Wall clock time and date at job start Mon Mar 30 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46731 * 2 1 4 4 C 1.53002 * 109.47293 * 240.00045 * 2 1 3 5 5 C 1.53001 * 109.46946 * 119.99829 * 2 1 3 6 6 N 1.46903 * 109.47050 * 85.27381 * 5 2 1 7 7 C 1.46902 * 111.00140 * 81.27285 * 6 5 2 8 8 C 1.50702 * 109.46964 * 66.58039 * 7 6 5 9 9 H 1.08002 * 120.00015 * 5.09628 * 8 7 6 10 10 C 1.37876 * 119.99857 * 185.08979 * 8 7 6 11 11 N 1.31513 * 119.99999 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99928 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47225 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46803 * 120.00561 * 12 10 8 15 15 H 1.48494 * 109.46951 * 240.00483 * 12 10 8 16 16 C 1.46904 * 110.99674 * 317.31617 * 6 5 2 17 17 C 1.50695 * 109.47074 * 276.79869 * 16 6 5 18 18 N 1.30889 * 125.91531 * 257.18439 * 17 16 6 19 19 C 1.33534 * 109.78457 * 180.02562 * 18 17 16 20 20 O 1.35861 * 125.59027 * 179.97438 * 19 18 17 21 21 N 1.31075 * 108.82293 * 0.26671 * 19 18 17 22 22 N 1.34351 * 125.91154 * 77.23736 * 17 16 6 23 23 H 0.97003 * 126.77611 * 359.95127 * 22 17 16 24 24 H 1.08998 * 109.47474 * 292.90286 * 1 2 3 25 25 H 1.08997 * 109.47602 * 52.90633 * 1 2 3 26 26 H 1.09009 * 109.47131 * 172.90500 * 1 2 3 27 27 H 1.09003 * 109.46881 * 179.97438 * 3 2 1 28 28 H 1.08991 * 109.47210 * 299.99550 * 3 2 1 29 29 H 1.08996 * 109.47351 * 60.00141 * 3 2 1 30 30 H 1.09002 * 109.46532 * 283.98550 * 4 2 1 31 31 H 1.09000 * 109.47066 * 43.98327 * 4 2 1 32 32 H 1.08994 * 109.46927 * 163.98297 * 4 2 1 33 33 H 1.08994 * 109.47404 * 325.26972 * 5 2 1 34 34 H 1.09001 * 109.46960 * 205.26666 * 5 2 1 35 35 H 1.09000 * 109.46434 * 186.58153 * 7 6 5 36 36 H 1.08995 * 109.46838 * 306.58004 * 7 6 5 37 37 H 0.97003 * 119.99957 * 179.97438 * 11 10 8 38 38 H 1.09005 * 109.46678 * 156.79710 * 16 6 5 39 39 H 1.08998 * 109.46858 * 36.80344 * 16 6 5 40 40 H 0.96704 * 113.99459 * 90.00543 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0399 -0.7212 1.2493 6 7 2.0955 -2.1665 0.9919 7 6 3.3184 -2.5244 0.2608 8 6 4.5183 -2.2818 1.1397 9 1 4.3825 -1.9788 2.1674 10 6 5.7895 -2.4468 0.6318 11 7 5.9548 -2.8153 -0.6197 12 14 7.2768 -2.1468 1.7215 13 1 6.8241 -1.7446 3.0774 14 1 8.0795 -3.3925 1.8172 15 1 8.1092 -1.0653 1.1361 16 6 0.8989 -2.6190 0.2699 17 6 -0.2188 -2.8601 1.2515 18 7 -0.6236 -4.0279 1.6824 19 6 -1.6330 -3.8675 2.5418 20 8 -2.2937 -4.8678 3.1810 21 7 -1.8861 -2.5871 2.6626 22 7 -0.9730 -1.9137 1.8350 23 1 -0.9029 -0.9547 1.7072 24 1 -0.3634 0.3999 0.9466 25 1 -0.3634 0.6198 -0.8197 26 1 -0.3634 -1.0199 -0.1269 27 1 3.1299 1.4426 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 1.9269 -1.7975 -1.1189 31 1 1.4640 -0.3977 -2.1162 32 1 3.0924 -0.4823 -1.4025 33 1 1.3648 -0.5262 2.0824 34 1 3.0372 -0.3577 1.4970 35 1 3.2795 -3.5772 -0.0187 36 1 3.3966 -1.9125 -0.6378 37 1 6.8491 -2.9310 -0.9772 38 1 1.1229 -3.5446 -0.2604 39 1 0.5956 -1.8547 -0.4456 40 1 -1.9088 -5.1108 4.0343 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091580709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:02 Heat of formation + Delta-G solvation = 89.445852 kcal Electronic energy + Delta-G solvation = -21863.802426 eV Core-core repulsion = 18717.844250 eV Total energy + Delta-G solvation = -3145.958176 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.42043 -41.09966 -38.40853 -35.70803 -34.47488 -33.39224 -32.64017 -29.52225 -29.31616 -28.18261 -27.47311 -25.74439 -23.59813 -22.70465 -21.74967 -20.07060 -19.53128 -18.61383 -18.48931 -17.33876 -16.83299 -16.52870 -16.31585 -15.83686 -15.52648 -15.06431 -14.58704 -14.49394 -14.17189 -13.57578 -13.31773 -13.11165 -12.99533 -12.79265 -12.70578 -12.64458 -12.50163 -12.35206 -12.23198 -11.95253 -11.75170 -11.47577 -11.32150 -11.16642 -11.11162 -10.97125 -10.61692 -10.50070 -8.81988 -8.13351 -6.19706 0.38357 1.39443 1.40630 1.43813 1.54000 1.59895 2.41756 2.46016 3.19423 3.29269 3.55065 3.75951 3.84833 3.92441 3.97983 4.22123 4.46127 4.48069 4.62152 4.65759 4.74192 4.85601 4.93669 4.96924 5.02240 5.06276 5.10581 5.21811 5.26101 5.36341 5.46245 5.50267 5.53439 5.71359 5.99071 6.13225 6.33493 6.51635 6.60019 6.93964 6.95128 7.47137 8.95777 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.006167 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.584553 B = 4538.883483 C = 5460.812380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.096 4.096 3 C -0.131 4.131 4 C -0.169 4.169 5 C 0.063 3.937 6 N -0.537 5.537 7 C 0.177 3.823 8 C -0.514 4.514 9 H 0.053 0.947 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.954 3.046 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.278 1.278 16 C 0.082 3.918 17 C 0.332 3.668 18 N -0.576 5.576 19 C 0.393 3.607 20 O -0.446 6.446 21 N -0.333 5.333 22 N -0.456 5.456 23 H 0.452 0.548 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.068 0.932 35 H -0.004 1.004 36 H 0.041 0.959 37 H 0.262 0.738 38 H 0.091 0.909 39 H 0.138 0.862 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.312 7.235 1.448 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.098 4.098 3 C -0.189 4.189 4 C -0.225 4.225 5 C -0.065 4.065 6 N -0.261 5.261 7 C 0.053 3.947 8 C -0.553 4.553 9 H 0.071 0.929 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.781 3.219 13 H -0.194 1.194 14 H -0.211 1.211 15 H -0.204 1.204 16 C -0.048 4.048 17 C 0.053 3.947 18 N -0.315 5.315 19 C 0.073 3.927 20 O -0.249 6.249 21 N -0.177 5.177 22 N -0.184 5.184 23 H 0.308 0.692 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.058 0.942 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.014 0.986 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.154 0.846 40 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -13.034 6.744 1.776 14.782 hybrid contribution 1.629 0.474 0.144 1.703 sum -11.405 7.217 1.920 13.633 Atomic orbital electron populations 1.22769 0.93936 1.02570 1.03628 1.21120 0.96067 0.97074 0.95501 1.21781 1.00383 0.94068 1.02675 1.22732 1.00763 1.01355 0.97682 1.22391 1.01763 0.86218 0.96166 1.61921 1.01177 1.15007 1.48014 1.20251 0.85253 0.94974 0.94271 1.21425 0.91179 1.44992 0.97689 0.92922 1.25652 1.01552 0.95443 0.96205 1.70043 1.22952 1.48803 1.15006 0.85559 0.79556 0.77639 0.79195 1.19416 1.21064 1.20389 1.21931 0.87025 1.04332 0.91463 1.24385 0.93007 0.83170 0.94114 1.70293 1.15770 1.27125 1.18316 1.21358 0.90518 0.86274 0.94524 1.84822 1.51821 1.48917 1.39378 1.78022 1.16397 1.06261 1.16996 1.48386 1.24853 1.11242 1.33960 0.69217 0.90933 0.89181 0.91668 0.94158 0.91256 0.91343 0.91159 0.90944 0.93816 0.91511 0.91385 0.98621 0.94178 0.92893 0.89061 0.84580 0.71244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 6.47 71.98 0.47 -2.62 16 2 C -0.10 -2.40 0.77 -52.18 -0.04 -2.44 16 3 C -0.13 -2.94 8.28 71.98 0.60 -2.34 16 4 C -0.17 -4.94 6.19 71.98 0.45 -4.50 16 5 C 0.06 2.02 4.95 86.30 0.43 2.45 16 6 N -0.54 -20.61 4.57 -905.35 -4.14 -24.75 16 7 C 0.18 8.45 4.01 85.56 0.34 8.79 16 8 C -0.51 -27.43 8.11 25.60 0.21 -27.23 16 9 H 0.05 2.84 7.57 -2.91 -0.02 2.82 16 10 C 0.01 0.53 5.46 84.65 0.46 0.99 16 11 N -0.93 -52.77 13.29 21.45 0.28 -52.49 16 12 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 C 0.08 2.64 3.78 85.55 0.32 2.96 16 17 C 0.33 10.68 7.06 138.23 0.98 11.66 16 18 N -0.58 -20.81 11.21 -304.32 -3.41 -24.22 16 19 C 0.39 12.76 9.46 180.57 1.71 14.47 16 20 O -0.45 -11.76 13.66 -91.99 -1.26 -13.02 16 21 N -0.33 -10.28 12.81 -174.94 -2.24 -12.52 16 22 N -0.46 -12.49 6.72 -50.72 -0.34 -12.83 16 23 H 0.45 9.67 4.86 -213.10 -1.04 8.63 16 24 H 0.07 1.05 6.33 -2.39 -0.02 1.03 16 25 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.28 3.36 -2.38 -0.01 1.27 16 27 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 2.29 2.90 -2.39 -0.01 2.28 16 31 H 0.07 1.69 8.04 -2.39 -0.02 1.67 16 32 H 0.04 1.56 7.02 -2.39 -0.02 1.54 16 33 H 0.07 1.91 7.46 -2.39 -0.02 1.89 16 34 H 0.07 2.60 6.46 -2.39 -0.02 2.58 16 35 H 0.00 -0.23 7.78 -2.39 -0.02 -0.25 16 36 H 0.04 1.92 3.83 -2.39 -0.01 1.91 16 37 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 38 H 0.09 3.19 7.59 -2.38 -0.02 3.18 16 39 H 0.14 3.60 2.08 -2.39 0.00 3.60 16 40 H 0.43 6.63 9.06 -74.05 -0.67 5.96 16 Total: -1.00 -67.10 302.82 -3.77 -70.87 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -0.61 Total: 21.57 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 5.91 Total: 2.20 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -9.85 Total: -126.80 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: -1.26 Total: -13.02 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.10 -3.77 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091580709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.316 kcal (2) G-P(sol) polarization free energy of solvation -67.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds