Wall clock time and date at job start Mon Mar 30 2020 01:08:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86799 * 119.99995 * 2 1
4 4 H 1.48504 * 109.47026 * 180.02562 * 3 2 1
5 5 H 1.48496 * 109.46822 * 299.99480 * 3 2 1
6 6 H 1.48499 * 109.47403 * 59.99612 * 3 2 1
7 7 C 1.37880 * 119.99703 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99615 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00122 * 0.02562 * 7 2 1
10 10 N 1.46899 * 109.46731 * 180.02562 * 9 7 2
11 11 C 1.46903 * 110.99627 * 169.99868 * 10 9 7
12 12 C 1.53008 * 109.46962 * 199.61551 * 11 10 9
13 13 N 1.46906 * 109.46910 * 177.12188 * 12 11 10
14 14 C 1.47011 * 110.99866 * 293.63155 * 13 12 11
15 15 C 1.53091 * 109.25752 * 177.61032 * 14 13 12
16 16 O 1.43015 * 109.25964 * 56.84926 * 15 14 13
17 17 C 1.43012 * 113.73832 * 301.33009 * 16 15 14
18 18 C 1.47010 * 110.99546 * 170.00041 * 13 12 11
19 19 C 1.46898 * 110.99876 * 293.94593 * 10 9 7
20 20 C 1.52998 * 109.47464 * 294.54682 * 19 10 9
21 21 C 1.53001 * 117.49917 * 245.92253 * 20 19 10
22 22 C 1.53003 * 117.49694 * 177.25986 * 20 19 10
23 23 H 0.97004 * 120.00080 * 0.02562 * 1 2 3
24 24 H 1.08990 * 109.47206 * 59.99468 * 9 7 2
25 25 H 1.09003 * 109.46951 * 299.99312 * 9 7 2
26 26 H 1.09000 * 109.47487 * 319.61020 * 11 10 9
27 27 H 1.09001 * 109.47148 * 79.61944 * 11 10 9
28 28 H 1.09000 * 109.46917 * 297.11622 * 12 11 10
29 29 H 1.08999 * 109.47218 * 57.11846 * 12 11 10
30 30 H 1.09000 * 109.50618 * 297.54606 * 14 13 12
31 31 H 1.09003 * 109.50602 * 57.67146 * 14 13 12
32 32 H 1.09003 * 109.50977 * 296.91151 * 15 14 13
33 33 H 1.09001 * 109.54440 * 176.80474 * 15 14 13
34 34 H 1.08996 * 109.50547 * 298.73540 * 17 16 15
35 35 H 1.09002 * 109.54551 * 178.62912 * 17 16 15
36 36 H 1.09005 * 109.50831 * 302.32265 * 18 13 12
37 37 H 1.08997 * 109.51180 * 62.41136 * 18 13 12
38 38 H 1.09009 * 109.47059 * 174.54279 * 19 10 9
39 39 H 1.09007 * 109.46952 * 54.55229 * 19 10 9
40 40 H 1.09000 * 115.54539 * 31.59701 * 20 19 10
41 41 H 1.08997 * 117.49934 * 0.02562 * 21 20 19
42 42 H 1.08997 * 117.49414 * 145.02065 * 21 20 19
43 43 H 1.08994 * 117.49750 * 214.98030 * 22 20 19
44 44 H 1.09003 * 117.49833 * 0.02562 * 22 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6177 0.0000
4 1 3.7092 1.3463 -0.0006
5 1 1.8904 2.3963 -1.2126
6 1 1.8904 2.3965 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1941 0.0001
9 6 1.2509 -2.4992 0.0005
10 7 2.2056 -3.6157 0.0018
11 6 1.5209 -4.8934 0.2400
12 6 2.5357 -5.9348 0.7163
13 7 1.8404 -7.1926 1.0204
14 6 0.9444 -7.0335 2.1750
15 6 0.1976 -8.3474 2.4194
16 8 1.1461 -9.4005 2.6112
17 6 2.0344 -9.5836 1.5055
18 6 2.7999 -8.2822 1.2518
19 6 2.9717 -3.6546 -1.2510
20 6 2.0295 -3.9659 -2.4156
21 6 2.2229 -5.2973 -3.1443
22 6 2.6291 -3.9867 -3.8231
23 1 -0.4850 0.8401 -0.0004
24 1 0.6246 -2.5571 -0.8895
25 1 0.6240 -2.5567 0.8904
26 1 0.7541 -4.7581 1.0027
27 1 1.0569 -5.2350 -0.6853
28 1 3.2736 -6.1077 -0.0670
29 1 3.0365 -5.5704 1.6132
30 1 1.5304 -6.7782 3.0579
31 1 0.2264 -6.2390 1.9717
32 1 -0.4299 -8.5752 1.5577
33 1 -0.4257 -8.2526 3.3086
34 1 1.4604 -9.8473 0.6172
35 1 2.7401 -10.3825 1.7331
36 1 3.4362 -8.3993 0.3746
37 1 3.4160 -8.0465 2.1195
38 1 3.7364 -4.4287 -1.1853
39 1 3.4469 -2.6877 -1.4165
40 1 1.0105 -3.5943 -2.3081
41 1 3.0210 -5.9516 -2.7937
42 1 1.3310 -5.8014 -3.5164
43 1 2.0043 -3.6293 -4.6416
44 1 3.6948 -3.7791 -3.9193
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000081043745.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:08:50
Heat of formation + Delta-G solvation = -28.911125 kcal
Electronic energy + Delta-G solvation = -21371.881973 eV
Core-core repulsion = 18324.331796 eV
Total energy + Delta-G solvation = -3047.550177 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 268.189 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.61946 -39.59471 -37.16570 -36.25016 -34.55066 -32.17476 -31.07545 -29.01406
-27.81325 -26.01885 -24.99685 -23.53683 -23.18445 -22.73520 -21.35156 -20.40736
-18.38785 -17.67227 -17.16597 -17.04006 -16.65992 -16.35052 -15.97980 -15.69489
-15.64676 -15.60612 -14.90240 -14.55242 -14.15553 -13.99082 -13.47568 -13.26968
-13.07789 -12.89428 -12.76546 -12.58048 -12.46637 -12.38214 -12.30723 -12.18774
-12.03072 -11.64176 -11.47344 -11.25062 -11.10536 -10.69589 -10.64083 -10.55357
-9.41019 -8.92257 -8.18938 -6.27789 1.40161 1.40873 1.54071 2.39883
2.66298 2.95317 2.97992 3.14020 3.53874 3.82634 3.90755 3.96676
4.04330 4.09853 4.18368 4.20770 4.27268 4.34324 4.42851 4.52874
4.57738 4.65938 4.74248 4.78530 4.82216 4.85264 4.89361 4.91418
4.99096 5.02501 5.05379 5.10486 5.26184 5.28788 5.33539 5.44866
5.67371 5.90853 6.00391 6.09119 6.18486 6.38137 6.68437 6.88719
7.41388 8.92230
Molecular weight = 268.19amu
Principal moments of inertia in cm(-1)
A = 0.020232 B = 0.004603 C = 0.004021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1383.595587 B = 6081.979600 C = 6962.091316
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.935 5.935
2 C 0.003 3.997
3 Si 0.965 3.035
4 H -0.263 1.263
5 H -0.279 1.279
6 H -0.280 1.280
7 C -0.517 4.517
8 H 0.061 0.939
9 C 0.210 3.790
10 N -0.540 5.540
11 C 0.065 3.935
12 C 0.081 3.919
13 N -0.541 5.541
14 C 0.014 3.986
15 C 0.068 3.932
16 O -0.404 6.404
17 C 0.064 3.936
18 C 0.018 3.982
19 C 0.102 3.898
20 C -0.198 4.198
21 C -0.155 4.155
22 C -0.172 4.172
23 H 0.263 0.737
24 H -0.027 1.027
25 H -0.005 1.005
26 H 0.046 0.954
27 H 0.041 0.959
28 H 0.083 0.917
29 H 0.027 0.973
30 H 0.033 0.967
31 H 0.080 0.920
32 H 0.063 0.937
33 H 0.112 0.888
34 H 0.063 0.937
35 H 0.119 0.881
36 H 0.101 0.899
37 H 0.035 0.965
38 H 0.081 0.919
39 H 0.059 0.941
40 H 0.069 0.931
41 H 0.106 0.894
42 H 0.092 0.908
43 H 0.091 0.909
44 H 0.104 0.896
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.105 -17.621 -1.264 18.389
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.576 5.576
2 C -0.195 4.195
3 Si 0.790 3.210
4 H -0.187 1.187
5 H -0.205 1.205
6 H -0.206 1.206
7 C -0.555 4.555
8 H 0.080 0.920
9 C 0.084 3.916
10 N -0.263 5.263
11 C -0.064 4.064
12 C -0.048 4.048
13 N -0.266 5.266
14 C -0.115 4.115
15 C -0.008 4.008
16 O -0.323 6.323
17 C -0.013 4.013
18 C -0.110 4.110
19 C -0.027 4.027
20 C -0.218 4.218
21 C -0.192 4.192
22 C -0.209 4.209
23 H 0.072 0.928
24 H -0.009 1.009
25 H 0.013 0.987
26 H 0.065 0.935
27 H 0.059 0.941
28 H 0.101 0.899
29 H 0.045 0.955
30 H 0.051 0.949
31 H 0.098 0.902
32 H 0.081 0.919
33 H 0.129 0.871
34 H 0.081 0.919
35 H 0.137 0.863
36 H 0.119 0.881
37 H 0.053 0.947
38 H 0.099 0.901
39 H 0.078 0.922
40 H 0.087 0.913
41 H 0.125 0.875
42 H 0.111 0.889
43 H 0.109 0.891
44 H 0.122 0.878
Dipole moment (debyes) X Y Z Total
from point charges 5.021 -17.675 -1.091 18.407
hybrid contribution -0.289 1.689 -0.083 1.715
sum 4.732 -15.987 -1.174 16.713
Atomic orbital electron populations
1.70093 1.07683 1.27646 1.52192 1.25855 0.95666 1.02996 0.95002
0.85393 0.79079 0.78901 0.77616 1.18695 1.20516 1.20566 1.21475
0.93518 0.91092 1.49405 0.92047 1.19354 0.90191 0.88717 0.93347
1.62160 1.27516 1.02754 1.33879 1.21931 0.95653 0.89341 0.99461
1.21836 0.95389 0.87852 0.99679 1.62167 1.20727 1.05860 1.37875
1.22842 0.97184 0.99654 0.91799 1.22707 0.90596 0.84676 1.02866
1.87940 1.47877 1.54152 1.42337 1.22815 0.92643 0.96213 0.89630
1.22858 0.94582 0.91908 1.01648 1.21634 0.94707 1.00972 0.85356
1.22831 1.00478 1.03212 0.95307 1.23009 1.03306 0.89917 1.02995
1.22948 1.01779 1.01668 0.94538 0.92842 1.00919 0.98735 0.93528
0.94077 0.89904 0.95457 0.94854 0.90181 0.91909 0.87051 0.91858
0.86323 0.88094 0.94665 0.90093 0.92232 0.91283 0.87523 0.88903
0.89093 0.87763
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -56.70 13.29 21.45 0.28 -56.42 16
2 C 0.00 0.14 5.46 84.66 0.46 0.61 16
3 Si 0.97 44.62 29.54 68.60 2.03 46.65 16
4 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16
5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16
6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16
7 C -0.52 -29.36 8.44 25.60 0.22 -29.15 16
8 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16
9 C 0.21 11.24 4.56 85.56 0.39 11.63 16
10 N -0.54 -23.16 4.63 -900.77 -4.17 -27.33 16
11 C 0.06 2.34 4.86 86.31 0.42 2.76 16
12 C 0.08 2.36 5.02 86.30 0.43 2.79 16
13 N -0.54 -13.78 4.73 -895.20 -4.23 -18.01 16
14 C 0.01 0.34 5.44 86.31 0.47 0.81 16
15 C 0.07 1.46 7.01 72.01 0.50 1.96 16
16 O -0.40 -9.22 10.83 -148.98 -1.61 -10.83 16
17 C 0.06 1.14 7.01 72.02 0.50 1.65 16
18 C 0.02 0.36 5.64 86.32 0.49 0.85 16
19 C 0.10 3.81 5.33 86.30 0.46 4.27 16
20 C -0.20 -6.95 3.98 -10.79 -0.04 -7.00 16
21 C -0.16 -4.09 9.88 30.62 0.30 -3.79 16
22 C -0.17 -4.84 10.26 30.62 0.31 -4.52 16
23 H 0.26 14.98 8.31 -92.70 -0.77 14.21 16
24 H -0.03 -1.54 6.12 -2.39 -0.01 -1.56 16
25 H -0.01 -0.32 7.83 -2.39 -0.02 -0.34 16
26 H 0.05 1.81 5.98 -2.39 -0.01 1.80 16
27 H 0.04 1.50 6.32 -2.39 -0.02 1.48 16
28 H 0.08 2.22 6.96 -2.39 -0.02 2.20 16
29 H 0.03 0.87 8.12 -2.39 -0.02 0.85 16
30 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16
31 H 0.08 2.20 6.33 -2.39 -0.02 2.18 16
32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16
33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16
34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16
36 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16
37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16
38 H 0.08 2.55 6.73 -2.38 -0.02 2.54 16
39 H 0.06 2.51 6.73 -2.38 -0.02 2.50 16
40 H 0.07 2.96 6.29 -2.39 -0.02 2.94 16
41 H 0.11 2.43 8.04 -2.39 -0.02 2.41 16
42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16
43 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16
44 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16
Total: -1.00 -64.92 339.46 -1.83 -66.75
By element:
Atomic # 1 Polarization: 15.37 SS G_CDS: 0.96 Total: 16.33 kcal
Atomic # 6 Polarization: -22.05 SS G_CDS: 4.92 Total: -17.13 kcal
Atomic # 7 Polarization: -93.64 SS G_CDS: -8.12 Total: -101.76 kcal
Atomic # 8 Polarization: -9.22 SS G_CDS: -1.61 Total: -10.83 kcal
Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -64.92 -1.83 -66.75 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000081043745.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.840 kcal
(2) G-P(sol) polarization free energy of solvation -64.920 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.080 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.831 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.751 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds