Wall clock time and date at job start Mon Mar 30 2020 01:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99995 * 2 1 4 4 H 1.48504 * 109.47026 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46822 * 299.99480 * 3 2 1 6 6 H 1.48499 * 109.47403 * 59.99612 * 3 2 1 7 7 C 1.37880 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99615 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00122 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46731 * 180.02562 * 9 7 2 11 11 C 1.46903 * 110.99627 * 169.99868 * 10 9 7 12 12 C 1.53008 * 109.46962 * 199.61551 * 11 10 9 13 13 N 1.46906 * 109.46910 * 177.12188 * 12 11 10 14 14 C 1.47011 * 110.99866 * 293.63155 * 13 12 11 15 15 C 1.53091 * 109.25752 * 177.61032 * 14 13 12 16 16 O 1.43015 * 109.25964 * 56.84926 * 15 14 13 17 17 C 1.43012 * 113.73832 * 301.33009 * 16 15 14 18 18 C 1.47010 * 110.99546 * 170.00041 * 13 12 11 19 19 C 1.46898 * 110.99876 * 293.94593 * 10 9 7 20 20 C 1.52998 * 109.47464 * 294.54682 * 19 10 9 21 21 C 1.53001 * 117.49917 * 245.92253 * 20 19 10 22 22 C 1.53003 * 117.49694 * 177.25986 * 20 19 10 23 23 H 0.97004 * 120.00080 * 0.02562 * 1 2 3 24 24 H 1.08990 * 109.47206 * 59.99468 * 9 7 2 25 25 H 1.09003 * 109.46951 * 299.99312 * 9 7 2 26 26 H 1.09000 * 109.47487 * 319.61020 * 11 10 9 27 27 H 1.09001 * 109.47148 * 79.61944 * 11 10 9 28 28 H 1.09000 * 109.46917 * 297.11622 * 12 11 10 29 29 H 1.08999 * 109.47218 * 57.11846 * 12 11 10 30 30 H 1.09000 * 109.50618 * 297.54606 * 14 13 12 31 31 H 1.09003 * 109.50602 * 57.67146 * 14 13 12 32 32 H 1.09003 * 109.50977 * 296.91151 * 15 14 13 33 33 H 1.09001 * 109.54440 * 176.80474 * 15 14 13 34 34 H 1.08996 * 109.50547 * 298.73540 * 17 16 15 35 35 H 1.09002 * 109.54551 * 178.62912 * 17 16 15 36 36 H 1.09005 * 109.50831 * 302.32265 * 18 13 12 37 37 H 1.08997 * 109.51180 * 62.41136 * 18 13 12 38 38 H 1.09009 * 109.47059 * 174.54279 * 19 10 9 39 39 H 1.09007 * 109.46952 * 54.55229 * 19 10 9 40 40 H 1.09000 * 115.54539 * 31.59701 * 20 19 10 41 41 H 1.08997 * 117.49934 * 0.02562 * 21 20 19 42 42 H 1.08997 * 117.49414 * 145.02065 * 21 20 19 43 43 H 1.08994 * 117.49750 * 214.98030 * 22 20 19 44 44 H 1.09003 * 117.49833 * 0.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 1.5209 -4.8934 0.2400 12 6 2.5357 -5.9348 0.7163 13 7 1.8404 -7.1926 1.0204 14 6 0.9444 -7.0335 2.1750 15 6 0.1976 -8.3474 2.4194 16 8 1.1461 -9.4005 2.6112 17 6 2.0344 -9.5836 1.5055 18 6 2.7999 -8.2822 1.2518 19 6 2.9717 -3.6546 -1.2510 20 6 2.0295 -3.9659 -2.4156 21 6 2.2229 -5.2973 -3.1443 22 6 2.6291 -3.9867 -3.8231 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 -0.8895 25 1 0.6240 -2.5567 0.8904 26 1 0.7541 -4.7581 1.0027 27 1 1.0569 -5.2350 -0.6853 28 1 3.2736 -6.1077 -0.0670 29 1 3.0365 -5.5704 1.6132 30 1 1.5304 -6.7782 3.0579 31 1 0.2264 -6.2390 1.9717 32 1 -0.4299 -8.5752 1.5577 33 1 -0.4257 -8.2526 3.3086 34 1 1.4604 -9.8473 0.6172 35 1 2.7401 -10.3825 1.7331 36 1 3.4362 -8.3993 0.3746 37 1 3.4160 -8.0465 2.1195 38 1 3.7364 -4.4287 -1.1853 39 1 3.4469 -2.6877 -1.4165 40 1 1.0105 -3.5943 -2.3081 41 1 3.0210 -5.9516 -2.7937 42 1 1.3310 -5.8014 -3.5164 43 1 2.0043 -3.6293 -4.6416 44 1 3.6948 -3.7791 -3.9193 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081043745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:50 Heat of formation + Delta-G solvation = -28.911125 kcal Electronic energy + Delta-G solvation = -21371.881973 eV Core-core repulsion = 18324.331796 eV Total energy + Delta-G solvation = -3047.550177 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.61946 -39.59471 -37.16570 -36.25016 -34.55066 -32.17476 -31.07545 -29.01406 -27.81325 -26.01885 -24.99685 -23.53683 -23.18445 -22.73520 -21.35156 -20.40736 -18.38785 -17.67227 -17.16597 -17.04006 -16.65992 -16.35052 -15.97980 -15.69489 -15.64676 -15.60612 -14.90240 -14.55242 -14.15553 -13.99082 -13.47568 -13.26968 -13.07789 -12.89428 -12.76546 -12.58048 -12.46637 -12.38214 -12.30723 -12.18774 -12.03072 -11.64176 -11.47344 -11.25062 -11.10536 -10.69589 -10.64083 -10.55357 -9.41019 -8.92257 -8.18938 -6.27789 1.40161 1.40873 1.54071 2.39883 2.66298 2.95317 2.97992 3.14020 3.53874 3.82634 3.90755 3.96676 4.04330 4.09853 4.18368 4.20770 4.27268 4.34324 4.42851 4.52874 4.57738 4.65938 4.74248 4.78530 4.82216 4.85264 4.89361 4.91418 4.99096 5.02501 5.05379 5.10486 5.26184 5.28788 5.33539 5.44866 5.67371 5.90853 6.00391 6.09119 6.18486 6.38137 6.68437 6.88719 7.41388 8.92230 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.020232 B = 0.004603 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.595587 B = 6081.979600 C = 6962.091316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.210 3.790 10 N -0.540 5.540 11 C 0.065 3.935 12 C 0.081 3.919 13 N -0.541 5.541 14 C 0.014 3.986 15 C 0.068 3.932 16 O -0.404 6.404 17 C 0.064 3.936 18 C 0.018 3.982 19 C 0.102 3.898 20 C -0.198 4.198 21 C -0.155 4.155 22 C -0.172 4.172 23 H 0.263 0.737 24 H -0.027 1.027 25 H -0.005 1.005 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.063 0.937 35 H 0.119 0.881 36 H 0.101 0.899 37 H 0.035 0.965 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.105 -17.621 -1.264 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.555 4.555 8 H 0.080 0.920 9 C 0.084 3.916 10 N -0.263 5.263 11 C -0.064 4.064 12 C -0.048 4.048 13 N -0.266 5.266 14 C -0.115 4.115 15 C -0.008 4.008 16 O -0.323 6.323 17 C -0.013 4.013 18 C -0.110 4.110 19 C -0.027 4.027 20 C -0.218 4.218 21 C -0.192 4.192 22 C -0.209 4.209 23 H 0.072 0.928 24 H -0.009 1.009 25 H 0.013 0.987 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.021 -17.675 -1.091 18.407 hybrid contribution -0.289 1.689 -0.083 1.715 sum 4.732 -15.987 -1.174 16.713 Atomic orbital electron populations 1.70093 1.07683 1.27646 1.52192 1.25855 0.95666 1.02996 0.95002 0.85393 0.79079 0.78901 0.77616 1.18695 1.20516 1.20566 1.21475 0.93518 0.91092 1.49405 0.92047 1.19354 0.90191 0.88717 0.93347 1.62160 1.27516 1.02754 1.33879 1.21931 0.95653 0.89341 0.99461 1.21836 0.95389 0.87852 0.99679 1.62167 1.20727 1.05860 1.37875 1.22842 0.97184 0.99654 0.91799 1.22707 0.90596 0.84676 1.02866 1.87940 1.47877 1.54152 1.42337 1.22815 0.92643 0.96213 0.89630 1.22858 0.94582 0.91908 1.01648 1.21634 0.94707 1.00972 0.85356 1.22831 1.00478 1.03212 0.95307 1.23009 1.03306 0.89917 1.02995 1.22948 1.01779 1.01668 0.94538 0.92842 1.00919 0.98735 0.93528 0.94077 0.89904 0.95457 0.94854 0.90181 0.91909 0.87051 0.91858 0.86323 0.88094 0.94665 0.90093 0.92232 0.91283 0.87523 0.88903 0.89093 0.87763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.70 13.29 21.45 0.28 -56.42 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.97 44.62 29.54 68.60 2.03 46.65 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.52 -29.36 8.44 25.60 0.22 -29.15 16 8 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 9 C 0.21 11.24 4.56 85.56 0.39 11.63 16 10 N -0.54 -23.16 4.63 -900.77 -4.17 -27.33 16 11 C 0.06 2.34 4.86 86.31 0.42 2.76 16 12 C 0.08 2.36 5.02 86.30 0.43 2.79 16 13 N -0.54 -13.78 4.73 -895.20 -4.23 -18.01 16 14 C 0.01 0.34 5.44 86.31 0.47 0.81 16 15 C 0.07 1.46 7.01 72.01 0.50 1.96 16 16 O -0.40 -9.22 10.83 -148.98 -1.61 -10.83 16 17 C 0.06 1.14 7.01 72.02 0.50 1.65 16 18 C 0.02 0.36 5.64 86.32 0.49 0.85 16 19 C 0.10 3.81 5.33 86.30 0.46 4.27 16 20 C -0.20 -6.95 3.98 -10.79 -0.04 -7.00 16 21 C -0.16 -4.09 9.88 30.62 0.30 -3.79 16 22 C -0.17 -4.84 10.26 30.62 0.31 -4.52 16 23 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16 24 H -0.03 -1.54 6.12 -2.39 -0.01 -1.56 16 25 H -0.01 -0.32 7.83 -2.39 -0.02 -0.34 16 26 H 0.05 1.81 5.98 -2.39 -0.01 1.80 16 27 H 0.04 1.50 6.32 -2.39 -0.02 1.48 16 28 H 0.08 2.22 6.96 -2.39 -0.02 2.20 16 29 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 2.20 6.33 -2.39 -0.02 2.18 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 2.55 6.73 -2.38 -0.02 2.54 16 39 H 0.06 2.51 6.73 -2.38 -0.02 2.50 16 40 H 0.07 2.96 6.29 -2.39 -0.02 2.94 16 41 H 0.11 2.43 8.04 -2.39 -0.02 2.41 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 Total: -1.00 -64.92 339.46 -1.83 -66.75 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.96 Total: 16.33 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 4.92 Total: -17.13 kcal Atomic # 7 Polarization: -93.64 SS G_CDS: -8.12 Total: -101.76 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -1.61 Total: -10.83 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.92 -1.83 -66.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081043745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal (2) G-P(sol) polarization free energy of solvation -64.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds