Wall clock time and date at job start Mon Mar 30 2020 01:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46898 * 109.47123 * 179.97438 * 8 7 6 11 11 C 1.46901 * 110.99830 * 274.99462 * 10 8 7 12 12 C 1.50707 * 109.47036 * 179.97438 * 11 10 8 13 13 O 1.21277 * 120.00002 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99720 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99789 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46859 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00448 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99778 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00299 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47070 * 90.00394 * 20 18 16 22 22 H 1.48500 * 109.47125 * 209.99906 * 20 18 16 23 23 H 1.48496 * 109.47063 * 330.00104 * 20 18 16 24 24 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 29 29 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 31 31 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 34 34 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 35 35 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 38 38 H 1.00900 * 111.00405 * 151.04786 * 10 8 7 39 39 H 1.08992 * 109.47513 * 300.00058 * 11 10 8 40 40 H 1.09010 * 109.46900 * 60.00523 * 11 10 8 41 41 H 0.97006 * 120.00566 * 0.02562 * 14 12 11 42 42 H 1.09002 * 109.47142 * 299.99559 * 15 14 12 43 43 H 1.08994 * 109.47173 * 59.99867 * 15 14 12 44 44 H 0.97000 * 120.00123 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2490 6 6 2.0400 -2.8850 -0.0002 7 6 1.5299 -2.1637 -1.2494 8 6 2.0399 -0.7212 -1.2494 9 1 3.1299 -0.7212 -1.2495 10 7 1.5506 -0.0289 -2.4490 11 6 2.4348 -0.2747 -3.5961 12 6 1.9016 0.4493 -4.8055 13 8 0.8855 1.1059 -4.7202 14 7 2.5541 0.3671 -5.9820 15 6 2.0361 1.0714 -7.1576 16 6 2.9424 0.8180 -8.3346 17 1 3.8165 0.1944 -8.2188 18 6 2.6551 1.3815 -9.5598 19 7 1.5898 2.1397 -9.7013 20 14 3.7788 1.0680 -11.0187 21 1 3.3195 -0.1422 -11.7462 22 1 3.7422 2.2383 -11.9321 23 1 5.1680 0.8589 -10.5375 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6768 -0.2075 2.1392 31 1 3.1300 -0.7217 1.2488 32 1 1.8931 -2.6776 2.1392 33 1 0.4400 -2.1639 1.2491 34 1 3.1299 -2.8850 -0.0003 35 1 1.6770 -3.9128 0.0000 36 1 1.8928 -2.6777 -2.1394 37 1 0.4398 -2.1637 -1.2493 38 1 1.4463 0.9601 -2.2785 39 1 3.4366 0.0884 -3.3671 40 1 2.4742 -1.3446 -3.8017 41 1 3.3666 -0.1583 -6.0504 42 1 1.0341 0.7085 -7.3863 43 1 1.9970 2.1412 -6.9522 44 1 1.3878 2.5365 -10.5631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094325441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:29 Heat of formation + Delta-G solvation = -65.338418 kcal Electronic energy + Delta-G solvation = -20987.221296 eV Core-core repulsion = 17938.091513 eV Total energy + Delta-G solvation = -3049.129783 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.13511 -38.60233 -34.82522 -34.03971 -33.35037 -32.29115 -29.94847 -27.77869 -27.34511 -26.38157 -25.22387 -22.54648 -21.59617 -21.21152 -19.67746 -18.51653 -17.15702 -16.10489 -15.69487 -15.38318 -15.13238 -14.91860 -14.65966 -14.31180 -14.18539 -13.84880 -13.16703 -12.94281 -12.84190 -12.65408 -12.20835 -12.19031 -12.00563 -11.88275 -11.68848 -11.58362 -11.42035 -11.20896 -11.02513 -10.96955 -10.86312 -10.36485 -10.30626 -10.20417 -10.08229 -9.38309 -8.97776 -8.71936 -8.27417 -7.83591 -6.15476 -4.22358 3.24749 3.30699 3.33115 3.43297 3.84810 4.30861 4.43826 4.47201 4.57882 4.71153 4.91386 5.09324 5.14622 5.20458 5.24514 5.26569 5.35553 5.42999 5.49372 5.51597 5.59378 5.63829 5.67716 5.71307 5.85765 5.88370 5.91262 5.92764 5.98367 6.01828 6.15430 6.23725 6.32645 6.48613 7.05415 7.34683 7.47279 7.51435 7.54590 7.69509 7.98908 8.66573 8.80767 9.15398 9.44463 10.94752 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040504 B = 0.003221 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.130392 B = 8691.049871 C = 8989.309816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.065 4.065 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.111 4.111 8 C 0.100 3.900 9 H 0.041 0.959 10 N -0.667 5.667 11 C 0.040 3.960 12 C 0.496 3.504 13 O -0.544 6.544 14 N -0.715 5.715 15 C 0.251 3.749 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 H 0.046 0.954 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.351 0.649 39 H 0.051 0.949 40 H 0.094 0.906 41 H 0.389 0.611 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.980 -7.780 21.847 23.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.065 4.065 3 C -0.207 4.207 4 C -0.144 4.144 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.149 4.149 8 C -0.010 4.010 9 H 0.059 0.941 10 N -0.302 5.302 11 C -0.093 4.093 12 C 0.280 3.720 13 O -0.422 6.422 14 N -0.365 5.365 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.173 0.827 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.222 0.778 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.691 -7.646 21.557 22.935 hybrid contribution 1.797 0.161 -0.766 1.960 sum 3.488 -7.486 20.791 22.371 Atomic orbital electron populations 1.21902 0.93714 1.02240 1.01830 1.20653 0.96826 0.94710 0.94334 1.21963 1.00756 0.95770 1.02256 1.21571 1.00306 0.95475 0.96998 1.21589 1.01240 0.95477 0.97615 1.21532 1.00523 0.98853 0.94753 1.21593 1.01999 0.94235 0.97068 1.21514 0.96497 0.94225 0.88793 0.94118 1.60201 1.49611 1.17375 1.03021 1.21886 0.94671 1.01568 0.91147 1.20385 0.84829 0.82165 0.84578 1.90655 1.24550 1.42086 1.84918 1.46450 1.28049 1.51310 1.10643 1.19077 0.95118 0.92292 0.80510 1.21236 1.10490 1.32058 0.94357 0.91934 1.24960 0.95452 0.94729 0.98919 1.69980 1.25652 1.31699 1.24963 0.86414 0.80689 0.77877 0.81921 1.20454 1.21012 1.19767 0.93476 0.91344 0.92080 0.92864 0.92071 0.92262 0.91930 0.92209 0.92377 0.91508 0.92338 0.92031 0.92139 0.90755 0.82655 0.93100 0.88762 0.77841 0.95562 0.95653 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 7.62 37.16 0.28 -1.13 16 2 C -0.06 -0.62 0.54 -154.51 -0.08 -0.70 16 3 C -0.15 -1.42 8.24 37.15 0.31 -1.12 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 5 C -0.12 -0.94 5.65 -26.73 -0.15 -1.09 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.14 16 7 C -0.11 -1.14 5.15 -26.73 -0.14 -1.28 16 8 C 0.10 1.08 1.66 -67.71 -0.11 0.97 16 9 H 0.04 0.44 7.80 -51.93 -0.40 0.04 16 10 N -0.67 -9.27 5.22 -107.99 -0.56 -9.83 16 11 C 0.04 0.58 5.96 -4.97 -0.03 0.55 16 12 C 0.50 10.01 7.87 -10.98 -0.09 9.92 16 13 O -0.54 -13.27 16.20 5.56 0.09 -13.18 16 14 N -0.72 -15.20 5.55 -61.47 -0.34 -15.54 16 15 C 0.25 6.74 5.43 -5.19 -0.03 6.71 16 16 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 17 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.31 13.29 55.43 0.74 -25.58 16 20 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.83 7.48 -51.93 -0.39 0.44 16 26 H 0.06 0.61 4.81 -51.93 -0.25 0.36 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.65 6.21 -51.93 -0.32 0.33 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.53 6.43 -51.93 -0.33 0.20 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.65 7.45 -51.93 -0.39 0.26 16 37 H 0.07 0.84 6.43 -51.93 -0.33 0.50 16 38 H 0.35 5.14 5.71 -39.29 -0.22 4.91 16 39 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 40 H 0.09 1.24 7.44 -51.92 -0.39 0.85 16 41 H 0.39 7.06 8.32 -40.82 -0.34 6.72 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 338.08 15.07 5.09 5.09 Total: -1.00 -31.39 338.08 -8.30 -39.69 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.55 Total: 6.24 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -0.74 Total: -2.82 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -0.17 Total: -50.96 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.39 -8.30 -39.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094325441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.652 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds