Wall clock time and date at job start Mon Mar 30 2020 01:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99601 * 2 1 4 4 C 1.50700 * 109.47139 * 270.00006 * 3 2 1 5 5 H 1.07999 * 120.00161 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00157 * 180.02562 * 4 3 2 7 7 N 1.31520 * 120.00054 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 120.00291 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46965 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47675 * 119.99703 * 8 6 4 11 11 H 1.48502 * 109.47353 * 239.99636 * 8 6 4 12 12 C 1.34773 * 120.00438 * 179.97438 * 2 1 3 13 13 O 1.21274 * 119.99993 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99876 * 0.02562 * 12 2 1 15 15 C 1.52994 * 109.47000 * 179.97438 * 14 12 2 16 16 N 1.46904 * 109.47016 * 185.08198 * 15 14 12 17 17 C 1.48540 * 110.99668 * 184.26490 * 16 15 14 18 18 C 1.54940 * 103.37413 * 159.63947 * 17 16 15 19 19 C 1.54782 * 102.83600 * 322.79948 * 18 17 16 20 20 C 1.52995 * 110.15220 * 262.84649 * 19 18 17 21 21 C 1.53001 * 110.47893 * 140.76677 * 19 18 17 22 22 C 1.47900 * 111.00185 * 301.66018 * 16 15 14 23 23 H 1.08995 * 109.47450 * 269.99972 * 1 2 3 24 24 H 1.09003 * 109.47551 * 30.00279 * 1 2 3 25 25 H 1.09005 * 109.46579 * 150.00079 * 1 2 3 26 26 H 1.09006 * 109.47241 * 29.99706 * 3 2 1 27 27 H 1.09000 * 109.47472 * 149.99757 * 3 2 1 28 28 H 0.96998 * 119.99998 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46950 * 60.00036 * 14 12 2 30 30 H 1.09000 * 109.47354 * 299.99827 * 14 12 2 31 31 H 1.09007 * 109.47284 * 65.08802 * 15 14 12 32 32 H 1.08996 * 109.47553 * 305.08074 * 15 14 12 33 33 H 1.08999 * 110.66911 * 278.15357 * 17 16 15 34 34 H 1.08996 * 110.66835 * 41.12511 * 17 16 15 35 35 H 1.09003 * 110.72388 * 81.02730 * 18 17 16 36 36 H 1.08999 * 110.72478 * 204.31300 * 18 17 16 37 37 H 1.09008 * 109.47081 * 175.71142 * 20 19 18 38 38 H 1.08994 * 109.47376 * 295.71226 * 20 19 18 39 39 H 1.09004 * 109.46882 * 55.71592 * 20 19 18 40 40 H 1.08995 * 109.47415 * 304.09661 * 21 19 18 41 41 H 1.09001 * 109.46601 * 64.09950 * 21 19 18 42 42 H 1.09004 * 109.47187 * 184.09077 * 21 19 18 43 43 H 1.09000 * 109.91466 * 333.51154 * 22 16 15 44 44 H 1.09001 * 109.91336 * 94.60700 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1267 2.8776 -1.6728 7 7 3.5540 3.6178 -0.6732 8 14 3.4386 3.4165 -3.4339 9 1 2.8616 2.4159 -4.3673 10 1 2.8015 4.7373 -3.6677 11 1 4.9013 3.5244 -3.6669 12 6 2.1390 -1.1671 0.0005 13 8 3.3517 -1.1670 0.0001 14 6 1.3855 -2.4722 0.0005 15 6 2.3798 -3.6350 0.0005 16 7 1.6495 -4.9038 -0.1222 17 6 2.5743 -6.0620 -0.0231 18 6 1.6383 -7.2364 0.3580 19 6 0.6211 -6.5688 1.3148 20 6 1.0305 -6.8077 2.7695 21 6 -0.7866 -7.1133 1.0640 22 6 0.6799 -5.0663 0.9828 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8901 -0.5139 26 1 1.6082 2.0285 0.5138 27 1 3.1498 1.1386 0.5139 28 1 4.0314 4.4433 -0.8504 29 1 0.7592 -2.5302 -0.8897 30 1 0.7585 -2.5299 0.8903 31 1 2.9450 -3.6299 0.9326 32 1 3.0649 -3.5274 -0.8404 33 1 3.0581 -6.2511 -0.9813 34 1 3.3182 -5.8947 0.7558 35 1 1.1345 -7.6302 -0.5247 36 1 2.1941 -8.0224 0.8691 37 1 0.3512 -6.2702 3.4312 38 1 0.9841 -7.8742 2.9896 39 1 2.0481 -6.4487 2.9241 40 1 -1.0504 -6.9698 0.0163 41 1 -0.8129 -8.1764 1.3031 42 1 -1.4995 -6.5815 1.6943 43 1 1.0145 -4.5059 1.8558 44 1 -0.3026 -4.7134 0.6695 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094802900.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:35 Heat of formation + Delta-G solvation = -67.061382 kcal Electronic energy + Delta-G solvation = -20971.319318 eV Core-core repulsion = 17922.114822 eV Total energy + Delta-G solvation = -3049.204496 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95652 -40.17539 -36.67333 -35.71889 -34.73559 -32.41533 -30.29269 -29.25725 -28.15459 -27.39718 -26.87833 -25.10813 -23.33985 -21.90630 -20.28287 -19.57464 -18.72073 -17.93348 -17.18729 -17.04276 -16.37358 -16.18209 -16.03089 -15.11972 -14.99674 -14.52513 -14.50083 -14.20053 -14.08126 -13.77884 -13.70244 -13.46479 -13.41022 -13.16153 -12.83961 -12.67155 -12.64159 -12.51330 -12.34415 -12.22411 -12.19030 -11.94299 -11.68809 -11.55867 -11.46763 -11.34454 -10.66508 -10.62832 -9.44521 -9.40609 -8.24129 -6.39267 1.35447 1.38009 1.50132 1.81491 2.28245 2.41956 3.04455 3.06493 3.59253 3.68078 3.82192 3.93591 4.02402 4.15218 4.35207 4.39136 4.39734 4.48870 4.57834 4.66666 4.71102 4.77294 4.85517 4.86207 4.89867 4.94446 4.95273 4.97698 5.04034 5.11266 5.14485 5.19980 5.21125 5.33995 5.38200 5.52801 5.54939 5.82694 5.93995 6.01126 6.04556 6.68046 6.77344 7.26445 7.46319 8.83233 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036002 B = 0.003505 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.558247 B = 7987.187986 C = 8198.724328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.281 1.281 12 C 0.494 3.506 13 O -0.601 6.601 14 C -0.115 4.115 15 C 0.073 3.927 16 N -0.520 5.520 17 C 0.029 3.971 18 C -0.107 4.107 19 C -0.077 4.077 20 C -0.138 4.138 21 C -0.131 4.131 22 C 0.036 3.964 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.024 0.976 27 H -0.004 1.004 28 H 0.268 0.732 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.025 0.975 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.281 -22.132 4.274 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.342 5.342 3 C 0.136 3.864 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.207 1.207 12 C 0.283 3.717 13 O -0.483 6.483 14 C -0.155 4.155 15 C -0.056 4.056 16 N -0.244 5.244 17 C -0.099 4.099 18 C -0.145 4.145 19 C -0.077 4.077 20 C -0.195 4.195 21 C -0.188 4.188 22 C -0.092 4.092 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.112 0.888 26 H 0.042 0.958 27 H 0.014 0.986 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.866 -21.922 3.822 24.764 hybrid contribution 1.182 1.045 0.103 1.581 sum -9.684 -20.877 3.925 23.346 Atomic orbital electron populations 1.21945 0.77743 1.04076 1.02617 1.48203 1.08515 1.06375 1.71118 1.18760 0.91066 0.80474 0.96062 1.21747 1.36850 1.06570 0.93042 0.92878 1.25896 0.94851 0.96397 1.02159 1.70062 1.38936 1.14859 1.33045 0.85333 0.77897 0.78438 0.78925 1.19109 1.19233 1.20723 1.21348 0.87790 0.86728 0.75833 1.90627 1.16755 1.88267 1.52692 1.21556 0.98821 0.89052 1.06041 1.21783 0.94840 0.88775 1.00211 1.64826 1.14730 1.01094 1.43759 1.23292 0.94944 0.90735 1.00934 1.22647 0.96129 0.96333 0.99405 1.21478 0.96921 0.93628 0.95712 1.21900 1.00652 1.02394 0.94548 1.21804 0.94027 1.01147 1.01836 1.23180 0.97436 0.96429 0.92137 0.91050 0.91539 0.88751 0.95793 0.98572 0.92359 0.86716 0.86944 0.95630 0.92075 0.90137 0.94393 0.90223 0.89777 0.92145 0.91212 0.93854 0.92470 0.91712 0.92087 0.94169 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.36 10.24 127.77 1.31 3.67 16 2 N -0.61 -26.69 2.86 -851.13 -2.43 -29.12 16 3 C 0.26 14.34 5.16 85.63 0.44 14.78 16 4 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.34 5.46 84.65 0.46 0.80 16 7 N -0.93 -57.22 13.29 21.45 0.28 -56.93 16 8 Si 0.97 45.73 29.54 68.60 2.03 47.76 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 C 0.49 21.24 7.67 87.66 0.67 21.91 16 13 O -0.60 -32.32 15.50 -3.01 -0.05 -32.36 16 14 C -0.11 -3.36 4.01 29.85 0.12 -3.24 16 15 C 0.07 2.17 4.17 86.30 0.36 2.53 16 16 N -0.52 -12.25 5.36 -883.00 -4.73 -16.98 16 17 C 0.03 0.59 6.55 86.65 0.57 1.16 16 18 C -0.11 -1.64 6.18 31.87 0.20 -1.44 16 19 C -0.08 -1.14 0.97 -51.24 -0.05 -1.19 16 20 C -0.14 -1.87 8.20 71.98 0.59 -1.28 16 21 C -0.13 -1.56 8.24 71.98 0.59 -0.96 16 22 C 0.04 0.68 4.79 86.45 0.41 1.09 16 23 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 25 H 0.09 2.17 6.44 -2.38 -0.02 2.16 16 26 H 0.02 1.34 8.07 -2.38 -0.02 1.32 16 27 H 0.00 -0.25 7.42 -2.39 -0.02 -0.26 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.11 2.97 7.40 -2.38 -0.02 2.96 16 30 H 0.11 2.64 7.10 -2.39 -0.02 2.62 16 31 H 0.03 0.83 8.00 -2.38 -0.02 0.81 16 32 H 0.06 2.12 7.95 -2.39 -0.02 2.10 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 0.83 7.94 -2.39 -0.02 0.81 16 35 H 0.08 1.16 7.85 -2.39 -0.02 1.14 16 36 H 0.08 1.06 7.85 -2.39 -0.02 1.05 16 37 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 43 H 0.04 0.82 6.98 -2.39 -0.02 0.80 16 44 H 0.09 1.53 7.69 -2.39 -0.02 1.51 16 Total: -1.00 -74.45 348.89 1.96 -72.49 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.94 Total: 9.24 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: 5.92 Total: 5.91 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -6.88 Total: -103.03 kcal Atomic # 8 Polarization: -32.32 SS G_CDS: -0.05 Total: -32.36 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -74.45 1.96 -72.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094802900.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.428 kcal (2) G-P(sol) polarization free energy of solvation -74.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds