Wall clock time and date at job start Mon Mar 30 2020 01:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47460 * 2 1 4 4 C 1.52998 * 109.47037 * 239.99665 * 2 1 3 5 5 C 1.52997 * 109.47269 * 300.00452 * 4 2 1 6 6 C 1.52999 * 109.47337 * 299.99833 * 5 4 2 7 7 C 1.52993 * 109.46949 * 59.99563 * 6 5 4 8 8 C 1.52997 * 109.47458 * 300.00363 * 7 6 5 9 9 H 1.08998 * 109.47387 * 299.99607 * 8 7 6 10 10 N 1.46904 * 109.46874 * 179.97438 * 8 7 6 11 11 C 1.46899 * 111.00029 * 85.00270 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47174 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47204 * 90.00103 * 20 18 16 22 22 H 1.48497 * 109.46999 * 209.99591 * 20 18 16 23 23 H 1.48495 * 109.47119 * 329.99709 * 20 18 16 24 24 H 1.09002 * 109.47016 * 300.00267 * 1 2 3 25 25 H 1.09000 * 109.47045 * 59.99656 * 1 2 3 26 26 H 1.09001 * 109.47637 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47283 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47272 * 300.00205 * 3 2 1 29 29 H 1.09002 * 109.47224 * 59.99860 * 3 2 1 30 30 H 1.09007 * 109.46977 * 60.00308 * 4 2 1 31 31 H 1.08997 * 109.47328 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47387 * 60.00100 * 5 4 2 33 33 H 1.09002 * 109.47224 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47493 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46646 * 300.00034 * 6 5 4 36 36 H 1.09007 * 109.47122 * 180.02562 * 7 6 5 37 37 H 1.09007 * 109.47061 * 60.00725 * 7 6 5 38 38 H 1.00908 * 110.99583 * 208.95182 * 10 8 7 39 39 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 40 40 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 41 41 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 42 42 H 1.09002 * 109.47021 * 299.99722 * 15 14 12 43 43 H 1.09001 * 109.47001 * 59.99554 * 15 14 12 44 44 H 0.97002 * 119.99768 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0398 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7213 1.2493 10 7 1.5498 -0.0287 2.4484 11 6 2.4330 -0.2743 3.5962 12 6 1.8997 0.4510 4.8048 13 8 0.8841 1.1082 4.7183 14 7 2.5518 0.3701 5.9815 15 6 2.0331 1.0747 7.1564 16 6 2.9392 0.8227 8.3339 17 1 3.8138 0.1997 8.2187 18 6 2.6511 1.3868 9.5586 19 7 1.5858 2.1451 9.6991 20 14 3.7739 1.0739 11.0183 21 1 4.8288 2.1181 11.0642 22 1 2.9795 1.1175 12.2722 23 1 4.4060 -0.2626 10.8790 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7217 -1.2490 32 1 0.4399 -2.1637 -1.2492 33 1 1.8928 -2.6775 -2.1394 34 1 1.6768 -3.9128 -0.0002 35 1 3.1298 -2.8851 0.0000 36 1 1.8936 -2.6774 2.1393 37 1 0.4398 -2.1637 1.2493 38 1 1.4457 0.9604 2.2775 39 1 2.4723 -1.3440 3.8020 40 1 3.4351 0.0888 3.3679 41 1 3.3643 -0.1553 6.0505 42 1 1.9933 2.1443 6.9504 43 1 1.0312 0.7112 7.3850 44 1 1.3833 2.5422 10.5606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094325440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:26 Heat of formation + Delta-G solvation = -65.322778 kcal Electronic energy + Delta-G solvation = -20987.629556 eV Core-core repulsion = 17938.500451 eV Total energy + Delta-G solvation = -3049.129104 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.13584 -38.60251 -34.82486 -34.03996 -33.34993 -32.29233 -29.94876 -27.77854 -27.34514 -26.38178 -25.22401 -22.54660 -21.59543 -21.21119 -19.67721 -18.51585 -17.15762 -16.10459 -15.69518 -15.38245 -15.13293 -14.91897 -14.66020 -14.31113 -14.18647 -13.84839 -13.16661 -12.94254 -12.84080 -12.65379 -12.20847 -12.19127 -12.00514 -11.88201 -11.68871 -11.58369 -11.42035 -11.20874 -11.02731 -10.96679 -10.86443 -10.36476 -10.30598 -10.20371 -10.08188 -9.38283 -8.97800 -8.72013 -8.27440 -7.83590 -6.15486 -4.22360 3.24634 3.30704 3.33241 3.43264 3.84843 4.30878 4.43820 4.47227 4.57906 4.71162 4.91389 5.09341 5.14649 5.20480 5.24495 5.26588 5.35565 5.42986 5.49395 5.51596 5.59386 5.63836 5.67717 5.71364 5.85749 5.88389 5.91288 5.92768 5.98385 6.01849 6.15436 6.23721 6.32646 6.48657 7.05420 7.34667 7.47302 7.51405 7.54570 7.69511 7.98903 8.66560 8.80756 9.15393 9.44468 10.94752 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040511 B = 0.003221 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.000899 B = 8690.665649 C = 8988.916180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.111 4.111 8 C 0.099 3.901 9 H 0.041 0.959 10 N -0.667 5.667 11 C 0.040 3.960 12 C 0.496 3.504 13 O -0.544 6.544 14 N -0.715 5.715 15 C 0.251 3.749 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.351 0.649 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.389 0.611 42 H 0.025 0.975 43 H 0.026 0.974 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.984 -7.799 -21.838 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.207 4.207 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.149 4.149 8 C -0.010 4.010 9 H 0.059 0.941 10 N -0.302 5.302 11 C -0.093 4.093 12 C 0.280 3.720 13 O -0.422 6.422 14 N -0.364 5.364 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.197 1.197 24 H 0.087 0.913 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.173 0.827 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.222 0.778 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.690 -7.672 -21.546 22.934 hybrid contribution 1.807 0.176 0.763 1.970 sum 3.497 -7.495 -20.784 22.369 Atomic orbital electron populations 1.21902 0.93712 1.02242 1.01832 1.20653 0.96827 0.94709 0.94337 1.21964 1.00754 0.95770 1.02256 1.21571 1.00305 0.95475 0.97000 1.21589 1.01241 0.95477 0.97615 1.21532 1.00523 0.98853 0.94754 1.21594 1.01998 0.94235 0.97067 1.21515 0.96495 0.94228 0.88798 0.94109 1.60209 1.49622 1.17372 1.03001 1.21885 0.94679 1.01561 0.91146 1.20386 0.84823 0.82179 0.84571 1.90656 1.24588 1.42077 1.84893 1.46449 1.28039 1.51306 1.10654 1.19078 0.95111 0.92285 0.80525 1.21236 1.10435 1.32101 0.94372 0.91934 1.24958 0.95424 0.94759 0.98917 1.69978 1.25561 1.31698 1.25049 0.86415 0.80286 0.78661 0.81545 1.20490 1.20998 1.19746 0.91348 0.93471 0.92078 0.92863 0.92268 0.92066 0.91933 0.92209 0.91508 0.92378 0.92029 0.92339 0.92140 0.90749 0.82653 0.88756 0.93108 0.77843 0.95658 0.95557 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.62 37.16 0.28 -1.14 16 2 C -0.06 -0.62 0.54 -154.51 -0.08 -0.70 16 3 C -0.15 -1.42 8.24 37.16 0.31 -1.12 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 5 C -0.12 -0.94 5.65 -26.73 -0.15 -1.09 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 7 C -0.11 -1.14 5.15 -26.74 -0.14 -1.28 16 8 C 0.10 1.08 1.66 -67.71 -0.11 0.97 16 9 H 0.04 0.44 7.80 -51.93 -0.41 0.04 16 10 N -0.67 -9.27 5.21 -107.99 -0.56 -9.83 16 11 C 0.04 0.58 5.97 -4.98 -0.03 0.55 16 12 C 0.50 10.01 7.87 -10.98 -0.09 9.92 16 13 O -0.54 -13.27 16.20 5.56 0.09 -13.18 16 14 N -0.72 -15.20 5.55 -61.47 -0.34 -15.54 16 15 C 0.25 6.74 5.43 -5.20 -0.03 6.71 16 16 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 17 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 20 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.66 6.21 -51.93 -0.32 0.33 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.65 7.45 -51.92 -0.39 0.26 16 37 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 38 H 0.35 5.14 5.70 -39.29 -0.22 4.91 16 39 H 0.09 1.24 7.44 -51.93 -0.39 0.85 16 40 H 0.05 0.65 8.06 -51.93 -0.42 0.23 16 41 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 42 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 338.07 15.07 5.09 5.09 Total: -1.00 -31.39 338.07 -8.30 -39.68 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.55 Total: 6.24 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -0.74 Total: -2.82 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.17 Total: -50.95 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.39 -8.30 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094325440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.639 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds