Wall clock time and date at job start Mon Mar 30 2020 01:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00158 * 2 1 4 4 H 1.48503 * 109.47064 * 269.99723 * 3 2 1 5 5 H 1.48506 * 109.47308 * 29.99608 * 3 2 1 6 6 H 1.48497 * 109.47213 * 149.99809 * 3 2 1 7 7 C 1.37873 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00432 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99970 * 179.97438 * 7 2 1 10 10 C 1.53005 * 109.46998 * 180.02562 * 9 7 2 11 11 N 1.46906 * 109.46613 * 180.02562 * 10 9 7 12 12 C 1.48561 * 111.00005 * 290.12401 * 11 10 9 13 13 C 1.54385 * 104.59469 * 200.96422 * 12 11 10 14 14 C 1.54259 * 105.05743 * 23.85227 * 13 12 11 15 15 H 1.08997 * 110.32446 * 241.00057 * 14 13 12 16 16 C 1.53006 * 110.32167 * 118.89739 * 14 13 12 17 17 N 1.46894 * 109.47059 * 65.20803 * 16 14 13 18 18 C 1.47019 * 111.00206 * 75.93574 * 17 16 14 19 19 C 1.53093 * 109.25907 * 182.39012 * 18 17 16 20 20 O 1.43018 * 109.26310 * 303.15502 * 19 18 17 21 21 C 1.43018 * 113.73638 * 58.66491 * 20 19 18 22 22 C 1.47019 * 111.00049 * 199.57417 * 17 16 14 23 23 C 1.48565 * 110.99362 * 174.70898 * 11 10 9 24 24 H 0.97007 * 119.99415 * 0.02562 * 1 2 3 25 25 H 1.09007 * 109.46933 * 60.00458 * 9 7 2 26 26 H 1.08996 * 109.47708 * 300.00352 * 9 7 2 27 27 H 1.08993 * 109.47029 * 60.00374 * 10 9 7 28 28 H 1.08995 * 109.47024 * 299.99983 * 10 9 7 29 29 H 1.09000 * 110.40645 * 82.18834 * 12 11 10 30 30 H 1.08997 * 110.51206 * 319.79219 * 12 11 10 31 31 H 1.08999 * 110.32351 * 264.96343 * 13 12 11 32 32 H 1.08992 * 110.32444 * 142.74905 * 13 12 11 33 33 H 1.09006 * 109.47049 * 305.20897 * 16 14 13 34 34 H 1.09001 * 109.46997 * 185.21095 * 16 14 13 35 35 H 1.08998 * 109.49967 * 62.45809 * 18 17 16 36 36 H 1.09000 * 109.54376 * 302.35139 * 18 17 16 37 37 H 1.08999 * 109.50542 * 183.21636 * 19 18 17 38 38 H 1.09005 * 109.50657 * 63.08926 * 19 18 17 39 39 H 1.09003 * 109.50211 * 61.27352 * 21 20 19 40 40 H 1.08999 * 109.50584 * 181.39482 * 21 20 19 41 41 H 1.09000 * 109.50113 * 297.53906 * 22 17 16 42 42 H 1.08996 * 109.50762 * 57.67511 * 22 17 16 43 43 H 1.08997 * 110.41200 * 40.26079 * 23 11 10 44 44 H 1.08997 * 110.40811 * 277.81526 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6528 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 7 5.4905 -2.6366 0.0001 12 6 6.0230 -2.1594 -1.3022 13 6 7.4649 -2.7083 -1.3575 14 6 7.4648 -3.9307 -0.4166 15 1 8.1711 -3.7801 0.3998 16 6 7.8163 -5.2003 -1.1947 17 7 9.1972 -5.1066 -1.6867 18 6 10.1604 -5.3383 -0.6005 19 6 11.5825 -5.1728 -1.1428 20 8 11.7767 -6.0701 -2.2394 21 6 10.8558 -5.8720 -3.3155 22 6 9.4264 -6.0447 -2.7953 23 6 6.0229 -4.0176 0.1282 24 1 -0.4849 0.8402 -0.0004 25 1 3.8752 -0.6797 0.8896 26 1 3.8746 -0.6808 -0.8904 27 1 3.6579 -3.1506 -0.8896 28 1 3.6585 -3.1502 0.8903 29 1 6.0295 -1.0699 -1.3339 30 1 5.4320 -2.5595 -2.1260 31 1 8.1699 -1.9570 -1.0019 32 1 7.7153 -3.0128 -2.3737 33 1 7.1361 -5.3087 -2.0396 34 1 7.7221 -6.0661 -0.5391 35 1 10.0344 -6.3489 -0.2119 36 1 9.9893 -4.6171 0.1986 37 1 12.3011 -5.3995 -0.3552 38 1 11.7254 -4.1469 -1.4824 39 1 10.9776 -4.8664 -3.7183 40 1 11.0489 -6.6044 -4.0993 41 1 9.2887 -7.0665 -2.4416 42 1 8.7193 -5.8384 -3.5987 43 1 5.4313 -4.7101 -0.4707 44 1 6.0293 -4.3271 1.1732 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129511415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:58 Heat of formation + Delta-G solvation = -40.987356 kcal Electronic energy + Delta-G solvation = -20879.507006 eV Core-core repulsion = 17831.433165 eV Total energy + Delta-G solvation = -3048.073841 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00789 -38.70775 -36.11130 -33.69351 -32.13088 -31.50457 -29.83426 -29.01269 -27.38775 -24.66343 -24.35403 -23.36675 -21.47733 -20.71640 -20.24328 -19.25295 -16.87683 -16.82550 -16.44876 -16.00147 -15.38448 -15.37032 -15.07607 -14.44811 -14.29950 -14.08181 -13.91391 -13.35162 -12.90778 -12.73254 -12.41511 -12.28460 -12.12366 -11.76324 -11.65310 -11.53960 -11.27379 -11.11706 -10.88035 -10.76071 -10.64768 -10.36927 -9.96357 -9.88880 -9.83041 -9.67541 -9.19516 -8.67294 -8.51410 -7.98178 -6.02950 -4.00993 3.33555 3.38959 3.40914 3.47748 3.57065 4.39084 4.48180 4.56108 4.64165 4.68056 4.80157 4.82769 4.91708 4.97318 5.09096 5.19581 5.29671 5.31859 5.32723 5.42648 5.46000 5.47511 5.55866 5.58569 5.67514 5.81715 5.95690 6.03462 6.09796 6.19253 6.31510 6.38945 6.44925 6.65506 6.68328 6.78315 6.80626 7.17214 7.24306 7.49746 7.64535 7.86663 8.54683 9.01012 9.59836 11.10453 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046281 B = 0.003138 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.853428 B = 8920.161763 C = 9067.192247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.005 4.005 10 C 0.060 3.940 11 N -0.513 5.513 12 C 0.031 3.969 13 C -0.105 4.105 14 C -0.084 4.084 15 H 0.075 0.925 16 C 0.063 3.937 17 N -0.534 5.534 18 C 0.017 3.983 19 C 0.064 3.936 20 O -0.388 6.388 21 C 0.064 3.936 22 C 0.017 3.983 23 C 0.036 3.964 24 H 0.263 0.737 25 H 0.024 0.976 26 H 0.010 0.990 27 H 0.027 0.973 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.941 -11.961 -4.518 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.088 0.912 9 C -0.043 4.043 10 C -0.067 4.067 11 N -0.237 5.237 12 C -0.097 4.097 13 C -0.143 4.143 14 C -0.104 4.104 15 H 0.094 0.906 16 C -0.065 4.065 17 N -0.259 5.259 18 C -0.112 4.112 19 C -0.013 4.013 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.111 4.111 23 C -0.093 4.093 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.028 0.972 27 H 0.046 0.954 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.149 -11.169 -4.247 26.051 hybrid contribution -0.515 -0.255 -0.342 0.669 sum 22.634 -11.425 -4.589 25.766 Atomic orbital electron populations 1.69922 1.06325 1.26893 1.51255 1.24999 0.94718 0.99203 0.94487 0.86760 0.80551 0.83440 0.78499 1.20367 1.21425 1.18706 1.21100 0.89494 0.94474 1.50916 0.91191 1.19514 0.96363 0.91659 0.96757 1.22279 0.84169 1.00462 0.99784 1.65469 1.10397 1.17254 1.30572 1.23129 0.94501 1.01049 0.91032 1.22216 0.96353 0.96393 0.99359 1.21849 0.96581 0.94294 0.97654 0.90636 1.22242 0.88495 0.97006 0.98729 1.62157 1.03654 1.51139 1.08911 1.22827 0.92995 1.00792 0.94540 1.22673 0.95383 0.94042 0.89249 1.87977 1.55735 1.58497 1.28471 1.22662 0.87370 1.01967 0.89307 1.22800 0.98441 0.94738 0.95135 1.23083 0.93868 0.91668 1.00651 0.92753 0.95759 0.97175 0.95432 0.91555 0.90362 0.94149 0.91652 0.91152 0.90689 0.94430 0.94061 0.89272 0.88540 0.92139 0.92159 0.88566 0.94078 0.89554 0.94235 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.28 13.96 55.43 0.77 -27.51 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.18 27.47 -169.99 -4.67 17.52 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.13 4.10 -27.88 -0.11 -0.24 16 10 C 0.06 1.25 4.75 -3.82 -0.02 1.24 16 11 N -0.51 -9.04 5.37 -229.96 -1.24 -10.27 16 12 C 0.03 0.49 5.73 -2.18 -0.01 0.48 16 13 C -0.11 -1.33 6.45 -25.35 -0.16 -1.49 16 14 C -0.08 -0.98 3.12 -89.23 -0.28 -1.26 16 15 H 0.08 0.86 6.87 -51.93 -0.36 0.50 16 16 C 0.06 0.63 4.10 -3.82 -0.02 0.61 16 17 N -0.53 -5.00 4.32 -234.31 -1.01 -6.01 16 18 C 0.02 0.14 5.47 -3.71 -0.02 0.12 16 19 C 0.06 0.51 7.01 37.21 0.26 0.77 16 20 O -0.39 -3.79 10.83 -35.23 -0.38 -4.17 16 21 C 0.06 0.50 7.01 37.21 0.26 0.77 16 22 C 0.02 0.14 5.60 -3.71 -0.02 0.12 16 23 C 0.04 0.51 6.03 -2.18 -0.01 0.49 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.02 0.62 7.20 -51.92 -0.37 0.24 16 26 H 0.01 0.25 6.68 -51.93 -0.35 -0.10 16 27 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 28 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 29 H 0.08 1.32 7.76 -51.93 -0.40 0.91 16 30 H 0.04 0.65 7.83 -51.93 -0.41 0.25 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.84 7.60 -51.93 -0.39 0.44 16 33 H 0.07 0.76 7.86 -51.93 -0.41 0.36 16 34 H 0.04 0.37 7.99 -51.93 -0.41 -0.05 16 35 H 0.04 0.37 8.13 -51.93 -0.42 -0.06 16 36 H 0.09 0.73 6.81 -51.93 -0.35 0.38 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.09 0.65 8.02 -51.93 -0.42 0.23 16 43 H 0.04 0.55 7.72 -51.93 -0.40 0.15 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 336.96 15.07 5.08 5.08 Total: -1.00 -31.69 336.96 -10.09 -41.78 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -8.07 Total: -4.43 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.57 Total: -11.98 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -1.47 Total: -43.79 kcal Atomic # 8 Polarization: -3.79 SS G_CDS: -0.38 Total: -4.17 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.69 -10.09 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129511415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.791 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds