Wall clock time and date at job start Mon Mar 30 2020 01:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99601 * 2 1 4 4 C 1.50700 * 109.47139 * 270.00006 * 3 2 1 5 5 H 1.07999 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00157 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00054 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00291 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46965 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47675 * 119.99703 * 8 6 4 11 11 H 1.48502 * 109.47353 * 239.99636 * 8 6 4 12 12 C 1.34773 * 120.00438 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99993 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99876 * 0.02562 * 12 2 1 15 15 C 1.52994 * 109.47000 * 179.97438 * 14 12 2 16 16 N 1.46904 * 109.47016 * 185.08198 * 15 14 12 17 17 C 1.48540 * 110.99668 * 184.26490 * 16 15 14 18 18 C 1.54940 * 103.37413 * 159.63947 * 17 16 15 19 19 C 1.54782 * 102.83600 * 322.79948 * 18 17 16 20 20 C 1.52995 * 110.15220 * 262.84649 * 19 18 17 21 21 C 1.53001 * 110.47893 * 140.76677 * 19 18 17 22 22 C 1.47900 * 111.00185 * 301.66018 * 16 15 14 23 23 H 1.08995 * 109.47450 * 269.99972 * 1 2 3 24 24 H 1.09003 * 109.47551 * 30.00279 * 1 2 3 25 25 H 1.09005 * 109.46579 * 150.00079 * 1 2 3 26 26 H 1.09006 * 109.47241 * 29.99706 * 3 2 1 27 27 H 1.09000 * 109.47472 * 149.99757 * 3 2 1 28 28 H 0.96998 * 119.99998 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46950 * 60.00036 * 14 12 2 30 30 H 1.09000 * 109.47354 * 299.99827 * 14 12 2 31 31 H 1.09007 * 109.47284 * 65.08802 * 15 14 12 32 32 H 1.08996 * 109.47553 * 305.08074 * 15 14 12 33 33 H 1.08999 * 110.66911 * 278.15357 * 17 16 15 34 34 H 1.08996 * 110.66835 * 41.12511 * 17 16 15 35 35 H 1.09003 * 110.72388 * 81.02730 * 18 17 16 36 36 H 1.08999 * 110.72478 * 204.31300 * 18 17 16 37 37 H 1.09008 * 109.47081 * 175.71142 * 20 19 18 38 38 H 1.08994 * 109.47376 * 295.71226 * 20 19 18 39 39 H 1.09004 * 109.46882 * 55.71592 * 20 19 18 40 40 H 1.08995 * 109.47415 * 304.09661 * 21 19 18 41 41 H 1.09001 * 109.46601 * 64.09950 * 21 19 18 42 42 H 1.09004 * 109.47187 * 184.09077 * 21 19 18 43 43 H 1.09000 * 109.91466 * 333.51154 * 22 16 15 44 44 H 1.09001 * 109.91336 * 94.60700 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1267 2.8776 -1.6728 7 7 3.5540 3.6178 -0.6732 8 14 3.4386 3.4165 -3.4339 9 1 2.8616 2.4159 -4.3673 10 1 2.8015 4.7373 -3.6677 11 1 4.9013 3.5244 -3.6669 12 6 2.1390 -1.1671 0.0005 13 8 3.3517 -1.1670 0.0001 14 6 1.3855 -2.4722 0.0005 15 6 2.3798 -3.6350 0.0005 16 7 1.6495 -4.9038 -0.1222 17 6 2.5743 -6.0620 -0.0231 18 6 1.6383 -7.2364 0.3580 19 6 0.6211 -6.5688 1.3148 20 6 1.0305 -6.8077 2.7695 21 6 -0.7866 -7.1133 1.0640 22 6 0.6799 -5.0663 0.9828 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6082 2.0285 0.5138 27 1 3.1498 1.1386 0.5139 28 1 4.0314 4.4433 -0.8504 29 1 0.7592 -2.5302 -0.8897 30 1 0.7585 -2.5299 0.8903 31 1 2.9450 -3.6299 0.9326 32 1 3.0649 -3.5274 -0.8404 33 1 3.0581 -6.2511 -0.9813 34 1 3.3182 -5.8947 0.7558 35 1 1.1345 -7.6302 -0.5247 36 1 2.1941 -8.0224 0.8691 37 1 0.3512 -6.2702 3.4312 38 1 0.9841 -7.8742 2.9896 39 1 2.0481 -6.4487 2.9241 40 1 -1.0504 -6.9698 0.0163 41 1 -0.8129 -8.1764 1.3031 42 1 -1.4995 -6.5815 1.6943 43 1 1.0145 -4.5059 1.8558 44 1 -0.3026 -4.7134 0.6695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094802900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:36 Heat of formation + Delta-G solvation = -44.890591 kcal Electronic energy + Delta-G solvation = -20970.357920 eV Core-core repulsion = 17922.114822 eV Total energy + Delta-G solvation = -3048.243098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.81838 -38.77114 -35.02766 -34.56115 -32.61727 -31.29579 -29.02756 -27.65729 -27.54792 -26.17448 -25.53004 -23.44159 -22.01576 -20.85417 -19.32916 -18.14665 -16.55900 -16.44715 -16.08543 -15.29146 -15.07684 -14.94860 -14.33954 -14.09762 -13.87486 -13.77756 -13.40503 -13.03747 -12.86286 -12.45152 -12.20665 -12.15734 -11.93539 -11.78525 -11.70463 -11.55068 -11.34456 -11.07603 -10.91683 -10.83694 -10.80925 -10.72606 -10.64488 -10.54194 -10.13628 -9.58380 -8.85825 -8.42615 -8.42026 -7.60793 -6.02507 -4.07082 3.31240 3.38382 3.42051 3.49572 3.78166 4.19722 4.32966 4.45158 4.49122 4.64458 5.03701 5.12693 5.14198 5.21222 5.26493 5.31232 5.38582 5.40651 5.45948 5.48401 5.60270 5.63947 5.66815 5.72825 5.77532 5.82872 5.88620 5.95909 5.95977 6.03805 6.11538 6.13403 6.23765 6.26362 6.86222 7.03307 7.08822 7.46661 7.57586 7.94352 8.25929 8.45618 8.92988 9.13445 9.58114 11.05633 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036002 B = 0.003505 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.558247 B = 7987.187986 C = 8198.724328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.244 3.756 4 C -0.525 4.525 5 H 0.058 0.942 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.505 3.495 13 O -0.545 6.545 14 C -0.136 4.136 15 C 0.064 3.936 16 N -0.518 5.518 17 C 0.035 3.965 18 C -0.114 4.114 19 C -0.079 4.079 20 C -0.139 4.139 21 C -0.135 4.135 22 C 0.041 3.959 23 H 0.043 0.957 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.031 0.969 27 H 0.043 0.957 28 H 0.262 0.738 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.046 0.954 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.144 -20.549 4.922 23.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.125 3.875 4 C -0.564 4.564 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.424 6.424 14 C -0.176 4.176 15 C -0.064 4.064 16 N -0.242 5.242 17 C -0.093 4.093 18 C -0.152 4.152 19 C -0.079 4.079 20 C -0.197 4.197 21 C -0.192 4.192 22 C -0.087 4.087 23 H 0.061 0.939 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.671 -20.317 4.460 22.536 hybrid contribution 0.515 0.574 -0.156 0.787 sum -8.155 -19.743 4.305 21.791 Atomic orbital electron populations 1.21632 0.81468 1.02632 1.00294 1.48156 1.06176 1.07879 1.71352 1.19284 0.92541 0.78177 0.97500 1.21489 1.36310 1.06197 0.92362 0.92389 1.24951 0.95386 0.96409 0.97476 1.69948 1.38506 1.14371 1.30668 0.86434 0.78076 0.78284 0.84583 1.19769 1.20971 1.20875 1.20294 0.88067 0.85167 0.77394 1.90659 1.14006 1.87359 1.50342 1.21656 0.99267 0.92877 1.03828 1.21995 0.95125 0.87275 1.02018 1.64818 1.14553 1.02014 1.42790 1.23198 0.94671 0.90374 1.01055 1.22653 0.96521 0.96975 0.99039 1.21464 0.96042 0.95050 0.95362 1.21914 1.01279 1.01494 0.94989 1.21838 0.95006 1.00436 1.01922 1.23053 0.97810 0.94833 0.93021 0.93888 0.90825 0.92331 0.95072 0.93901 0.92800 0.88669 0.90009 0.94133 0.89547 0.90043 0.93727 0.90681 0.91174 0.92497 0.92534 0.92731 0.92134 0.92806 0.92654 0.93553 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 10.24 59.85 0.61 1.97 16 2 N -0.60 -13.13 2.86 -182.95 -0.52 -13.66 16 3 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 4 C -0.52 -15.21 9.39 -34.44 -0.32 -15.53 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 8 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 12 C 0.50 10.73 7.67 -10.99 -0.08 10.65 16 13 O -0.55 -13.99 15.50 5.56 0.09 -13.91 16 14 C -0.14 -2.09 4.01 -27.89 -0.11 -2.20 16 15 C 0.06 0.96 4.17 -3.82 -0.02 0.94 16 16 N -0.52 -6.44 5.36 -230.45 -1.23 -7.67 16 17 C 0.03 0.37 6.55 -1.89 -0.01 0.36 16 18 C -0.11 -0.99 6.18 -24.77 -0.15 -1.15 16 19 C -0.08 -0.68 0.97 -153.05 -0.15 -0.83 16 20 C -0.14 -1.10 8.20 37.16 0.30 -0.80 16 21 C -0.13 -1.01 8.24 37.16 0.31 -0.70 16 22 C 0.04 0.43 4.79 -2.75 -0.01 0.42 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 25 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 26 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 27 H 0.04 1.29 7.42 -51.93 -0.39 0.91 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.10 1.38 7.40 -51.93 -0.38 0.99 16 30 H 0.08 1.08 7.10 -51.93 -0.37 0.71 16 31 H 0.04 0.64 8.00 -51.93 -0.42 0.22 16 32 H 0.09 1.45 7.95 -51.93 -0.41 1.03 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.04 0.49 7.94 -51.93 -0.41 0.08 16 35 H 0.07 0.64 7.85 -51.93 -0.41 0.24 16 36 H 0.07 0.53 7.85 -51.93 -0.41 0.12 16 37 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.48 8.12 -51.93 -0.42 0.06 16 41 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.05 0.52 6.98 -51.93 -0.36 0.15 16 44 H 0.08 0.81 7.69 -51.93 -0.40 0.42 16 LS Contribution 348.89 15.07 5.26 5.26 Total: -1.00 -33.02 348.89 -8.51 -41.53 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -8.05 Total: -3.72 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 0.24 Total: 1.29 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -1.02 Total: -47.62 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.02 -8.51 -41.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094802900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.358 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds