Wall clock time and date at job start Mon Mar 30 2020 01:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00283 * 2 1 4 4 C 1.50702 * 109.46796 * 66.04964 * 3 2 1 5 5 O 1.21293 * 120.00190 * 359.97438 * 4 3 2 6 6 N 1.34781 * 120.00026 * 180.02562 * 4 3 2 7 7 C 1.37098 * 119.99846 * 180.02562 * 6 4 3 8 8 H 1.07994 * 120.00251 * 359.97438 * 7 6 4 9 9 C 1.38955 * 119.99368 * 179.97438 * 7 6 4 10 10 N 1.31407 * 120.00429 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99708 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46859 * 59.99831 * 11 9 7 13 13 H 1.48495 * 109.47269 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47133 * 300.00068 * 11 9 7 15 15 C 1.46906 * 110.99573 * 236.04859 * 2 1 3 16 16 C 1.52996 * 109.47112 * 58.95614 * 15 2 1 17 17 C 1.52996 * 109.46951 * 180.02562 * 16 15 2 18 18 C 1.53001 * 109.47365 * 59.99890 * 17 16 15 19 19 C 1.52996 * 109.46992 * 180.02562 * 18 17 16 20 20 C 1.53000 * 109.47335 * 59.99932 * 18 17 16 21 21 C 1.52996 * 109.47176 * 299.99973 * 18 17 16 22 22 C 1.52997 * 109.46907 * 298.95472 * 15 2 1 23 23 H 1.09004 * 109.47457 * 183.95363 * 1 2 3 24 24 H 1.09001 * 109.46615 * 303.95014 * 1 2 3 25 25 H 1.08990 * 109.47358 * 63.94680 * 1 2 3 26 26 H 1.08999 * 109.46988 * 186.04548 * 3 2 1 27 27 H 1.08996 * 109.46945 * 306.05035 * 3 2 1 28 28 H 0.96995 * 119.99550 * 359.97438 * 6 4 3 29 29 H 0.96996 * 120.00461 * 180.02562 * 10 9 7 30 30 H 1.09000 * 109.47043 * 178.95588 * 15 2 1 31 31 H 1.09006 * 109.46822 * 299.99597 * 16 15 2 32 32 H 1.08997 * 109.47474 * 59.99711 * 16 15 2 33 33 H 1.08993 * 109.47243 * 299.99585 * 17 16 15 34 34 H 1.09007 * 109.46984 * 179.97438 * 17 16 15 35 35 H 1.09009 * 109.47251 * 180.02562 * 19 18 17 36 36 H 1.09003 * 109.47204 * 299.99233 * 19 18 17 37 37 H 1.08993 * 109.47460 * 59.99790 * 19 18 17 38 38 H 1.09002 * 109.46738 * 300.00488 * 20 18 17 39 39 H 1.09007 * 109.47132 * 60.00053 * 20 18 17 40 40 H 1.08996 * 109.47552 * 179.97438 * 20 18 17 41 41 H 1.09006 * 109.46822 * 300.00209 * 21 18 17 42 42 H 1.08997 * 109.47474 * 180.02562 * 21 18 17 43 43 H 1.09004 * 109.47394 * 299.99454 * 22 15 2 44 44 H 1.08990 * 109.47621 * 60.00353 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0470 1.2985 5 8 1.0048 1.4454 2.1409 6 7 2.0182 3.3201 1.5235 7 6 1.6925 3.9345 2.7050 8 1 1.1303 3.3986 3.4553 9 6 2.0860 5.2468 2.9370 10 7 2.7705 5.8988 2.0243 11 14 1.6417 6.0844 4.5466 12 1 2.2335 5.3268 5.6785 13 1 2.1744 7.4705 4.5469 14 1 0.1644 6.1212 4.6941 15 6 1.9954 -0.7660 -1.1377 16 6 1.4836 -0.1556 -2.4439 17 6 2.0313 -0.9537 -3.6288 18 6 1.5616 -2.4062 -3.5261 19 6 2.1098 -3.2044 -4.7106 20 6 0.0323 -2.4502 -3.5448 21 6 2.0733 -3.0166 -2.2198 22 6 1.5261 -2.2186 -1.0352 23 1 -0.3634 -1.0252 0.0709 24 1 -0.3632 0.5739 0.8525 25 1 -0.3633 0.4513 -0.9231 26 1 3.0798 1.3443 -0.1082 27 1 1.5611 1.9273 -0.8308 28 1 2.5235 3.8012 0.8497 29 1 3.0455 6.8147 2.1864 30 1 3.0848 -0.7343 -1.1241 31 1 0.3941 -0.1874 -2.4575 32 1 1.8179 0.8793 -2.5169 33 1 3.1207 -0.9224 -3.6155 34 1 1.6663 -0.5191 -4.5594 35 1 1.7748 -4.2392 -4.6377 36 1 1.7455 -2.7698 -5.6415 37 1 3.1992 -3.1731 -4.6968 38 1 -0.3579 -1.8816 -2.7007 39 1 -0.3323 -2.0154 -4.4755 40 1 -0.3024 -3.4850 -3.4722 41 1 3.1628 -2.9852 -2.2065 42 1 1.7391 -4.0515 -2.1469 43 1 1.8908 -2.6535 -0.1046 44 1 0.4368 -2.2504 -1.0488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127630297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:59 Heat of formation + Delta-G solvation = -71.426594 kcal Electronic energy + Delta-G solvation = -21445.655527 eV Core-core repulsion = 18396.261741 eV Total energy + Delta-G solvation = -3049.393786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17637 -39.95031 -37.45072 -35.86964 -33.28872 -32.60597 -31.72397 -29.41859 -28.17063 -27.42006 -26.58034 -24.47900 -23.64221 -21.29414 -20.72275 -19.80716 -19.17258 -17.93782 -16.69352 -16.50200 -16.28100 -16.07337 -15.77462 -15.68013 -15.11891 -14.93268 -14.72060 -14.08791 -14.05782 -13.62255 -13.48287 -13.16112 -13.12473 -12.95772 -12.78777 -12.62519 -12.50202 -12.44477 -12.41635 -12.16886 -12.12200 -11.86797 -11.65161 -11.45424 -11.13378 -10.99265 -10.85442 -10.25570 -9.99433 -9.05509 -8.45698 -5.94498 1.39832 1.41243 1.52392 2.06456 2.28956 2.80991 3.20883 3.44451 3.75023 3.77227 3.95994 4.11166 4.20149 4.30009 4.34399 4.45469 4.49288 4.51758 4.56706 4.60813 4.66088 4.71122 4.77023 4.88655 4.92342 4.99040 5.08543 5.12636 5.14946 5.18925 5.24246 5.27731 5.29403 5.38901 5.41623 5.52277 5.58045 5.67668 5.93251 6.12667 6.31058 6.61997 7.13781 7.57420 8.13752 8.71637 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047430 B = 0.003571 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.196036 B = 7838.872565 C = 8089.916119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.059 3.941 4 C 0.441 3.559 5 O -0.614 6.614 6 N -0.575 5.575 7 C -0.334 4.334 8 H 0.079 0.921 9 C -0.013 4.013 10 N -0.922 5.922 11 Si 0.993 3.007 12 H -0.272 1.272 13 H -0.270 1.270 14 H -0.272 1.272 15 C 0.087 3.913 16 C -0.153 4.153 17 C -0.098 4.098 18 C -0.064 4.064 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.100 4.100 22 C -0.108 4.108 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.031 0.969 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.395 0.605 29 H 0.278 0.722 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.571 -14.749 -15.176 21.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.254 5.254 3 C -0.072 4.072 4 C 0.229 3.771 5 O -0.500 6.500 6 N -0.212 5.212 7 C -0.463 4.463 8 H 0.097 0.903 9 C -0.213 4.213 10 N -0.563 5.563 11 Si 0.816 3.184 12 H -0.197 1.197 13 H -0.194 1.194 14 H -0.197 1.197 15 C -0.020 4.020 16 C -0.192 4.192 17 C -0.136 4.136 18 C -0.064 4.064 19 C -0.195 4.195 20 C -0.201 4.201 21 C -0.138 4.138 22 C -0.146 4.146 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.121 0.879 27 H 0.082 0.918 28 H 0.229 0.771 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.754 -15.180 -14.173 20.782 hybrid contribution -0.190 1.420 -0.065 1.434 sum -0.944 -13.760 -14.239 19.823 Atomic orbital electron populations 1.22419 0.87417 1.02253 1.00049 1.61802 1.08645 1.11832 1.43118 1.21696 1.01691 0.90083 0.93731 1.20806 0.83686 0.82214 0.90438 1.90455 1.45109 1.65387 1.49064 1.41933 1.50130 1.11568 1.17614 1.19633 1.34521 0.96469 0.95716 0.90338 1.26034 0.96242 0.96576 1.02399 1.69665 1.38109 1.12693 1.35790 0.84997 0.78634 0.77297 0.77452 1.19735 1.19433 1.19683 1.21848 0.99381 0.93821 0.86993 1.22246 1.01514 0.99445 0.95963 1.21499 1.00615 0.94430 0.97102 1.20543 0.95672 0.94856 0.95377 1.21824 1.00932 0.99784 0.96931 1.21959 0.94817 1.01795 1.01538 1.21541 1.00585 0.98870 0.92828 1.21574 1.01110 0.93255 0.98666 0.90480 0.93014 0.95095 0.87867 0.91761 0.77118 0.91306 0.90311 0.91568 0.92635 0.91648 0.91583 0.92198 0.92455 0.92435 0.93093 0.92633 0.92273 0.91656 0.90964 0.92413 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 8.46 127.69 1.08 1.97 16 2 N -0.53 -17.93 4.49 -901.62 -4.05 -21.98 16 3 C 0.06 2.17 4.89 85.56 0.42 2.58 16 4 C 0.44 21.73 7.48 87.66 0.66 22.39 16 5 O -0.61 -34.80 13.91 -3.07 -0.04 -34.84 16 6 N -0.57 -30.33 5.29 -306.98 -1.62 -31.96 16 7 C -0.33 -19.35 9.68 84.04 0.81 -18.53 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 10 N -0.92 -50.50 13.05 21.66 0.28 -50.22 16 11 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 13 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 14 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 15 C 0.09 2.20 2.23 44.91 0.10 2.30 16 16 C -0.15 -3.33 4.24 30.59 0.13 -3.20 16 17 C -0.10 -1.69 4.73 30.59 0.14 -1.55 16 18 C -0.06 -0.99 0.77 -52.18 -0.04 -1.03 16 19 C -0.14 -1.73 8.47 71.98 0.61 -1.12 16 20 C -0.14 -2.26 7.78 71.98 0.56 -1.70 16 21 C -0.10 -1.68 4.73 30.58 0.14 -1.53 16 22 C -0.11 -2.37 4.72 30.58 0.14 -2.23 16 23 H 0.08 2.27 6.33 -2.38 -0.02 2.25 16 24 H 0.05 2.17 5.82 -2.39 -0.01 2.16 16 25 H 0.03 0.92 6.28 -2.39 -0.02 0.91 16 26 H 0.10 3.41 8.00 -2.39 -0.02 3.39 16 27 H 0.06 2.15 6.94 -2.39 -0.02 2.13 16 28 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 29 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 30 H 0.08 1.97 8.03 -2.39 -0.02 1.95 16 31 H 0.07 1.50 4.67 -2.38 -0.01 1.49 16 32 H 0.05 1.29 6.75 -2.39 -0.02 1.27 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.93 4.81 -2.39 -0.01 0.91 16 39 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.07 1.45 4.71 -2.39 -0.01 1.44 16 Total: -1.00 -65.41 328.40 2.08 -63.33 By element: Atomic # 1 Polarization: 31.71 SS G_CDS: 0.25 Total: 31.97 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 5.23 Total: -1.90 kcal Atomic # 7 Polarization: -98.76 SS G_CDS: -5.39 Total: -104.15 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.04 Total: -34.84 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -65.41 2.08 -63.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127630297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.094 kcal (2) G-P(sol) polarization free energy of solvation -65.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds