Wall clock time and date at job start Mon Mar 30 2020 01:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46779 * 2 1 4 4 C 1.52997 * 109.47215 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47046 * 59.99923 * 4 3 2 6 6 N 1.46506 * 109.47011 * 60.00013 * 5 4 3 7 7 C 1.34773 * 119.99968 * 154.99680 * 6 5 4 8 8 O 1.21283 * 120.00360 * 359.73034 * 7 6 5 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.46895 * 109.47182 * 179.72734 * 9 7 6 11 11 C 1.46899 * 110.99967 * 293.94974 * 10 9 7 12 12 C 1.46907 * 111.00018 * 170.00113 * 10 9 7 13 13 C 1.50693 * 109.47341 * 190.00071 * 12 10 9 14 14 H 1.08002 * 119.99863 * 359.97438 * 13 12 10 15 15 C 1.37873 * 120.00237 * 179.97438 * 13 12 10 16 16 N 1.31514 * 119.99722 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00103 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47456 * 90.00121 * 17 15 13 19 19 H 1.48504 * 109.46870 * 209.99872 * 17 15 13 20 20 H 1.48504 * 109.47270 * 329.99650 * 17 15 13 21 21 C 1.53000 * 109.47680 * 300.00245 * 5 4 3 22 22 C 1.52998 * 109.47334 * 240.00226 * 2 1 3 23 23 H 1.09002 * 109.47355 * 60.00450 * 1 2 3 24 24 H 1.09008 * 109.47024 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47649 * 299.99638 * 1 2 3 26 26 H 1.09002 * 109.47051 * 120.00005 * 2 1 3 27 27 H 1.09005 * 109.47186 * 59.99985 * 3 2 1 28 28 H 1.08992 * 109.47335 * 299.99825 * 3 2 1 29 29 H 1.09002 * 109.47084 * 300.00292 * 4 3 2 30 30 H 1.08998 * 109.47332 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47536 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99507 * 335.00535 * 6 5 4 33 33 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 34 34 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 35 35 H 1.08998 * 109.47218 * 60.00734 * 11 10 9 36 36 H 1.09004 * 109.47214 * 180.02562 * 11 10 9 37 37 H 1.08996 * 109.47566 * 300.00424 * 11 10 9 38 38 H 1.08998 * 109.46578 * 309.99766 * 12 10 9 39 39 H 1.08996 * 109.46890 * 69.99467 * 12 10 9 40 40 H 0.97000 * 119.99749 * 180.02562 * 16 15 13 41 41 H 1.08996 * 109.47804 * 179.97438 * 21 5 4 42 42 H 1.09002 * 109.46963 * 299.99945 * 21 5 4 43 43 H 1.08998 * 109.47303 * 299.99964 * 22 2 1 44 44 H 1.09002 * 109.47232 * 59.99889 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0804 0.7213 -1.2482 6 7 3.5925 1.4117 -2.4447 7 6 4.2698 1.3089 -3.6054 8 8 5.2859 0.6488 -3.6582 9 6 3.7682 2.0196 -4.8361 10 7 4.6786 1.7567 -5.9585 11 6 5.9967 2.3597 -5.7196 12 6 4.1042 2.2314 -7.2245 13 6 4.9406 1.7319 -8.3742 14 1 5.8120 1.1230 -8.1835 15 6 4.5934 2.0521 -9.6696 16 7 3.5320 2.7932 -9.9017 17 14 5.6298 1.4323 -11.0947 18 1 5.1140 0.1148 -11.5457 19 1 5.5587 2.4022 -12.2170 20 1 7.0407 1.2873 -10.6545 21 6 3.5705 -0.7213 -1.2484 22 6 2.0400 -0.7212 -1.2492 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.6766 1.9563 -0.8899 29 1 3.9329 0.9289 0.8908 30 1 3.9332 2.4703 0.0011 31 1 5.1704 0.7209 -1.2476 32 1 2.7821 1.9429 -2.4015 33 1 2.7710 1.6563 -5.0842 34 1 3.7271 3.0919 -4.6450 35 1 6.4299 1.9385 -4.8124 36 1 6.6508 2.1503 -6.5661 37 1 5.8874 3.4379 -5.6034 38 1 3.0863 1.8550 -7.3253 39 1 4.0910 3.3213 -7.2314 40 1 3.2876 3.0182 -10.8131 41 1 3.9339 -1.2351 -2.1383 42 1 3.9335 -1.2350 -0.3582 43 1 1.6768 -1.7488 -1.2493 44 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078637585.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:46 Heat of formation + Delta-G solvation = -75.664714 kcal Electronic energy + Delta-G solvation = -21121.576420 eV Core-core repulsion = 18071.998855 eV Total energy + Delta-G solvation = -3049.577564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26915 -39.45565 -37.58202 -35.21492 -34.62787 -32.33279 -31.71017 -29.87750 -28.67527 -27.02239 -25.91954 -23.58470 -22.96747 -21.99112 -21.50903 -20.00645 -18.71102 -17.97786 -16.99427 -16.82718 -16.48121 -16.11880 -15.66085 -15.43875 -15.29561 -14.91309 -14.84067 -14.25498 -14.15420 -13.80956 -13.62666 -13.30057 -13.16817 -12.89763 -12.79767 -12.64145 -12.58305 -12.40972 -12.35472 -12.30566 -12.03149 -11.96356 -11.44726 -11.36766 -11.07627 -10.94648 -10.64478 -10.60044 -9.94960 -9.01193 -8.21442 -6.30515 1.40864 1.42372 1.53721 1.71285 2.17604 2.42103 3.11096 3.39833 3.74363 3.82790 3.85139 3.96287 4.19805 4.25526 4.32621 4.40793 4.51350 4.53783 4.58626 4.60434 4.67540 4.68774 4.74818 4.89941 5.02987 5.07901 5.12048 5.14809 5.15485 5.18413 5.25308 5.26887 5.32771 5.42272 5.48982 5.60614 5.63958 5.67301 6.01626 6.28229 6.47241 6.71590 6.84123 7.37133 7.39330 8.89536 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033297 B = 0.003547 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.714697 B = 7892.133650 C = 8165.727972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.114 4.114 4 C -0.117 4.117 5 C 0.145 3.855 6 N -0.711 5.711 7 C 0.520 3.480 8 O -0.562 6.562 9 C 0.033 3.967 10 N -0.541 5.541 11 C 0.044 3.956 12 C 0.209 3.791 13 C -0.527 4.527 14 H 0.056 0.944 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.968 3.032 18 H -0.273 1.273 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.128 4.128 22 C -0.111 4.111 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.410 0.590 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.013 0.987 38 H 0.012 0.988 39 H -0.028 1.028 40 H 0.266 0.734 41 H 0.035 0.965 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.799 -1.983 23.660 24.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.152 4.152 4 C -0.155 4.155 5 C 0.040 3.960 6 N -0.366 5.366 7 C 0.306 3.694 8 O -0.440 6.440 9 C -0.098 4.098 10 N -0.265 5.265 11 C -0.104 4.104 12 C 0.083 3.917 13 C -0.566 4.566 14 H 0.074 0.926 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.166 4.166 22 C -0.148 4.148 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.247 0.753 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.030 0.970 39 H -0.011 1.011 40 H 0.075 0.925 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.078 0.922 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.111 -2.879 23.459 24.181 hybrid contribution -0.067 0.808 -1.161 1.416 sum -5.178 -2.071 22.298 22.985 Atomic orbital electron populations 1.21827 0.94807 1.01791 1.02040 1.21122 0.95713 0.96034 0.97693 1.21616 0.94383 0.96405 1.02753 1.21777 0.96655 1.01001 0.96068 1.20971 0.98393 0.91964 0.84631 1.45995 1.29367 1.52397 1.08822 1.20673 0.83439 0.80424 0.84837 1.90622 1.26218 1.42012 1.85141 1.22035 0.98300 0.99269 0.90186 1.61694 1.03117 1.59895 1.01823 1.22231 0.91434 0.95101 1.01679 1.19443 0.94533 0.91877 0.85878 1.21439 1.11797 1.31882 0.91444 0.92586 1.25841 0.96587 0.95245 1.01606 1.70058 1.26949 1.38627 1.21491 0.85408 0.79028 0.78180 0.78152 1.19860 1.20322 1.19299 1.21877 0.96854 0.96239 1.01651 1.21550 0.94279 1.00562 0.98457 0.93053 0.92859 0.91726 0.90459 0.90029 0.92039 0.89092 0.90779 0.91733 0.75291 0.87706 0.91222 0.90894 0.92830 0.96844 0.96955 1.01071 0.92549 0.94617 0.89824 0.92153 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.19 71.98 0.66 -1.03 16 2 C -0.09 -1.08 2.72 -10.79 -0.03 -1.11 16 3 C -0.11 -1.26 5.03 30.59 0.15 -1.11 16 4 C -0.12 -1.51 5.61 30.59 0.17 -1.34 16 5 C 0.14 2.95 2.78 44.99 0.13 3.08 16 6 N -0.71 -16.40 4.23 -442.53 -1.87 -18.28 16 7 C 0.52 17.26 7.52 87.66 0.66 17.92 16 8 O -0.56 -23.33 13.97 -3.04 -0.04 -23.37 16 9 C 0.03 1.20 5.45 85.56 0.47 1.66 16 10 N -0.54 -25.32 4.49 -931.66 -4.18 -29.50 16 11 C 0.04 1.93 9.03 127.69 1.15 3.09 16 12 C 0.21 11.37 4.72 85.55 0.40 11.77 16 13 C -0.53 -31.10 8.46 25.60 0.22 -30.89 16 14 H 0.06 3.34 7.12 -2.91 -0.02 3.32 16 15 C 0.01 0.32 5.46 84.65 0.46 0.78 16 16 N -0.93 -56.13 13.29 21.45 0.28 -55.84 16 17 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 18 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 C -0.13 -2.62 5.60 30.61 0.17 -2.45 16 22 C -0.11 -1.92 5.05 30.61 0.15 -1.77 16 23 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 24 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 28 H 0.06 0.70 6.51 -2.39 -0.02 0.69 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 1.62 7.57 -2.39 -0.02 1.60 16 32 H 0.41 7.22 6.87 -92.71 -0.64 6.59 16 33 H 0.10 3.51 7.93 -2.39 -0.02 3.49 16 34 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 35 H 0.07 3.10 5.88 -2.39 -0.01 3.09 16 36 H 0.05 2.54 6.76 -2.38 -0.02 2.52 16 37 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.01 0.71 7.93 -2.39 -0.02 0.69 16 39 H -0.03 -1.63 8.12 -2.39 -0.02 -1.65 16 40 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.05 1.04 7.61 -2.39 -0.02 1.02 16 Total: -1.00 -70.56 341.75 1.30 -69.25 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.32 Total: 11.65 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.77 Total: -1.40 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -5.77 Total: -103.62 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.04 Total: -23.37 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -70.56 1.30 -69.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078637585.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.410 kcal (2) G-P(sol) polarization free energy of solvation -70.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds