Wall clock time and date at job start Mon Mar 30 2020 01:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47460 * 2 1 4 4 C 1.52998 * 109.47037 * 239.99665 * 2 1 3 5 5 C 1.52997 * 109.47269 * 300.00452 * 4 2 1 6 6 C 1.52999 * 109.47337 * 299.99833 * 5 4 2 7 7 C 1.52993 * 109.46949 * 59.99563 * 6 5 4 8 8 C 1.52997 * 109.47458 * 300.00363 * 7 6 5 9 9 H 1.08998 * 109.47387 * 299.99607 * 8 7 6 10 10 N 1.46904 * 109.46874 * 179.97438 * 8 7 6 11 11 C 1.46899 * 111.00029 * 85.00270 * 10 8 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 8 13 13 O 1.21278 * 119.99985 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00161 * 180.02562 * 12 11 10 15 15 C 1.46496 * 120.00271 * 180.02562 * 14 12 11 16 16 C 1.50701 * 109.47174 * 179.97438 * 15 14 12 17 17 H 1.07998 * 120.00129 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47204 * 90.00103 * 20 18 16 22 22 H 1.48497 * 109.46999 * 209.99591 * 20 18 16 23 23 H 1.48495 * 109.47119 * 329.99709 * 20 18 16 24 24 H 1.09002 * 109.47016 * 300.00267 * 1 2 3 25 25 H 1.09000 * 109.47045 * 59.99656 * 1 2 3 26 26 H 1.09001 * 109.47637 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47283 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47272 * 300.00205 * 3 2 1 29 29 H 1.09002 * 109.47224 * 59.99860 * 3 2 1 30 30 H 1.09007 * 109.46977 * 60.00308 * 4 2 1 31 31 H 1.08997 * 109.47328 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47387 * 60.00100 * 5 4 2 33 33 H 1.09002 * 109.47224 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47493 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46646 * 300.00034 * 6 5 4 36 36 H 1.09007 * 109.47122 * 180.02562 * 7 6 5 37 37 H 1.09007 * 109.47061 * 60.00725 * 7 6 5 38 38 H 1.00908 * 110.99583 * 208.95182 * 10 8 7 39 39 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 40 40 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 41 41 H 0.97005 * 119.99463 * 359.97438 * 14 12 11 42 42 H 1.09002 * 109.47021 * 299.99722 * 15 14 12 43 43 H 1.09001 * 109.47001 * 59.99554 * 15 14 12 44 44 H 0.97002 * 119.99768 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0398 -2.8851 0.0000 7 6 1.5299 -2.1638 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7213 1.2493 10 7 1.5498 -0.0287 2.4484 11 6 2.4330 -0.2743 3.5962 12 6 1.8997 0.4510 4.8048 13 8 0.8841 1.1082 4.7183 14 7 2.5518 0.3701 5.9815 15 6 2.0331 1.0747 7.1564 16 6 2.9392 0.8227 8.3339 17 1 3.8138 0.1997 8.2187 18 6 2.6511 1.3868 9.5586 19 7 1.5858 2.1451 9.6991 20 14 3.7739 1.0739 11.0183 21 1 4.8288 2.1181 11.0642 22 1 2.9795 1.1175 12.2722 23 1 4.4060 -0.2626 10.8790 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -0.2074 -2.1392 31 1 3.1299 -0.7217 -1.2490 32 1 0.4399 -2.1637 -1.2492 33 1 1.8928 -2.6775 -2.1394 34 1 1.6768 -3.9128 -0.0002 35 1 3.1298 -2.8851 0.0000 36 1 1.8936 -2.6774 2.1393 37 1 0.4398 -2.1637 1.2493 38 1 1.4457 0.9604 2.2775 39 1 2.4723 -1.3440 3.8020 40 1 3.4351 0.0888 3.3679 41 1 3.3643 -0.1553 6.0505 42 1 1.9933 2.1443 6.9504 43 1 1.0312 0.7112 7.3850 44 1 1.3833 2.5422 10.5606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094325440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:25 Heat of formation + Delta-G solvation = -87.014538 kcal Electronic energy + Delta-G solvation = -20988.570181 eV Core-core repulsion = 17938.500451 eV Total energy + Delta-G solvation = -3050.069730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05710 -40.18988 -36.25042 -35.63017 -34.34907 -34.09561 -30.95674 -29.49419 -28.17232 -27.46132 -26.38542 -24.40417 -22.57262 -21.90427 -21.37364 -19.51913 -18.75219 -17.64029 -17.18540 -16.87294 -16.39656 -16.17089 -15.64847 -15.51471 -15.44676 -14.88644 -14.52680 -14.23143 -13.99341 -13.84237 -13.72543 -13.41427 -13.12638 -12.95231 -12.91293 -12.75919 -12.70873 -12.32755 -12.28575 -12.23058 -11.97784 -11.77700 -11.49305 -11.07956 -10.97548 -10.84202 -10.80732 -10.65851 -9.82762 -9.31030 -8.29589 -6.46456 1.42720 1.45338 1.56652 1.78913 2.29382 2.50624 3.05192 3.29260 3.69280 3.78667 3.91726 4.02412 4.22255 4.32217 4.39817 4.42137 4.46356 4.49593 4.55276 4.61642 4.78070 4.82412 4.93802 4.99416 5.09357 5.12212 5.12690 5.16778 5.21859 5.23752 5.30505 5.32345 5.44079 5.48311 5.49025 5.53602 5.68125 5.71873 5.84572 6.09566 6.40359 6.64909 6.94257 7.23170 7.51855 8.82722 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040511 B = 0.003221 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.000899 B = 8690.665649 C = 8988.916180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.101 4.101 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.100 3.900 9 H 0.051 0.949 10 N -0.684 5.684 11 C 0.056 3.944 12 C 0.493 3.507 13 O -0.592 6.592 14 N -0.709 5.709 15 C 0.267 3.733 16 C -0.556 4.556 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.255 1.255 24 H 0.041 0.959 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.344 0.656 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.408 0.592 42 H -0.014 1.014 43 H -0.015 1.015 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.393 -9.480 -22.957 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.206 4.206 4 C -0.139 4.139 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.008 4.008 9 H 0.068 0.932 10 N -0.318 5.318 11 C -0.076 4.076 12 C 0.280 3.720 13 O -0.473 6.473 14 N -0.360 5.360 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.178 1.178 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.166 0.834 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.244 0.756 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.135 -9.395 -22.707 24.919 hybrid contribution 0.981 0.721 1.049 1.607 sum 5.117 -8.674 -21.658 23.885 Atomic orbital electron populations 1.21858 0.94466 1.02017 1.01012 1.20653 0.96165 0.94856 0.94634 1.21950 1.01148 0.95671 1.01839 1.21546 1.00667 0.95506 0.96189 1.21590 1.01027 0.95295 0.97904 1.21504 1.00895 0.98963 0.93828 1.21590 1.01127 0.94026 0.98104 1.21610 0.96960 0.94303 0.87976 0.93158 1.60236 1.50259 1.17287 1.04053 1.21793 0.95525 1.01744 0.88500 1.21450 0.83809 0.81276 0.85503 1.90634 1.26828 1.44127 1.85687 1.46187 1.28855 1.51243 1.09717 1.18509 0.93688 0.90383 0.82971 1.21630 1.10941 1.32340 0.94505 0.89763 1.26093 0.96982 0.94115 1.02522 1.70144 1.27833 1.32946 1.26093 0.85139 0.77853 0.79388 0.76729 1.19552 1.20983 1.17849 0.93998 0.92407 0.92008 0.92153 0.91277 0.93904 0.91041 0.91523 0.91932 0.90888 0.91351 0.91598 0.92640 0.92195 0.83397 0.86585 0.90205 0.75637 0.99584 0.99728 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 7.62 71.98 0.55 -2.16 16 2 C -0.06 -1.10 0.54 -52.18 -0.03 -1.13 16 3 C -0.15 -2.64 8.24 71.98 0.59 -2.05 16 4 C -0.10 -1.36 4.73 30.59 0.14 -1.22 16 5 C -0.12 -1.54 5.65 30.59 0.17 -1.37 16 6 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 7 C -0.11 -2.10 5.15 30.59 0.16 -1.94 16 8 C 0.10 2.02 1.66 44.91 0.07 2.10 16 9 H 0.05 0.94 7.80 -2.39 -0.02 0.92 16 10 N -0.68 -18.66 5.21 -495.57 -2.58 -21.24 16 11 C 0.06 1.56 5.97 85.56 0.51 2.07 16 12 C 0.49 20.11 7.87 87.66 0.69 20.80 16 13 O -0.59 -30.16 16.20 -3.02 -0.05 -30.21 16 14 N -0.71 -30.42 5.55 -466.79 -2.59 -33.00 16 15 C 0.27 14.97 5.43 85.63 0.46 15.43 16 16 C -0.56 -30.59 9.28 25.60 0.24 -30.36 16 17 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.13 5.46 84.66 0.46 0.60 16 19 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 20 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 23 H -0.25 -10.20 7.11 99.48 0.71 -9.49 16 24 H 0.04 1.05 7.48 -2.39 -0.02 1.03 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.20 4.81 -2.39 -0.01 1.19 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 0.92 6.21 -2.39 -0.01 0.90 16 30 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.05 1.10 7.45 -2.38 -0.02 1.08 16 37 H 0.06 1.31 6.43 -2.38 -0.02 1.30 16 38 H 0.34 10.23 5.70 -89.69 -0.51 9.72 16 39 H 0.12 2.76 7.44 -2.39 -0.02 2.74 16 40 H 0.08 1.80 8.06 -2.39 -0.02 1.78 16 41 H 0.41 14.29 8.32 -92.70 -0.77 13.52 16 42 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 43 H -0.02 -0.97 8.14 -2.39 -0.02 -0.98 16 44 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -70.71 338.07 1.00 -69.71 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.30 Total: 27.40 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 4.21 Total: -0.65 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.89 Total: -110.83 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.71 1.00 -69.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094325440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.301 kcal (2) G-P(sol) polarization free energy of solvation -70.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds