Wall clock time and date at job start Mon Mar 30 2020 01:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46961 * 2 1 4 4 C 1.52997 * 109.47317 * 120.00461 * 2 1 3 5 5 C 1.53000 * 109.47060 * 59.99960 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46898 * 109.47123 * 179.97438 * 8 7 6 11 11 C 1.46901 * 110.99830 * 274.99462 * 10 8 7 12 12 C 1.50707 * 109.47036 * 179.97438 * 11 10 8 13 13 O 1.21277 * 120.00002 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99720 * 180.02562 * 12 11 10 15 15 C 1.46502 * 119.99789 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46859 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00448 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00023 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99778 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00299 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47070 * 90.00394 * 20 18 16 22 22 H 1.48500 * 109.47125 * 209.99906 * 20 18 16 23 23 H 1.48496 * 109.47063 * 330.00104 * 20 18 16 24 24 H 1.09002 * 109.46716 * 299.99630 * 1 2 3 25 25 H 1.09000 * 109.47486 * 59.99547 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47066 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47747 * 300.00196 * 3 2 1 29 29 H 1.09002 * 109.47103 * 60.00608 * 3 2 1 30 30 H 1.09002 * 109.47153 * 299.99641 * 4 2 1 31 31 H 1.09001 * 109.46832 * 179.97438 * 4 2 1 32 32 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 34 34 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 35 35 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 38 38 H 1.00900 * 111.00405 * 151.04786 * 10 8 7 39 39 H 1.08992 * 109.47513 * 300.00058 * 11 10 8 40 40 H 1.09010 * 109.46900 * 60.00523 * 11 10 8 41 41 H 0.97006 * 120.00566 * 0.02562 * 14 12 11 42 42 H 1.09002 * 109.47142 * 299.99559 * 15 14 12 43 43 H 1.08994 * 109.47173 * 59.99867 * 15 14 12 44 44 H 0.97000 * 120.00123 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2490 6 6 2.0400 -2.8850 -0.0002 7 6 1.5299 -2.1637 -1.2494 8 6 2.0399 -0.7212 -1.2494 9 1 3.1299 -0.7212 -1.2495 10 7 1.5506 -0.0289 -2.4490 11 6 2.4348 -0.2747 -3.5961 12 6 1.9016 0.4493 -4.8055 13 8 0.8855 1.1059 -4.7202 14 7 2.5541 0.3671 -5.9820 15 6 2.0361 1.0714 -7.1576 16 6 2.9424 0.8180 -8.3346 17 1 3.8165 0.1944 -8.2188 18 6 2.6551 1.3815 -9.5598 19 7 1.5898 2.1397 -9.7013 20 14 3.7788 1.0680 -11.0187 21 1 3.3195 -0.1422 -11.7462 22 1 3.7422 2.2383 -11.9321 23 1 5.1680 0.8589 -10.5375 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6768 -0.2075 2.1392 31 1 3.1300 -0.7217 1.2488 32 1 1.8931 -2.6776 2.1392 33 1 0.4400 -2.1639 1.2491 34 1 3.1299 -2.8850 -0.0003 35 1 1.6770 -3.9128 0.0000 36 1 1.8928 -2.6777 -2.1394 37 1 0.4398 -2.1637 -1.2493 38 1 1.4463 0.9601 -2.2785 39 1 3.4366 0.0884 -3.3671 40 1 2.4742 -1.3446 -3.8017 41 1 3.3666 -0.1583 -6.0504 42 1 1.0341 0.7085 -7.3863 43 1 1.9970 2.1412 -6.9522 44 1 1.3878 2.5365 -10.5631 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094325441.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:28 Heat of formation + Delta-G solvation = -87.032980 kcal Electronic energy + Delta-G solvation = -20988.162043 eV Core-core repulsion = 17938.091513 eV Total energy + Delta-G solvation = -3050.070529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05645 -40.18961 -36.25011 -35.63077 -34.34789 -34.09581 -30.95638 -29.49425 -28.17215 -27.46139 -26.38519 -24.40412 -22.57330 -21.90458 -21.37399 -19.51971 -18.75200 -17.63979 -17.18492 -16.87422 -16.39528 -16.17126 -15.64907 -15.51320 -15.44696 -14.88669 -14.52706 -14.23077 -13.99357 -13.84272 -13.72648 -13.41398 -13.12739 -12.95554 -12.90832 -12.75992 -12.70932 -12.32771 -12.28506 -12.23019 -11.97776 -11.77706 -11.49297 -11.07950 -10.97579 -10.84238 -10.80700 -10.65839 -9.82754 -9.31033 -8.29571 -6.46455 1.42745 1.45381 1.56583 1.78941 2.29370 2.50612 3.05176 3.29230 3.69266 3.78663 3.91704 4.02413 4.22258 4.32233 4.39813 4.42120 4.46338 4.49601 4.55250 4.61621 4.78007 4.82484 4.93808 4.99382 5.09365 5.12221 5.12673 5.16790 5.21851 5.23768 5.30498 5.32322 5.44060 5.48300 5.49017 5.53591 5.68108 5.71855 5.84570 6.09538 6.40415 6.64906 6.94287 7.23169 7.51860 8.82729 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.040504 B = 0.003221 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.130392 B = 8691.049871 C = 8989.309816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 C -0.149 4.149 4 C -0.101 4.101 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.110 4.110 8 C 0.101 3.899 9 H 0.050 0.950 10 N -0.684 5.684 11 C 0.056 3.944 12 C 0.493 3.507 13 O -0.592 6.592 14 N -0.709 5.709 15 C 0.267 3.733 16 C -0.556 4.556 17 H 0.084 0.916 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.986 3.014 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.255 1.255 24 H 0.057 0.943 25 H 0.041 0.959 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.042 0.958 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.344 0.656 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.408 0.592 42 H -0.015 1.015 43 H -0.014 1.014 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -9.451 22.973 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.063 4.063 3 C -0.206 4.206 4 C -0.139 4.139 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.148 4.148 8 C -0.008 4.008 9 H 0.068 0.932 10 N -0.318 5.318 11 C -0.076 4.076 12 C 0.280 3.720 13 O -0.473 6.473 14 N -0.360 5.360 15 C 0.144 3.856 16 C -0.594 4.594 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.178 1.178 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.166 0.834 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.244 0.756 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.143 -9.359 22.724 24.923 hybrid contribution 0.968 0.700 -1.055 1.594 sum 5.111 -8.659 21.669 23.888 Atomic orbital electron populations 1.21859 0.94467 1.02017 1.01012 1.20653 0.96165 0.94858 0.94630 1.21949 1.01147 0.95670 1.01841 1.21547 1.00668 0.95506 0.96188 1.21591 1.01027 0.95295 0.97903 1.21504 1.00894 0.98963 0.93827 1.21589 1.01128 0.94026 0.98105 1.21609 0.96962 0.94301 0.87971 0.93168 1.60229 1.50241 1.17290 1.04075 1.21794 0.95519 1.01754 0.88497 1.21449 0.83816 0.81257 0.85513 1.90633 1.26791 1.44137 1.85711 1.46188 1.28866 1.51246 1.09705 1.18510 0.93687 0.90397 0.82959 1.21630 1.11002 1.32283 0.94492 0.89762 1.26096 0.97019 0.94086 1.02516 1.70147 1.27911 1.32957 1.26012 0.85139 0.78923 0.77734 0.77310 1.19607 1.20957 1.17819 0.92412 0.93993 0.92009 0.92156 0.93908 0.91269 0.91036 0.91523 0.90887 0.91931 0.91597 0.91352 0.92642 0.92201 0.83400 0.90199 0.86590 0.75635 0.99741 0.99566 0.92250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 7.62 71.98 0.55 -2.16 16 2 C -0.06 -1.10 0.54 -52.18 -0.03 -1.13 16 3 C -0.15 -2.64 8.24 71.98 0.59 -2.05 16 4 C -0.10 -1.36 4.73 30.59 0.14 -1.22 16 5 C -0.12 -1.54 5.65 30.59 0.17 -1.37 16 6 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 7 C -0.11 -2.10 5.15 30.59 0.16 -1.94 16 8 C 0.10 2.03 1.66 44.92 0.07 2.10 16 9 H 0.05 0.94 7.80 -2.39 -0.02 0.92 16 10 N -0.68 -18.66 5.22 -495.56 -2.58 -21.25 16 11 C 0.06 1.56 5.96 85.56 0.51 2.07 16 12 C 0.49 20.11 7.87 87.66 0.69 20.80 16 13 O -0.59 -30.16 16.20 -3.02 -0.05 -30.21 16 14 N -0.71 -30.41 5.55 -466.78 -2.59 -33.00 16 15 C 0.27 14.97 5.43 85.63 0.46 15.43 16 16 C -0.56 -30.59 9.28 25.60 0.24 -30.35 16 17 H 0.08 4.16 7.60 -2.91 -0.02 4.14 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 20 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 21 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.04 1.05 7.48 -2.39 -0.02 1.03 16 26 H 0.06 1.20 4.81 -2.39 -0.01 1.19 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.04 0.92 6.21 -2.39 -0.01 0.90 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 1.10 7.45 -2.39 -0.02 1.08 16 37 H 0.06 1.31 6.43 -2.39 -0.02 1.29 16 38 H 0.34 10.23 5.71 -89.69 -0.51 9.72 16 39 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 40 H 0.12 2.76 7.44 -2.38 -0.02 2.74 16 41 H 0.41 14.29 8.32 -92.70 -0.77 13.52 16 42 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 43 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 44 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -70.72 338.08 1.00 -69.72 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.30 Total: 27.40 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 4.21 Total: -0.64 kcal Atomic # 7 Polarization: -105.96 SS G_CDS: -4.89 Total: -110.84 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -0.05 Total: -30.21 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.72 1.00 -69.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094325441.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.314 kcal (2) G-P(sol) polarization free energy of solvation -70.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds