0.90677 0.91362 0.89724 0.77000 0.88691 0.93291 0.91723 0.90807 0.97814 0.95220 0.99044 0.92972 0.91093 0.91518 0.92167 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.09 -0.69 2.72 -90.62 -0.25 -0.94 16 3 C -0.12 -0.82 5.03 -26.73 -0.13 -0.95 16 4 C -0.13 -0.99 5.61 -26.74 -0.15 -1.14 16 5 C 0.15 1.59 2.78 -67.93 -0.19 1.40 16 6 N -0.73 -8.84 4.23 -53.80 -0.23 -9.06 16 7 C 0.51 8.59 7.52 -10.98 -0.08 8.51 16 8 O -0.52 -10.61 13.97 5.56 0.08 -10.54 16 9 C 0.04 0.66 5.45 -4.98 -0.03 0.63 16 10 N -0.52 -12.05 4.49 -245.83 -1.10 -13.15 16 11 C 0.03 0.74 9.03 60.06 0.54 1.28 16 12 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 13 C -0.50 -14.60 8.46 -34.45 -0.29 -14.89 16 14 H 0.06 1.90 7.12 -52.49 -0.37 1.52 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.13 -1.38 5.60 -26.70 -0.15 -1.53 16 22 C -0.11 -1.05 5.05 -26.71 -0.13 -1.18 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 1.08 7.57 -51.93 -0.39 0.68 16 32 H 0.40 3.85 6.87 -40.82 -0.28 3.57 16 33 H 0.09 1.60 7.93 -51.93 -0.41 1.19 16 34 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 35 H 0.06 1.36 5.88 -51.93 -0.31 1.05 16 36 H 0.07 1.71 6.76 -51.93 -0.35 1.36 16 37 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 38 H 0.03 0.82 7.93 -51.93 -0.41 0.41 16 39 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 40 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.67 7.61 -51.93 -0.39 0.28 16 LS Contribution 341.75 15.07 5.15 5.15 Total: -1.00 -32.43 341.75 -8.92 -41.35 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.89 Total: -1.67 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.64 Total: -2.94 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: -0.60 Total: -48.46 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.43 -8.92 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.967 kcal (2) G-P(sol) polarization free energy of solvation -32.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds